RNA–Protein interactions for RNA: ENST00000597180.1

IRF3-216, Transcript of interferon regulatory factor 3, humanhuman

TSL 5

Gene IRF3, Length 301 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-216ENST00000597180 NISCHQ9Y2I1 1504 aa43.99■■■■■ 4.63
IRF3-216ENST00000597180 CCDC180Q9P1Z9 1646 aa39.16■■■■□ 3.86
IRF3-216ENST00000597180 ABCC9O60706 1549 aa38.06■■■■□ 3.68
IRF3-216ENST00000597180 NACADO15069 1562 aa36.74■■■■□ 3.47
IRF3-216ENST00000597180 RB1CC1Q8TDY2 1594 aa36.74■■■■□ 3.47
IRF3-216ENST00000597180 ZCCHC6Q5VYS8 1495 aaKnown RBP36.69■■■■□ 3.46
IRF3-216ENST00000597180 MYO15BQ96JP2 1530 aa36.57■■■■□ 3.44
IRF3-216ENST00000597180 DCAF8L2P0C7V8 631 aa36.53■■■■□ 3.44
IRF3-216ENST00000597180 DCAF1Q9Y4B6 1507 aa36.45■■■■□ 3.43
IRF3-216ENST00000597180 UNC13AQ9UPW8 1703 aa36.01■■■■□ 3.36
IRF3-216ENST00000597180 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
IRF3-216ENST00000597180 SCRIBQ14160 1630 aa35.64■■■■□ 3.3
IRF3-216ENST00000597180 PABPN1Q86U42 306 aaKnown RBP eCLIP35.53■■■■□ 3.28
IRF3-216ENST00000597180 SHROOM4Q9ULL8 1493 aa35.29■■■■□ 3.24
IRF3-216ENST00000597180 DNAJC5BQ9UF47 199 aa34.81■■■■□ 3.16
IRF3-216ENST00000597180 EIF4G1Q04637 1599 aaKnown RBP34.66■■■■□ 3.14
IRF3-216ENST00000597180 CC2D2AQ9P2K1 1620 aa34.51■■■■□ 3.11
IRF3-216ENST00000597180 CECR2Q9BXF3 1484 aa34.22■■■■□ 3.07
IRF3-216ENST00000597180 SMARCA4P51532 1647 aa34.15■■■■□ 3.06
IRF3-216ENST00000597180 BAZ1AQ9NRL2 1556 aaPredicted RBP34.1■■■■□ 3.05
IRF3-216ENST00000597180 MROH2BQ7Z745 1585 aa33.89■■■■□ 3.02
IRF3-216ENST00000597180 ATAD2BQ9ULI0 1458 aa33.88■■■■□ 3.01
IRF3-216ENST00000597180 SMARCA2P51531 1590 aa33.88■■■■□ 3.01
IRF3-216ENST00000597180 NCAPD3P42695 1498 aa33.86■■■■□ 3.01
IRF3-216ENST00000597180 PEG3Q9GZU2 1588 aa33.84■■■■□ 3.01
IRF3-216ENST00000597180 HMGXB3Q12766 1538 aa33.74■■■□□ 2.99
IRF3-216ENST00000597180 BAZ1BQ9UIG0 1483 aaKnown RBP33.6■■■□□ 2.97
IRF3-216ENST00000597180 WIZO95785 1651 aa33.56■■■□□ 2.96
IRF3-216ENST00000597180 RSF1Q96T23 1441 aaPredicted RBP33.53■■■□□ 2.96
IRF3-216ENST00000597180 TOP2AP11388 1531 aaKnown RBP33.21■■■□□ 2.91
IRF3-216ENST00000597180 NESP48681 1621 aa32.99■■■□□ 2.87
IRF3-216ENST00000597180 LAMC3Q9Y6N6 1575 aa32.98■■■□□ 2.87
IRF3-216ENST00000597180 CADPSQ9ULU8 1353 aa32.84■■■□□ 2.85
IRF3-216ENST00000597180 ERCC6Q03468 1493 aa32.79■■■□□ 2.84
IRF3-216ENST00000597180 CCDC88BA6NC98 1476 aa32.78■■■□□ 2.84
IRF3-216ENST00000597180 CFTRP13569 1480 aa32.71■■■□□ 2.83
IRF3-216ENST00000597180 PDS5BQ9NTI5 1447 aa32.69■■■□□ 2.82
IRF3-216ENST00000597180 KIF21AQ7Z4S6 1674 aa32.69■■■□□ 2.82
IRF3-216ENST00000597180 SUPT5HO00267 1087 aaKnown RBP32.64■■■□□ 2.82
IRF3-216ENST00000597180 PRDM2Q13029 1718 aa32.62■■■□□ 2.81
IRF3-216ENST00000597180 THOC2Q8NI27 1593 aaKnown RBP32.54■■■□□ 2.8
IRF3-216ENST00000597180 FANCD2Q9BXW9 1451 aa32.48■■■□□ 2.79
IRF3-216ENST00000597180 CUX2O14529 1486 aa32.47■■■□□ 2.79
IRF3-216ENST00000597180 CEP164Q9UPV0 1460 aa32.44■■■□□ 2.78
IRF3-216ENST00000597180 MRC2Q9UBG0 1479 aa32.38■■■□□ 2.77
IRF3-216ENST00000597180 WDR62O43379 1518 aa32.31■■■□□ 2.76
IRF3-216ENST00000597180 URB2Q14146 1524 aaKnown RBP32.16■■■□□ 2.74
IRF3-216ENST00000597180 ABCC8Q09428 1581 aa32.01■■■□□ 2.71
IRF3-216ENST00000597180 TOPBP1Q92547 1522 aa32■■■□□ 2.71
IRF3-216ENST00000597180 DNMBPQ6XZF7 1577 aa31.99■■■□□ 2.71
IRF3-216ENST00000597180 CUX1P39880 1505 aa31.8■■■□□ 2.68
IRF3-216ENST00000597180 IFT140Q96RY7 1462 aa31.75■■■□□ 2.67
IRF3-216ENST00000597180 POLA1P09884 1462 aaPredicted RBP31.72■■■□□ 2.67
IRF3-216ENST00000597180 TARBP1Q13395 1621 aaKnown RBP31.68■■■□□ 2.66
IRF3-216ENST00000597180 FGD5Q6ZNL6 1462 aa31.65■■■□□ 2.66
IRF3-216ENST00000597180 BIVM-ERCC5R4GMW8 1640 aa31.6■■■□□ 2.65
IRF3-216ENST00000597180 WRNQ14191 1432 aaPredicted RBP eCLIP31.59■■■□□ 2.65
IRF3-216ENST00000597180 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
IRF3-216ENST00000597180 TOP2BQ02880 1626 aa31.58■■■□□ 2.65
IRF3-216ENST00000597180 SYNJ1O43426 1573 aa31.56■■■□□ 2.64
IRF3-216ENST00000597180 SOGA1O94964 1423 aa31.56■■■□□ 2.64
IRF3-216ENST00000597180 RAD54L2Q9Y4B4 1467 aa31.55■■■□□ 2.64
IRF3-216ENST00000597180 EIF4G3O43432 1585 aaKnown RBP31.52■■■□□ 2.64
IRF3-216ENST00000597180 WDR97A6NE52 1622 aa31.49■■■□□ 2.63
IRF3-216ENST00000597180 AQRO60306 1485 aaKnown RBP eCLIP31.4■■■□□ 2.622e-9■■■■□ 26.5
IRF3-216ENST00000597180 ABCA10Q8WWZ4 1543 aa31.38■■■□□ 2.61
IRF3-216ENST00000597180 TDRD9Q8NDG6 1382 aaKnown RBP31.34■■■□□ 2.61
IRF3-216ENST00000597180 ABCA5Q8WWZ7 1642 aa31.28■■■□□ 2.6
IRF3-216ENST00000597180 DNAJC5Q9H3Z4 198 aa31.28■■■□□ 2.6
IRF3-216ENST00000597180 PBRM1Q86U86 1689 aa31.24■■■□□ 2.59
IRF3-216ENST00000597180 GAPVD1Q14C86 1478 aa31.22■■■□□ 2.59
IRF3-216ENST00000597180 GRIN2BQ13224 1484 aa31.21■■■□□ 2.59
IRF3-216ENST00000597180 CHD1O14646 1710 aa31.15■■■□□ 2.58
IRF3-216ENST00000597180 SNAPC4Q5SXM2 1469 aa31.14■■■□□ 2.57
IRF3-216ENST00000597180 MAGI1Q96QZ7 1491 aaPredicted RBP31.14■■■□□ 2.57
IRF3-216ENST00000597180 OSCARQ8IYS5 282 aa31.06■■■□□ 2.56
IRF3-216ENST00000597180 ERICH3Q5RHP9 1530 aa31.02■■■□□ 2.56
IRF3-216ENST00000597180 SYNJ2O15056 1496 aa31■■■□□ 2.55
IRF3-216ENST00000597180 ADAMTS12P58397 1594 aa30.96■■■□□ 2.55
IRF3-216ENST00000597180 KIF27Q86VH2 1401 aa30.93■■■□□ 2.54
IRF3-216ENST00000597180 FBLN2P98095 1184 aa30.92■■■□□ 2.54
IRF3-216ENST00000597180 CHMP7Q8WUX9 453 aaPredicted RBP30.89■■■□□ 2.54
IRF3-216ENST00000597180 FHAD1B1AJZ9 1412 aa30.86■■■□□ 2.53
IRF3-216ENST00000597180 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
IRF3-216ENST00000597180 GRIN2AQ12879 1464 aa30.82■■■□□ 2.52
IRF3-216ENST00000597180 CLASP1Q7Z460 1538 aa30.78■■■□□ 2.52
IRF3-216ENST00000597180 CUL7Q14999 1698 aa30.78■■■□□ 2.52
IRF3-216ENST00000597180 IGF1RP08069 1367 aa30.78■■■□□ 2.52
IRF3-216ENST00000597180 CEP170Q5SW79 1584 aa30.68■■■□□ 2.5
IRF3-216ENST00000597180 NUP160Q12769 1436 aa30.68■■■□□ 2.5
IRF3-216ENST00000597180 RUSC2Q8N2Y8 1516 aa30.68■■■□□ 2.5
IRF3-216ENST00000597180 RIMBP3CA6NJZ7 1639 aa30.65■■■□□ 2.5
IRF3-216ENST00000597180 RIMBP3BA6NNM3 1639 aa30.65■■■□□ 2.5
IRF3-216ENST00000597180 RIMBP3Q9UFD9 1639 aa30.65■■■□□ 2.5
IRF3-216ENST00000597180 ARHGEF11O15085 1522 aa30.63■■■□□ 2.49
IRF3-216ENST00000597180 CARMIL1Q5VZK9 1371 aa30.59■■■□□ 2.49
IRF3-216ENST00000597180 CHIC1Q5VXU3 224 aa30.57■■■□□ 2.48
IRF3-216ENST00000597180 SHROOM2Q13796 1616 aa30.5■■■□□ 2.47
IRF3-216ENST00000597180 RAPGEF2Q9Y4G8 1499 aa30.45■■■□□ 2.47
IRF3-216ENST00000597180 EEA1Q15075 1411 aa30.43■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms