RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, humanhuman

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-223ENST00000599223 NISCHQ9Y2I1 1504 aa37.15■■■■□ 3.54
IRF3-223ENST00000599223 CCDC180Q9P1Z9 1646 aa33.4■■■□□ 2.94
IRF3-223ENST00000599223 ABCC9O60706 1549 aa33.34■■■□□ 2.93
IRF3-223ENST00000599223 RB1CC1Q8TDY2 1594 aa31.72■■■□□ 2.67
IRF3-223ENST00000599223 NACADO15069 1562 aa31.5■■■□□ 2.63
IRF3-223ENST00000599223 DNAJC5BQ9UF47 199 aa31.25■■■□□ 2.59
IRF3-223ENST00000599223 UNC13AQ9UPW8 1703 aa31.18■■■□□ 2.58
IRF3-223ENST00000599223 DCAF8L2P0C7V8 631 aa31.16■■■□□ 2.58
IRF3-223ENST00000599223 MYO15BQ96JP2 1530 aa31.05■■■□□ 2.56
IRF3-223ENST00000599223 PABPN1Q86U42 306 aaKnown RBP eCLIP30.97■■■□□ 2.552e-7■■■■□ 22.6
IRF3-223ENST00000599223 BICRAQ9NZM4 1560 aa30.9■■■□□ 2.54
IRF3-223ENST00000599223 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
IRF3-223ENST00000599223 DCAF1Q9Y4B6 1507 aa30.68■■■□□ 2.5
IRF3-223ENST00000599223 SCRIBQ14160 1630 aa30.45■■■□□ 2.47
IRF3-223ENST00000599223 SHROOM4Q9ULL8 1493 aa30.38■■■□□ 2.45
IRF3-223ENST00000599223 CC2D2AQ9P2K1 1620 aa30.16■■■□□ 2.42
IRF3-223ENST00000599223 EIF4G1Q04637 1599 aaKnown RBP30.09■■■□□ 2.41
IRF3-223ENST00000599223 CECR2Q9BXF3 1484 aa30.01■■■□□ 2.4
IRF3-223ENST00000599223 NCAPD3P42695 1498 aa29.05■■■□□ 2.24
IRF3-223ENST00000599223 SMARCA4P51532 1647 aa29.04■■■□□ 2.24
IRF3-223ENST00000599223 ATAD2BQ9ULI0 1458 aa29■■■□□ 2.23
IRF3-223ENST00000599223 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
IRF3-223ENST00000599223 SMARCA2P51531 1590 aa28.91■■■□□ 2.22
IRF3-223ENST00000599223 BAZ1AQ9NRL2 1556 aaPredicted RBP28.83■■■□□ 2.21
IRF3-223ENST00000599223 PEG3Q9GZU2 1588 aa28.74■■■□□ 2.19
IRF3-223ENST00000599223 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
IRF3-223ENST00000599223 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
IRF3-223ENST00000599223 CUX2O14529 1486 aa28.69■■■□□ 2.18
IRF3-223ENST00000599223 NESP48681 1621 aa28.69■■■□□ 2.18
IRF3-223ENST00000599223 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
IRF3-223ENST00000599223 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
IRF3-223ENST00000599223 THOC2Q8NI27 1593 aaKnown RBP28.45■■■□□ 2.15
IRF3-223ENST00000599223 LAMC3Q9Y6N6 1575 aa28.44■■■□□ 2.14
IRF3-223ENST00000599223 KIF21AQ7Z4S6 1674 aa28.38■■■□□ 2.13
IRF3-223ENST00000599223 WIZO95785 1651 aa28.35■■■□□ 2.13
IRF3-223ENST00000599223 PDS5BQ9NTI5 1447 aa28.18■■■□□ 2.1
IRF3-223ENST00000599223 CADPSQ9ULU8 1353 aa28.14■■■□□ 2.1
IRF3-223ENST00000599223 MRC2Q9UBG0 1479 aa28.03■■■□□ 2.08
IRF3-223ENST00000599223 RSF1Q96T23 1441 aaPredicted RBP28.02■■■□□ 2.08
IRF3-223ENST00000599223 WDR62O43379 1518 aa28.01■■■□□ 2.07
IRF3-223ENST00000599223 TOP2AP11388 1531 aaKnown RBP27.96■■■□□ 2.07
IRF3-223ENST00000599223 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
IRF3-223ENST00000599223 CFTRP13569 1480 aa27.88■■■□□ 2.05
IRF3-223ENST00000599223 FANCD2Q9BXW9 1451 aa27.88■■■□□ 2.05
IRF3-223ENST00000599223 PRDM2Q13029 1718 aa27.73■■■□□ 2.03
IRF3-223ENST00000599223 URB2Q14146 1524 aaKnown RBP27.71■■■□□ 2.03
IRF3-223ENST00000599223 CCDC88BA6NC98 1476 aa27.6■■■□□ 2.01
IRF3-223ENST00000599223 TOPBP1Q92547 1522 aa27.38■■□□□ 1.97
IRF3-223ENST00000599223 ZNF608Q9ULD9 1512 aaPredicted RBP27.36■■□□□ 1.97
IRF3-223ENST00000599223 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
IRF3-223ENST00000599223 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
IRF3-223ENST00000599223 DNMBPQ6XZF7 1577 aa27.29■■□□□ 1.96
IRF3-223ENST00000599223 EIF4G3O43432 1585 aaKnown RBP27.26■■□□□ 1.95
IRF3-223ENST00000599223 OSCARQ8IYS5 282 aa27.25■■□□□ 1.95
IRF3-223ENST00000599223 ABCC8Q09428 1581 aa27.2■■□□□ 1.94
IRF3-223ENST00000599223 TARBP1Q13395 1621 aaKnown RBP27.19■■□□□ 1.94
IRF3-223ENST00000599223 RIMBP3CA6NJZ7 1639 aa27.12■■□□□ 1.93
IRF3-223ENST00000599223 RIMBP3BA6NNM3 1639 aa27.12■■□□□ 1.93
IRF3-223ENST00000599223 RIMBP3Q9UFD9 1639 aa27.12■■□□□ 1.93
IRF3-223ENST00000599223 POLA1P09884 1462 aaPredicted RBP27.1■■□□□ 1.93
IRF3-223ENST00000599223 CHD1O14646 1710 aa27.07■■□□□ 1.92
IRF3-223ENST00000599223 AQRO60306 1485 aaKnown RBP eCLIP27.05■■□□□ 1.922e-7■■■■■ 27
IRF3-223ENST00000599223 ARHGEF11O15085 1522 aa27■■□□□ 1.91
IRF3-223ENST00000599223 RAD54L2Q9Y4B4 1467 aa27■■□□□ 1.91
IRF3-223ENST00000599223 CUX1P39880 1505 aa26.95■■□□□ 1.9
IRF3-223ENST00000599223 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
IRF3-223ENST00000599223 SOGA1O94964 1423 aa26.89■■□□□ 1.89
IRF3-223ENST00000599223 TDRD9Q8NDG6 1382 aaKnown RBP26.86■■□□□ 1.89
IRF3-223ENST00000599223 WDR97A6NE52 1622 aa26.85■■□□□ 1.89
IRF3-223ENST00000599223 SNAPC4Q5SXM2 1469 aa26.82■■□□□ 1.88
IRF3-223ENST00000599223 ARAP1Q96P48 1450 aa26.76■■□□□ 1.87
IRF3-223ENST00000599223 FBLN2P98095 1184 aa26.75■■□□□ 1.87
IRF3-223ENST00000599223 CLASP1Q7Z460 1538 aa26.73■■□□□ 1.87
IRF3-223ENST00000599223 PBRM1Q86U86 1689 aa26.72■■□□□ 1.87
IRF3-223ENST00000599223 MAGI1Q96QZ7 1491 aaPredicted RBP26.71■■□□□ 1.87
IRF3-223ENST00000599223 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
IRF3-223ENST00000599223 SUPT5HO00267 1087 aaKnown RBP26.67■■□□□ 1.86
IRF3-223ENST00000599223 ABCA5Q8WWZ7 1642 aa26.65■■□□□ 1.86
IRF3-223ENST00000599223 CYB5RLQ6IPT4 315 aa26.65■■□□□ 1.86
IRF3-223ENST00000599223 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
IRF3-223ENST00000599223 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
IRF3-223ENST00000599223 ABCA10Q8WWZ4 1543 aa26.61■■□□□ 1.85
IRF3-223ENST00000599223 GAPVD1Q14C86 1478 aa26.6■■□□□ 1.85
IRF3-223ENST00000599223 CHMP7Q8WUX9 453 aaPredicted RBP26.54■■□□□ 1.84
IRF3-223ENST00000599223 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
IRF3-223ENST00000599223 TOP2BQ02880 1626 aa26.5■■□□□ 1.83
IRF3-223ENST00000599223 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
IRF3-223ENST00000599223 WRNQ14191 1432 aaPredicted RBP eCLIP26.43■■□□□ 1.82
IRF3-223ENST00000599223 GRIN2AQ12879 1464 aa26.39■■□□□ 1.82
IRF3-223ENST00000599223 CEP170Q5SW79 1584 aa26.36■■□□□ 1.81
IRF3-223ENST00000599223 ERCC6L2Q5T890 1561 aa26.34■■□□□ 1.81
IRF3-223ENST00000599223 TRHP20396 242 aaPredicted RBP26.32■■□□□ 1.8
IRF3-223ENST00000599223 NUP160Q12769 1436 aa26.31■■□□□ 1.8
IRF3-223ENST00000599223 ERICH3Q5RHP9 1530 aa26.26■■□□□ 1.79
IRF3-223ENST00000599223 SHROOM2Q13796 1616 aa26.25■■□□□ 1.79
IRF3-223ENST00000599223 FHAD1B1AJZ9 1412 aa26.24■■□□□ 1.79
IRF3-223ENST00000599223 RUSC2Q8N2Y8 1516 aa26.09■■□□□ 1.77
IRF3-223ENST00000599223 PRG4Q92954 1404 aaPredicted RBP25.99■■□□□ 1.75
IRF3-223ENST00000599223 KIF13AQ9H1H9 1805 aa25.92■■□□□ 1.74
IRF3-223ENST00000599223 CUL7Q14999 1698 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms