RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 NISCHQ9Y2I1 1504 aa43.64■■■■■ 4.58
LIG1-216ENST00000598938 ABCC9O60706 1549 aa39.26■■■■□ 3.88
LIG1-216ENST00000598938 CCDC180Q9P1Z9 1646 aa39.16■■■■□ 3.86
LIG1-216ENST00000598938 RB1CC1Q8TDY2 1594 aa37.38■■■■□ 3.58
LIG1-216ENST00000598938 DNAJC5BQ9UF47 199 aa37.07■■■■□ 3.52
LIG1-216ENST00000598938 NACADO15069 1562 aa37.04■■■■□ 3.52
LIG1-216ENST00000598938 UNC13AQ9UPW8 1703 aa36.54■■■■□ 3.44
LIG1-216ENST00000598938 MYO15BQ96JP2 1530 aa36.49■■■■□ 3.43
LIG1-216ENST00000598938 ZCCHC6Q5VYS8 1495 aaKnown RBP36.44■■■■□ 3.42
LIG1-216ENST00000598938 DCAF8L2P0C7V8 631 aa36.41■■■■□ 3.42
LIG1-216ENST00000598938 PABPN1Q86U42 306 aaKnown RBP eCLIP36.37■■■■□ 3.41
LIG1-216ENST00000598938 BICRAQ9NZM4 1560 aa36.25■■■■□ 3.39
LIG1-216ENST00000598938 DCAF1Q9Y4B6 1507 aa36.16■■■■□ 3.38
LIG1-216ENST00000598938 SHROOM4Q9ULL8 1493 aa35.92■■■■□ 3.34
LIG1-216ENST00000598938 CC2D2AQ9P2K1 1620 aa35.55■■■■□ 3.28
LIG1-216ENST00000598938 CECR2Q9BXF3 1484 aa35.47■■■■□ 3.27
LIG1-216ENST00000598938 SCRIBQ14160 1630 aa35.45■■■■□ 3.27
LIG1-216ENST00000598938 EIF4G1Q04637 1599 aaKnown RBP35.4■■■■□ 3.26
LIG1-216ENST00000598938 DNAJC5Q9H3Z4 198 aa34.44■■■■□ 3.1
LIG1-216ENST00000598938 CUX2O14529 1486 aa34.17■■■■□ 3.06
LIG1-216ENST00000598938 NCAPD3P42695 1498 aa34.15■■■■□ 3.06
LIG1-216ENST00000598938 ERCC6Q03468 1493 aa33.98■■■■□ 3.03
LIG1-216ENST00000598938 ATAD2BQ9ULI0 1458 aa33.95■■■■□ 3.02
LIG1-216ENST00000598938 HMGXB3Q12766 1538 aa33.93■■■■□ 3.02
LIG1-216ENST00000598938 SMARCA2P51531 1590 aa33.91■■■■□ 3.02
LIG1-216ENST00000598938 SMARCA4P51532 1647 aa33.86■■■■□ 3.01
LIG1-216ENST00000598938 BAZ1AQ9NRL2 1556 aaPredicted RBP33.8■■■■□ 3
LIG1-216ENST00000598938 MROH2BQ7Z745 1585 aa33.64■■■□□ 2.98
LIG1-216ENST00000598938 PEG3Q9GZU2 1588 aa33.62■■■□□ 2.97
LIG1-216ENST00000598938 NESP48681 1621 aa33.61■■■□□ 2.97
LIG1-216ENST00000598938 BAZ1BQ9UIG0 1483 aaKnown RBP33.61■■■□□ 2.97
LIG1-216ENST00000598938 THOC2Q8NI27 1593 aaKnown RBP33.51■■■□□ 2.95
LIG1-216ENST00000598938 LAMC3Q9Y6N6 1575 aa33.51■■■□□ 2.95
LIG1-216ENST00000598938 RSF1Q96T23 1441 aaPredicted RBP33.37■■■□□ 2.93
LIG1-216ENST00000598938 KIF21AQ7Z4S6 1674 aa33.29■■■□□ 2.92
LIG1-216ENST00000598938 WIZO95785 1651 aa33.28■■■□□ 2.92
LIG1-216ENST00000598938 PDS5BQ9NTI5 1447 aa33.25■■■□□ 2.91
LIG1-216ENST00000598938 CADPSQ9ULU8 1353 aa33.04■■■□□ 2.88
LIG1-216ENST00000598938 MRC2Q9UBG0 1479 aa32.98■■■□□ 2.87
LIG1-216ENST00000598938 TOP2AP11388 1531 aaKnown RBP32.97■■■□□ 2.87
LIG1-216ENST00000598938 WDR62O43379 1518 aa32.96■■■□□ 2.87
LIG1-216ENST00000598938 CEP164Q9UPV0 1460 aa32.78■■■□□ 2.84
LIG1-216ENST00000598938 SUPT5HO00267 1087 aaKnown RBP32.71■■■□□ 2.83
LIG1-216ENST00000598938 FANCD2Q9BXW9 1451 aa32.67■■■□□ 2.82
LIG1-216ENST00000598938 TRIM41Q8WV44 630 aa32.64■■■□□ 2.82
LIG1-216ENST00000598938 CFTRP13569 1480 aa32.62■■■□□ 2.81
LIG1-216ENST00000598938 CCDC88BA6NC98 1476 aa32.57■■■□□ 2.8
LIG1-216ENST00000598938 PRDM2Q13029 1718 aa32.42■■■□□ 2.78
LIG1-216ENST00000598938 URB2Q14146 1524 aaKnown RBP32.41■■■□□ 2.78
LIG1-216ENST00000598938 OSCARQ8IYS5 282 aa32.4■■■□□ 2.78
LIG1-216ENST00000598938 IFT140Q96RY7 1462 aa32.15■■■□□ 2.74
LIG1-216ENST00000598938 RIMBP3CA6NJZ7 1639 aa32.1■■■□□ 2.73
LIG1-216ENST00000598938 RIMBP3BA6NNM3 1639 aa32.1■■■□□ 2.73
LIG1-216ENST00000598938 RIMBP3Q9UFD9 1639 aa32.1■■■□□ 2.73
LIG1-216ENST00000598938 ZNF608Q9ULD9 1512 aaPredicted RBP32.03■■■□□ 2.72
LIG1-216ENST00000598938 ABCC8Q09428 1581 aa32.02■■■□□ 2.72
LIG1-216ENST00000598938 TOPBP1Q92547 1522 aa32.02■■■□□ 2.72
LIG1-216ENST00000598938 ARHGEF11O15085 1522 aa31.95■■■□□ 2.71
LIG1-216ENST00000598938 EIF4G3O43432 1585 aaKnown RBP31.95■■■□□ 2.71
LIG1-216ENST00000598938 DNMBPQ6XZF7 1577 aa31.92■■■□□ 2.7
LIG1-216ENST00000598938 TARBP1Q13395 1621 aaKnown RBP31.81■■■□□ 2.68
LIG1-216ENST00000598938 CHD1O14646 1710 aa31.79■■■□□ 2.68
LIG1-216ENST00000598938 AQRO60306 1485 aaKnown RBP eCLIP31.67■■■□□ 2.662e-6■■■■□ 23.2
LIG1-216ENST00000598938 POLA1P09884 1462 aaPredicted RBP31.66■■■□□ 2.66
LIG1-216ENST00000598938 WDR97A6NE52 1622 aa31.6■■■□□ 2.65
LIG1-216ENST00000598938 CYB5RLQ6IPT4 315 aa31.58■■■□□ 2.65
LIG1-216ENST00000598938 ARAP1Q96P48 1450 aa31.58■■■□□ 2.65
LIG1-216ENST00000598938 CUX1P39880 1505 aa31.54■■■□□ 2.64
LIG1-216ENST00000598938 SOGA1O94964 1423 aa31.47■■■□□ 2.63
LIG1-216ENST00000598938 RAD54L2Q9Y4B4 1467 aa31.46■■■□□ 2.63
LIG1-216ENST00000598938 FBLN2P98095 1184 aa31.46■■■□□ 2.63
LIG1-216ENST00000598938 WRNQ14191 1432 aaPredicted RBP eCLIP31.45■■■□□ 2.63
LIG1-216ENST00000598938 CLASP1Q7Z460 1538 aa31.42■■■□□ 2.62
LIG1-216ENST00000598938 TDRD9Q8NDG6 1382 aaKnown RBP31.4■■■□□ 2.62
LIG1-216ENST00000598938 SNAPC4Q5SXM2 1469 aa31.4■■■□□ 2.62
LIG1-216ENST00000598938 FGD5Q6ZNL6 1462 aa31.4■■■□□ 2.62
LIG1-216ENST00000598938 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
LIG1-216ENST00000598938 SYNJ1O43426 1573 aa31.39■■■□□ 2.61
LIG1-216ENST00000598938 TOP2BQ02880 1626 aa31.37■■■□□ 2.61
LIG1-216ENST00000598938 BIVM-ERCC5R4GMW8 1640 aa31.36■■■□□ 2.61
LIG1-216ENST00000598938 TRHP20396 242 aaPredicted RBP31.35■■■□□ 2.61
LIG1-216ENST00000598938 GRIN2BQ13224 1484 aa31.3■■■□□ 2.6
LIG1-216ENST00000598938 SYNJ2O15056 1496 aa31.26■■■□□ 2.59
LIG1-216ENST00000598938 CHMP7Q8WUX9 453 aaPredicted RBP31.24■■■□□ 2.59
LIG1-216ENST00000598938 PBRM1Q86U86 1689 aa31.22■■■□□ 2.59
LIG1-216ENST00000598938 GAPVD1Q14C86 1478 aa31.12■■■□□ 2.57
LIG1-216ENST00000598938 ABCA10Q8WWZ4 1543 aa31.1■■■□□ 2.57
LIG1-216ENST00000598938 ABCA5Q8WWZ7 1642 aa31.09■■■□□ 2.57
LIG1-216ENST00000598938 GRIN2AQ12879 1464 aa30.9■■■□□ 2.54
LIG1-216ENST00000598938 ADAMTS12P58397 1594 aa30.87■■■□□ 2.53
LIG1-216ENST00000598938 NUP160Q12769 1436 aa30.82■■■□□ 2.52
LIG1-216ENST00000598938 CEP170Q5SW79 1584 aa30.8■■■□□ 2.52
LIG1-216ENST00000598938 SHROOM2Q13796 1616 aa30.8■■■□□ 2.52
LIG1-216ENST00000598938 ERCC6L2Q5T890 1561 aa30.79■■■□□ 2.52
LIG1-216ENST00000598938 CHIC1Q5VXU3 224 aa30.77■■■□□ 2.52
LIG1-216ENST00000598938 AEBP2Q6ZN18 517 aaPredicted RBP30.76■■■□□ 2.51
LIG1-216ENST00000598938 KIF27Q86VH2 1401 aa30.75■■■□□ 2.51
LIG1-216ENST00000598938 ERICH3Q5RHP9 1530 aa30.73■■■□□ 2.51
LIG1-216ENST00000598938 FHAD1B1AJZ9 1412 aa30.73■■■□□ 2.51
LIG1-216ENST00000598938 IGF1RP08069 1367 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms