RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 NISCHQ9Y2I1 1504 aa34.25■■■■□ 3.07
LIG1-218ENST00000599322 CCDC180Q9P1Z9 1646 aa30.83■■■□□ 2.53
LIG1-218ENST00000599322 ABCC9O60706 1549 aa30.79■■■□□ 2.52
LIG1-218ENST00000599322 RB1CC1Q8TDY2 1594 aa29.3■■■□□ 2.28
LIG1-218ENST00000599322 NACADO15069 1562 aa29.09■■■□□ 2.25
LIG1-218ENST00000599322 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
LIG1-218ENST00000599322 DNAJC5BQ9UF47 199 aa28.93■■■□□ 2.22
LIG1-218ENST00000599322 UNC13AQ9UPW8 1703 aa28.83■■■□□ 2.21
LIG1-218ENST00000599322 MYO15BQ96JP2 1530 aa28.66■■■□□ 2.18
LIG1-218ENST00000599322 PABPN1Q86U42 306 aaKnown RBP eCLIP28.61■■■□□ 2.175e-6■■■■□ 22.2
LIG1-218ENST00000599322 BICRAQ9NZM4 1560 aa28.52■■■□□ 2.16
LIG1-218ENST00000599322 ZCCHC6Q5VYS8 1495 aaKnown RBP28.44■■■□□ 2.14
LIG1-218ENST00000599322 DCAF1Q9Y4B6 1507 aa28.32■■■□□ 2.12
LIG1-218ENST00000599322 SCRIBQ14160 1630 aa28.06■■■□□ 2.08
LIG1-218ENST00000599322 SHROOM4Q9ULL8 1493 aa28.03■■■□□ 2.08
LIG1-218ENST00000599322 CC2D2AQ9P2K1 1620 aa27.87■■■□□ 2.05
LIG1-218ENST00000599322 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
LIG1-218ENST00000599322 CECR2Q9BXF3 1484 aa27.72■■■□□ 2.03
LIG1-218ENST00000599322 NCAPD3P42695 1498 aa26.82■■□□□ 1.88
LIG1-218ENST00000599322 SMARCA4P51532 1647 aa26.77■■□□□ 1.88
LIG1-218ENST00000599322 ATAD2BQ9ULI0 1458 aa26.75■■□□□ 1.87
LIG1-218ENST00000599322 SMARCA2P51531 1590 aa26.67■■□□□ 1.86
LIG1-218ENST00000599322 HMGXB3Q12766 1538 aa26.66■■□□□ 1.86
LIG1-218ENST00000599322 BAZ1AQ9NRL2 1556 aaPredicted RBP26.6■■□□□ 1.85
LIG1-218ENST00000599322 DNAJC5Q9H3Z4 198 aa26.55■■□□□ 1.84
LIG1-218ENST00000599322 CUX2O14529 1486 aa26.54■■□□□ 1.84
LIG1-218ENST00000599322 ERCC6Q03468 1493 aa26.54■■□□□ 1.84
LIG1-218ENST00000599322 PEG3Q9GZU2 1588 aa26.5■■□□□ 1.83
LIG1-218ENST00000599322 BAZ1BQ9UIG0 1483 aaKnown RBP26.48■■□□□ 1.83
LIG1-218ENST00000599322 NESP48681 1621 aa26.47■■□□□ 1.83
LIG1-218ENST00000599322 MROH2BQ7Z745 1585 aa26.41■■□□□ 1.82
LIG1-218ENST00000599322 LAMC3Q9Y6N6 1575 aa26.27■■□□□ 1.8
LIG1-218ENST00000599322 THOC2Q8NI27 1593 aaKnown RBP26.26■■□□□ 1.79
LIG1-218ENST00000599322 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
LIG1-218ENST00000599322 WIZO95785 1651 aa26.14■■□□□ 1.78
LIG1-218ENST00000599322 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
LIG1-218ENST00000599322 RSF1Q96T23 1441 aaPredicted RBP26.01■■□□□ 1.75
LIG1-218ENST00000599322 CADPSQ9ULU8 1353 aa25.98■■□□□ 1.75
LIG1-218ENST00000599322 MRC2Q9UBG0 1479 aa25.86■■□□□ 1.73
LIG1-218ENST00000599322 WDR62O43379 1518 aa25.84■■□□□ 1.73
LIG1-218ENST00000599322 TOP2AP11388 1531 aaKnown RBP25.8■■□□□ 1.72
LIG1-218ENST00000599322 CEP164Q9UPV0 1460 aa25.75■■□□□ 1.71
LIG1-218ENST00000599322 FANCD2Q9BXW9 1451 aa25.72■■□□□ 1.71
LIG1-218ENST00000599322 CFTRP13569 1480 aa25.71■■□□□ 1.71
LIG1-218ENST00000599322 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
LIG1-218ENST00000599322 URB2Q14146 1524 aaKnown RBP25.55■■□□□ 1.68
LIG1-218ENST00000599322 CCDC88BA6NC98 1476 aa25.51■■□□□ 1.67
LIG1-218ENST00000599322 SUPT5HO00267 1087 aaKnown RBP25.38■■□□□ 1.65
LIG1-218ENST00000599322 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
LIG1-218ENST00000599322 OSCARQ8IYS5 282 aa25.26■■□□□ 1.63
LIG1-218ENST00000599322 TOPBP1Q92547 1522 aa25.25■■□□□ 1.63
LIG1-218ENST00000599322 ZNF608Q9ULD9 1512 aaPredicted RBP25.23■■□□□ 1.63
LIG1-218ENST00000599322 IFT140Q96RY7 1462 aa25.22■■□□□ 1.63
LIG1-218ENST00000599322 DNMBPQ6XZF7 1577 aa25.17■■□□□ 1.62
LIG1-218ENST00000599322 ABCC8Q09428 1581 aa25.14■■□□□ 1.62
LIG1-218ENST00000599322 EIF4G3O43432 1585 aaKnown RBP25.14■■□□□ 1.61
LIG1-218ENST00000599322 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.61
LIG1-218ENST00000599322 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.61
LIG1-218ENST00000599322 TARBP1Q13395 1621 aaKnown RBP25.08■■□□□ 1.61
LIG1-218ENST00000599322 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.61
LIG1-218ENST00000599322 CHD1O14646 1710 aa25.02■■□□□ 1.6
LIG1-218ENST00000599322 POLA1P09884 1462 aaPredicted RBP24.98■■□□□ 1.59
LIG1-218ENST00000599322 AQRO60306 1485 aaKnown RBP eCLIP24.96■■□□□ 1.592e-8■■■■■ 41
LIG1-218ENST00000599322 ARHGEF11O15085 1522 aa24.94■■□□□ 1.58
LIG1-218ENST00000599322 RAD54L2Q9Y4B4 1467 aa24.89■■□□□ 1.58
LIG1-218ENST00000599322 FGD5Q6ZNL6 1462 aa24.83■■□□□ 1.56
LIG1-218ENST00000599322 SOGA1O94964 1423 aa24.82■■□□□ 1.56
LIG1-218ENST00000599322 CUX1P39880 1505 aa24.81■■□□□ 1.56
LIG1-218ENST00000599322 WDR97A6NE52 1622 aa24.79■■□□□ 1.56
LIG1-218ENST00000599322 TDRD9Q8NDG6 1382 aaKnown RBP24.78■■□□□ 1.56
LIG1-218ENST00000599322 FBLN2P98095 1184 aa24.74■■□□□ 1.55
LIG1-218ENST00000599322 SNAPC4Q5SXM2 1469 aa24.72■■□□□ 1.55
LIG1-218ENST00000599322 ARAP1Q96P48 1450 aa24.7■■□□□ 1.54
LIG1-218ENST00000599322 CYB5RLQ6IPT4 315 aa24.68■■□□□ 1.54
LIG1-218ENST00000599322 PBRM1Q86U86 1689 aa24.67■■□□□ 1.54
LIG1-218ENST00000599322 CLASP1Q7Z460 1538 aa24.66■■□□□ 1.54
LIG1-218ENST00000599322 MAGI1Q96QZ7 1491 aaPredicted RBP24.64■■□□□ 1.54
LIG1-218ENST00000599322 GRIN2BQ13224 1484 aa24.63■■□□□ 1.53
LIG1-218ENST00000599322 WRNQ14191 1432 aaPredicted RBP eCLIP24.61■■□□□ 1.53
LIG1-218ENST00000599322 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
LIG1-218ENST00000599322 ABCA5Q8WWZ7 1642 aa24.57■■□□□ 1.52
LIG1-218ENST00000599322 SYNJ2O15056 1496 aa24.56■■□□□ 1.52
LIG1-218ENST00000599322 CHMP7Q8WUX9 453 aaPredicted RBP24.55■■□□□ 1.52
LIG1-218ENST00000599322 GAPVD1Q14C86 1478 aa24.54■■□□□ 1.52
LIG1-218ENST00000599322 ABCA10Q8WWZ4 1543 aa24.53■■□□□ 1.52
LIG1-218ENST00000599322 TOP2BQ02880 1626 aa24.49■■□□□ 1.51
LIG1-218ENST00000599322 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
LIG1-218ENST00000599322 TRHP20396 242 aaPredicted RBP24.4■■□□□ 1.5
LIG1-218ENST00000599322 ADAMTS12P58397 1594 aa24.37■■□□□ 1.49
LIG1-218ENST00000599322 GRIN2AQ12879 1464 aa24.33■■□□□ 1.49
LIG1-218ENST00000599322 CEP170Q5SW79 1584 aa24.3■■□□□ 1.48
LIG1-218ENST00000599322 ERCC6L2Q5T890 1561 aa24.29■■□□□ 1.48
LIG1-218ENST00000599322 NUP160Q12769 1436 aa24.25■■□□□ 1.47
LIG1-218ENST00000599322 SHROOM2Q13796 1616 aa24.22■■□□□ 1.47
LIG1-218ENST00000599322 ERICH3Q5RHP9 1530 aa24.22■■□□□ 1.47
LIG1-218ENST00000599322 FHAD1B1AJZ9 1412 aa24.21■■□□□ 1.47
LIG1-218ENST00000599322 KIF27Q86VH2 1401 aa24.16■■□□□ 1.46
LIG1-218ENST00000599322 RUSC2Q8N2Y8 1516 aa24.03■■□□□ 1.44
LIG1-218ENST00000599322 IGF1RP08069 1367 aa24.01■■□□□ 1.43
LIG1-218ENST00000599322 KIF13AQ9H1H9 1805 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms