RNA–Protein interactions for RNA: ENST00000598896.5

SYMPK-212, Transcript of symplekin, humanhuman

TSL 1 (best)

Gene SYMPK, Length 1,899 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYMPK-212ENST00000598896 NISCHQ9Y2I1 1504 aa53.85■■■■■ 6.21
SYMPK-212ENST00000598896 CCDC180Q9P1Z9 1646 aa47.12■■■■■ 5.13
SYMPK-212ENST00000598896 ZCCHC6Q5VYS8 1495 aaKnown RBP45.18■■■■■ 4.82
SYMPK-212ENST00000598896 ABCC9O60706 1549 aa44.87■■■■■ 4.77
SYMPK-212ENST00000598896 DCAF1Q9Y4B6 1507 aa44.5■■■■■ 4.71
SYMPK-212ENST00000598896 DCAF8L2P0C7V8 631 aa44.5■■■■■ 4.71
SYMPK-212ENST00000598896 MYO15BQ96JP2 1530 aa44.1■■■■■ 4.65
SYMPK-212ENST00000598896 NACADO15069 1562 aa43.94■■■■■ 4.62
SYMPK-212ENST00000598896 SHROOM4Q9ULL8 1493 aa43.68■■■■■ 4.58
SYMPK-212ENST00000598896 RB1CC1Q8TDY2 1594 aa43.65■■■■■ 4.58
SYMPK-212ENST00000598896 SCRIBQ14160 1630 aa43.31■■■■■ 4.52
SYMPK-212ENST00000598896 UNC13AQ9UPW8 1703 aa42.85■■■■■ 4.45
SYMPK-212ENST00000598896 BICRAQ9NZM4 1560 aa42.41■■■■■ 4.38
SYMPK-212ENST00000598896 PABPN1Q86U42 306 aaKnown RBP eCLIP42.22■■■■■ 4.357e-8■□□□□ 9.1
SYMPK-212ENST00000598896 CECR2Q9BXF3 1484 aa41.9■■■■■ 4.3
SYMPK-212ENST00000598896 SUPT5HO00267 1087 aaKnown RBP41.8■■■■■ 4.28
SYMPK-212ENST00000598896 RSF1Q96T23 1441 aaPredicted RBP41.64■■■■■ 4.26
SYMPK-212ENST00000598896 MROH2BQ7Z745 1585 aa41.62■■■■■ 4.25
SYMPK-212ENST00000598896 BAZ1AQ9NRL2 1556 aaPredicted RBP41.59■■■■■ 4.25
SYMPK-212ENST00000598896 SMARCA4P51532 1647 aa41.48■■■■■ 4.23
SYMPK-212ENST00000598896 WIZO95785 1651 aa41.27■■■■■ 4.2
SYMPK-212ENST00000598896 EIF4G1Q04637 1599 aaKnown RBP41.13■■■■■ 4.18
SYMPK-212ENST00000598896 PEG3Q9GZU2 1588 aa40.99■■■■■ 4.15
SYMPK-212ENST00000598896 ATAD2BQ9ULI0 1458 aa40.87■■■■■ 4.13
SYMPK-212ENST00000598896 SMARCA2P51531 1590 aa40.81■■■■■ 4.12
SYMPK-212ENST00000598896 TOP2AP11388 1531 aaKnown RBP40.8■■■■■ 4.12
SYMPK-212ENST00000598896 CC2D2AQ9P2K1 1620 aa40.61■■■■■ 4.09
SYMPK-212ENST00000598896 BAZ1BQ9UIG0 1483 aaKnown RBP40.61■■■■■ 4.09
SYMPK-212ENST00000598896 NCAPD3P42695 1498 aa40.56■■■■■ 4.08
SYMPK-212ENST00000598896 HMGXB3Q12766 1538 aa40.5■■■■■ 4.07
SYMPK-212ENST00000598896 CCDC88BA6NC98 1476 aa40.37■■■■■ 4.05
SYMPK-212ENST00000598896 DNAJC5BQ9UF47 199 aa39.9■■■■□ 3.98
SYMPK-212ENST00000598896 CHIC1Q5VXU3 224 aa39.84■■■■□ 3.97
SYMPK-212ENST00000598896 CFTRP13569 1480 aa39.58■■■■□ 3.93
SYMPK-212ENST00000598896 CADPSQ9ULU8 1353 aa39.48■■■■□ 3.91
SYMPK-212ENST00000598896 ABCC8Q09428 1581 aa39.45■■■■□ 3.91
SYMPK-212ENST00000598896 PRDM2Q13029 1718 aa39.39■■■■□ 3.9
SYMPK-212ENST00000598896 NESP48681 1621 aa39.31■■■■□ 3.88
SYMPK-212ENST00000598896 TRIM41Q8WV44 630 aa39.3■■■■□ 3.88
SYMPK-212ENST00000598896 LAMC3Q9Y6N6 1575 aa39.25■■■■□ 3.87
SYMPK-212ENST00000598896 WRNQ14191 1432 aaPredicted RBP eCLIP39.18■■■■□ 3.86
SYMPK-212ENST00000598896 SYNJ1O43426 1573 aa39.09■■■■□ 3.85
SYMPK-212ENST00000598896 FANCD2Q9BXW9 1451 aa39.07■■■■□ 3.85
SYMPK-212ENST00000598896 TOP2BQ02880 1626 aa38.94■■■■□ 3.82
SYMPK-212ENST00000598896 CUX1P39880 1505 aa38.93■■■■□ 3.82
SYMPK-212ENST00000598896 BIVM-ERCC5R4GMW8 1640 aa38.91■■■■□ 3.82
SYMPK-212ENST00000598896 PDS5BQ9NTI5 1447 aa38.91■■■■□ 3.82
SYMPK-212ENST00000598896 CEP164Q9UPV0 1460 aa38.85■■■■□ 3.81
SYMPK-212ENST00000598896 KIF21AQ7Z4S6 1674 aa38.85■■■■□ 3.81
SYMPK-212ENST00000598896 DNMBPQ6XZF7 1577 aa38.67■■■■□ 3.78
SYMPK-212ENST00000598896 URB2Q14146 1524 aaKnown RBP38.63■■■■□ 3.77
SYMPK-212ENST00000598896 TOPBP1Q92547 1522 aa38.62■■■■□ 3.77
SYMPK-212ENST00000598896 SOGA1O94964 1423 aa38.62■■■■□ 3.77
SYMPK-212ENST00000598896 FAM9AQ8IZU1 332 aaPredicted RBP38.6■■■■□ 3.77
SYMPK-212ENST00000598896 FGD5Q6ZNL6 1462 aa38.54■■■■□ 3.76
SYMPK-212ENST00000598896 RUSC2Q8N2Y8 1516 aa38.51■■■■□ 3.76
SYMPK-212ENST00000598896 MRC2Q9UBG0 1479 aa38.47■■■■□ 3.75
SYMPK-212ENST00000598896 ERCC6Q03468 1493 aa38.46■■■■□ 3.75
SYMPK-212ENST00000598896 POLA1P09884 1462 aaPredicted RBP38.41■■■■□ 3.74
SYMPK-212ENST00000598896 EEA1Q15075 1411 aa38.39■■■■□ 3.74
SYMPK-212ENST00000598896 LOC105371045A0A1W2PR82 267 aa38.32■■■■□ 3.72
SYMPK-212ENST00000598896 WDR62O43379 1518 aa38.31■■■■□ 3.72
SYMPK-212ENST00000598896 THOC2Q8NI27 1593 aaKnown RBP38.3■■■■□ 3.72
SYMPK-212ENST00000598896 RAD54L2Q9Y4B4 1467 aa38.28■■■■□ 3.72
SYMPK-212ENST00000598896 CSRNP3Q8WYN3 585 aa38.22■■■■□ 3.71
SYMPK-212ENST00000598896 CUX2O14529 1486 aa38.21■■■■□ 3.71
SYMPK-212ENST00000598896 KIF27Q86VH2 1401 aa38.2■■■■□ 3.71
SYMPK-212ENST00000598896 ABCA10Q8WWZ4 1543 aa38.18■■■■□ 3.7
SYMPK-212ENST00000598896 WDR97A6NE52 1622 aa38.15■■■■□ 3.7
SYMPK-212ENST00000598896 TARBP1Q13395 1621 aaKnown RBP38.1■■■■□ 3.69
SYMPK-212ENST00000598896 EHMT2Q96KQ7 1210 aa38.09■■■■□ 3.69
SYMPK-212ENST00000598896 KIF21BO75037 1637 aa37.98■■■■□ 3.67
SYMPK-212ENST00000598896 ABCA5Q8WWZ7 1642 aa37.94■■■■□ 3.66
SYMPK-212ENST00000598896 IFT140Q96RY7 1462 aa37.92■■■■□ 3.66
SYMPK-212ENST00000598896 TDRD9Q8NDG6 1382 aaKnown RBP37.92■■■■□ 3.66
SYMPK-212ENST00000598896 IGF1RP08069 1367 aa37.91■■■■□ 3.66
SYMPK-212ENST00000598896 PRXQ9BXM0 1461 aa37.9■■■■□ 3.66
SYMPK-212ENST00000598896 GOLGA3Q08378 1498 aa37.88■■■■□ 3.65
SYMPK-212ENST00000598896 RAPGEF2Q9Y4G8 1499 aa37.84■■■■□ 3.65
SYMPK-212ENST00000598896 GAPVD1Q14C86 1478 aa37.83■■■■□ 3.65
SYMPK-212ENST00000598896 ZNF608Q9ULD9 1512 aaPredicted RBP37.8■■■■□ 3.64
SYMPK-212ENST00000598896 ERICH3Q5RHP9 1530 aa37.78■■■■□ 3.64
SYMPK-212ENST00000598896 AQRO60306 1485 aaKnown RBP eCLIP37.75■■■■□ 3.636e-8■■■■■ 38.3
SYMPK-212ENST00000598896 CARMIL1Q5VZK9 1371 aa37.7■■■■□ 3.63
SYMPK-212ENST00000598896 PBRM1Q86U86 1689 aa37.69■■■■□ 3.62
SYMPK-212ENST00000598896 UBTFP17480 764 aaKnown RBP37.69■■■■□ 3.62
SYMPK-212ENST00000598896 TNIKQ9UKE5 1360 aa37.68■■■■□ 3.62
SYMPK-212ENST00000598896 CUL7Q14999 1698 aa37.67■■■■□ 3.62
SYMPK-212ENST00000598896 EIF4G3O43432 1585 aaKnown RBP37.67■■■■□ 3.62
SYMPK-212ENST00000598896 GRIN2BQ13224 1484 aa37.58■■■■□ 3.61
SYMPK-212ENST00000598896 CEP162Q5TB80 1403 aa37.48■■■■□ 3.59
SYMPK-212ENST00000598896 ADAMTS12P58397 1594 aa37.47■■■■□ 3.59
SYMPK-212ENST00000598896 SNAPC4Q5SXM2 1469 aa37.4■■■■□ 3.58
SYMPK-212ENST00000598896 FHAD1B1AJZ9 1412 aa37.4■■■■□ 3.58
SYMPK-212ENST00000598896 MAGI1Q96QZ7 1491 aaPredicted RBP37.31■■■■□ 3.56
SYMPK-212ENST00000598896 CLIP1P30622 1438 aa37.26■■■■□ 3.56
SYMPK-212ENST00000598896 CTTNBP2Q8WZ74 1663 aa37.23■■■■□ 3.55
SYMPK-212ENST00000598896 RANGAP1P46060 587 aaPredicted RBP37.22■■■■□ 3.55
SYMPK-212ENST00000598896 SYNJ2O15056 1496 aa37.17■■■■□ 3.54
SYMPK-212ENST00000598896 GRIN2AQ12879 1464 aa37.15■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms