RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NISCHQ9Y2I1 1504 aa37.21■■■■□ 3.55
TRIM28-205ENST00000595028 ABCC9O60706 1549 aa33.4■■■□□ 2.94
TRIM28-205ENST00000595028 CCDC180Q9P1Z9 1646 aa33.27■■■□□ 2.92
TRIM28-205ENST00000595028 DNAJC5BQ9UF47 199 aa32.04■■■□□ 2.72
TRIM28-205ENST00000595028 RB1CC1Q8TDY2 1594 aa31.43■■■□□ 2.62
TRIM28-205ENST00000595028 NACADO15069 1562 aa31.26■■■□□ 2.6
TRIM28-205ENST00000595028 MYO15BQ96JP2 1530 aa31.03■■■□□ 2.56
TRIM28-205ENST00000595028 DCAF8L2P0C7V8 631 aa31■■■□□ 2.55
TRIM28-205ENST00000595028 ZCCHC6Q5VYS8 1495 aaKnown RBP31■■■□□ 2.55
TRIM28-205ENST00000595028 PABPN1Q86U42 306 aaKnown RBP eCLIP30.98■■■□□ 2.552e-6■■□□□ 13.9
TRIM28-205ENST00000595028 DCAF1Q9Y4B6 1507 aa30.81■■■□□ 2.52
TRIM28-205ENST00000595028 UNC13AQ9UPW8 1703 aa30.77■■■□□ 2.52
TRIM28-205ENST00000595028 BICRAQ9NZM4 1560 aa30.58■■■□□ 2.49
TRIM28-205ENST00000595028 SCRIBQ14160 1630 aa30.29■■■□□ 2.44
TRIM28-205ENST00000595028 CECR2Q9BXF3 1484 aa30.16■■■□□ 2.42
TRIM28-205ENST00000595028 CC2D2AQ9P2K1 1620 aa30.14■■■□□ 2.41
TRIM28-205ENST00000595028 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
TRIM28-205ENST00000595028 DNAJC5Q9H3Z4 198 aa29.96■■■□□ 2.39
TRIM28-205ENST00000595028 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
TRIM28-205ENST00000595028 CUX2O14529 1486 aa29.08■■■□□ 2.25
TRIM28-205ENST00000595028 SMARCA4P51532 1647 aa28.97■■■□□ 2.23
TRIM28-205ENST00000595028 ERCC6Q03468 1493 aa28.88■■■□□ 2.21
TRIM28-205ENST00000595028 BAZ1AQ9NRL2 1556 aaPredicted RBP28.88■■■□□ 2.21
TRIM28-205ENST00000595028 NCAPD3P42695 1498 aa28.81■■■□□ 2.2
TRIM28-205ENST00000595028 ATAD2BQ9ULI0 1458 aa28.8■■■□□ 2.2
TRIM28-205ENST00000595028 SMARCA2P51531 1590 aa28.79■■■□□ 2.2
TRIM28-205ENST00000595028 HMGXB3Q12766 1538 aa28.72■■■□□ 2.19
TRIM28-205ENST00000595028 PEG3Q9GZU2 1588 aa28.69■■■□□ 2.18
TRIM28-205ENST00000595028 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
TRIM28-205ENST00000595028 BAZ1BQ9UIG0 1483 aaKnown RBP28.57■■■□□ 2.16
TRIM28-205ENST00000595028 NESP48681 1621 aa28.49■■■□□ 2.15
TRIM28-205ENST00000595028 WIZO95785 1651 aa28.37■■■□□ 2.13
TRIM28-205ENST00000595028 THOC2Q8NI27 1593 aaKnown RBP28.35■■■□□ 2.13
TRIM28-205ENST00000595028 TRIM41Q8WV44 630 aa28.34■■■□□ 2.13
TRIM28-205ENST00000595028 RSF1Q96T23 1441 aaPredicted RBP28.25■■■□□ 2.11
TRIM28-205ENST00000595028 LAMC3Q9Y6N6 1575 aa28.13■■■□□ 2.09
TRIM28-205ENST00000595028 KIF21AQ7Z4S6 1674 aa28.1■■■□□ 2.09
TRIM28-205ENST00000595028 TOP2AP11388 1531 aaKnown RBP28.08■■■□□ 2.09
TRIM28-205ENST00000595028 PDS5BQ9NTI5 1447 aa27.99■■■□□ 2.07
TRIM28-205ENST00000595028 CADPSQ9ULU8 1353 aa27.93■■■□□ 2.06
TRIM28-205ENST00000595028 MRC2Q9UBG0 1479 aa27.81■■■□□ 2.04
TRIM28-205ENST00000595028 WDR62O43379 1518 aa27.77■■■□□ 2.04
TRIM28-205ENST00000595028 CFTRP13569 1480 aa27.76■■■□□ 2.04
TRIM28-205ENST00000595028 CCDC88BA6NC98 1476 aa27.69■■■□□ 2.02
TRIM28-205ENST00000595028 PRDM2Q13029 1718 aa27.66■■■□□ 2.02
TRIM28-205ENST00000595028 CEP164Q9UPV0 1460 aa27.65■■■□□ 2.02
TRIM28-205ENST00000595028 FANCD2Q9BXW9 1451 aa27.64■■■□□ 2.02
TRIM28-205ENST00000595028 OSCARQ8IYS5 282 aa27.62■■■□□ 2.01
TRIM28-205ENST00000595028 URB2Q14146 1524 aaKnown RBP27.4■■□□□ 1.98
TRIM28-205ENST00000595028 RIMBP3CA6NJZ7 1639 aa27.38■■□□□ 1.97
TRIM28-205ENST00000595028 RIMBP3BA6NNM3 1639 aa27.38■■□□□ 1.97
TRIM28-205ENST00000595028 RIMBP3Q9UFD9 1639 aa27.38■■□□□ 1.97
TRIM28-205ENST00000595028 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
TRIM28-205ENST00000595028 ARHGEF11O15085 1522 aa27.21■■□□□ 1.95
TRIM28-205ENST00000595028 TOPBP1Q92547 1522 aa27.2■■□□□ 1.94
TRIM28-205ENST00000595028 DNMBPQ6XZF7 1577 aa27.18■■□□□ 1.94
TRIM28-205ENST00000595028 ABCC8Q09428 1581 aa27.16■■□□□ 1.94
TRIM28-205ENST00000595028 ZNF608Q9ULD9 1512 aaPredicted RBP27.08■■□□□ 1.93
TRIM28-205ENST00000595028 IFT140Q96RY7 1462 aa27.07■■□□□ 1.92
TRIM28-205ENST00000595028 CYB5RLQ6IPT4 315 aa27.04■■□□□ 1.92
TRIM28-205ENST00000595028 TRHP20396 242 aaPredicted RBP26.99■■□□□ 1.91
TRIM28-205ENST00000595028 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
TRIM28-205ENST00000595028 TARBP1Q13395 1621 aaKnown RBP26.95■■□□□ 1.91
TRIM28-205ENST00000595028 CUX1P39880 1505 aa26.93■■□□□ 1.9
TRIM28-205ENST00000595028 EIF4G3O43432 1585 aaKnown RBP26.92■■□□□ 1.9
TRIM28-205ENST00000595028 ARAP1Q96P48 1450 aa26.89■■□□□ 1.9
TRIM28-205ENST00000595028 FGD5Q6ZNL6 1462 aa26.87■■□□□ 1.89
TRIM28-205ENST00000595028 CHD1O14646 1710 aa26.85■■□□□ 1.89
TRIM28-205ENST00000595028 RAD54L2Q9Y4B4 1467 aa26.81■■□□□ 1.88
TRIM28-205ENST00000595028 SOGA1O94964 1423 aa26.78■■□□□ 1.88
TRIM28-205ENST00000595028 AEBP2Q6ZN18 517 aaPredicted RBP26.76■■□□□ 1.87
TRIM28-205ENST00000595028 WDR97A6NE52 1622 aa26.76■■□□□ 1.87
TRIM28-205ENST00000595028 AQRO60306 1485 aaKnown RBP eCLIP26.75■■□□□ 1.876e-20■■■■■ 29.1
TRIM28-205ENST00000595028 FBLN2P98095 1184 aa26.7■■□□□ 1.86
TRIM28-205ENST00000595028 BIVM-ERCC5R4GMW8 1640 aa26.68■■□□□ 1.86
TRIM28-205ENST00000595028 TOP2BQ02880 1626 aa26.66■■□□□ 1.86
TRIM28-205ENST00000595028 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
TRIM28-205ENST00000595028 WRNQ14191 1432 aaPredicted RBP eCLIP26.65■■□□□ 1.86
TRIM28-205ENST00000595028 TDRD9Q8NDG6 1382 aaKnown RBP26.64■■□□□ 1.86
TRIM28-205ENST00000595028 ABCA10Q8WWZ4 1543 aa26.6■■□□□ 1.85
TRIM28-205ENST00000595028 ABCA5Q8WWZ7 1642 aa26.56■■□□□ 1.84
TRIM28-205ENST00000595028 PBRM1Q86U86 1689 aa26.55■■□□□ 1.84
TRIM28-205ENST00000595028 SNAPC4Q5SXM2 1469 aa26.55■■□□□ 1.84
TRIM28-205ENST00000595028 GRIN2BQ13224 1484 aa26.54■■□□□ 1.84
TRIM28-205ENST00000595028 MAGI1Q96QZ7 1491 aaPredicted RBP26.52■■□□□ 1.84
TRIM28-205ENST00000595028 CLASP1Q7Z460 1538 aa26.5■■□□□ 1.83
TRIM28-205ENST00000595028 GAPVD1Q14C86 1478 aa26.5■■□□□ 1.83
TRIM28-205ENST00000595028 SYNJ2O15056 1496 aa26.4■■□□□ 1.82
TRIM28-205ENST00000595028 CHMP7Q8WUX9 453 aaPredicted RBP26.36■■□□□ 1.81
TRIM28-205ENST00000595028 ADAMTS12P58397 1594 aa26.33■■□□□ 1.8
TRIM28-205ENST00000595028 ERICH3Q5RHP9 1530 aa26.28■■□□□ 1.8
TRIM28-205ENST00000595028 GRIN2AQ12879 1464 aa26.22■■□□□ 1.79
TRIM28-205ENST00000595028 FHAD1B1AJZ9 1412 aa26.19■■□□□ 1.78
TRIM28-205ENST00000595028 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
TRIM28-205ENST00000595028 NUP160Q12769 1436 aa26.11■■□□□ 1.77
TRIM28-205ENST00000595028 KIF27Q86VH2 1401 aa26.1■■□□□ 1.77
TRIM28-205ENST00000595028 ERCC6L2Q5T890 1561 aa26.06■■□□□ 1.76
TRIM28-205ENST00000595028 CUL7Q14999 1698 aa26.04■■□□□ 1.76
TRIM28-205ENST00000595028 SHROOM2Q13796 1616 aa25.98■■□□□ 1.75
TRIM28-205ENST00000595028 IGF1RP08069 1367 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms