RNA–Protein interactions for RNA: ENST00000593254.1

H3F3B-213, Transcript of H3 histone family member 3B, humanhuman

TSL 5

Gene H3F3B, Length 894 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3B-213ENST00000593254 NISCHQ9Y2I1 1504 aa33■■■□□ 2.87
H3F3B-213ENST00000593254 ABCC9O60706 1549 aa30.22■■■□□ 2.43
H3F3B-213ENST00000593254 CCDC180Q9P1Z9 1646 aa29.84■■■□□ 2.37
H3F3B-213ENST00000593254 DNAJC5BQ9UF47 199 aa28.82■■■□□ 2.2
H3F3B-213ENST00000593254 RB1CC1Q8TDY2 1594 aa28.59■■■□□ 2.17
H3F3B-213ENST00000593254 NACADO15069 1562 aa28.31■■■□□ 2.12
H3F3B-213ENST00000593254 AEBP2Q6ZN18 517 aaPredicted RBP28.12■■■□□ 2.09
H3F3B-213ENST00000593254 PABPN1Q86U42 306 aaKnown RBP eCLIP28.05■■■□□ 2.08
H3F3B-213ENST00000593254 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
H3F3B-213ENST00000593254 DCAF8L2P0C7V8 631 aa27.92■■■□□ 2.06
H3F3B-213ENST00000593254 BICRAQ9NZM4 1560 aa27.82■■■□□ 2.04
H3F3B-213ENST00000593254 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
H3F3B-213ENST00000593254 SHROOM4Q9ULL8 1493 aa27.4■■□□□ 1.98
H3F3B-213ENST00000593254 CC2D2AQ9P2K1 1620 aa27.32■■□□□ 1.96
H3F3B-213ENST00000593254 CECR2Q9BXF3 1484 aa27.3■■□□□ 1.96
H3F3B-213ENST00000593254 DCAF1Q9Y4B6 1507 aa27.27■■□□□ 1.96
H3F3B-213ENST00000593254 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
H3F3B-213ENST00000593254 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
H3F3B-213ENST00000593254 SCRIBQ14160 1630 aa27.1■■□□□ 1.93
H3F3B-213ENST00000593254 DNAJC5Q9H3Z4 198 aa26.8■■□□□ 1.88
H3F3B-213ENST00000593254 CHIC1Q5VXU3 224 aa26.54■■□□□ 1.84
H3F3B-213ENST00000593254 CUX2O14529 1486 aa26.29■■□□□ 1.8
H3F3B-213ENST00000593254 NCAPD3P42695 1498 aa26.15■■□□□ 1.78
H3F3B-213ENST00000593254 ERCC6Q03468 1493 aa26.11■■□□□ 1.77
H3F3B-213ENST00000593254 ATAD2BQ9ULI0 1458 aa25.99■■□□□ 1.75
H3F3B-213ENST00000593254 HMGXB3Q12766 1538 aa25.91■■□□□ 1.74
H3F3B-213ENST00000593254 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
H3F3B-213ENST00000593254 NESP48681 1621 aa25.85■■□□□ 1.73
H3F3B-213ENST00000593254 SMARCA4P51532 1647 aa25.85■■□□□ 1.73
H3F3B-213ENST00000593254 THOC2Q8NI27 1593 aaKnown RBP25.73■■□□□ 1.71
H3F3B-213ENST00000593254 BAZ1BQ9UIG0 1483 aaKnown RBP25.68■■□□□ 1.7
H3F3B-213ENST00000593254 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
H3F3B-213ENST00000593254 BAZ1AQ9NRL2 1556 aaPredicted RBP25.64■■□□□ 1.69
H3F3B-213ENST00000593254 LAMC3Q9Y6N6 1575 aa25.62■■□□□ 1.69
H3F3B-213ENST00000593254 KIF21AQ7Z4S6 1674 aa25.53■■□□□ 1.68
H3F3B-213ENST00000593254 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
H3F3B-213ENST00000593254 MROH2BQ7Z745 1585 aa25.41■■□□□ 1.66
H3F3B-213ENST00000593254 TRIM41Q8WV44 630 aa25.34■■□□□ 1.65
H3F3B-213ENST00000593254 CADPSQ9ULU8 1353 aa25.31■■□□□ 1.64
H3F3B-213ENST00000593254 MRC2Q9UBG0 1479 aa25.28■■□□□ 1.64
H3F3B-213ENST00000593254 WDR62O43379 1518 aa25.27■■□□□ 1.64
H3F3B-213ENST00000593254 WIZO95785 1651 aa25.08■■□□□ 1.61
H3F3B-213ENST00000593254 CEP164Q9UPV0 1460 aa25.07■■□□□ 1.6
H3F3B-213ENST00000593254 FANCD2Q9BXW9 1451 aa25.01■■□□□ 1.59
H3F3B-213ENST00000593254 OSCARQ8IYS5 282 aa24.97■■□□□ 1.59
H3F3B-213ENST00000593254 CFTRP13569 1480 aa24.95■■□□□ 1.58
H3F3B-213ENST00000593254 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
H3F3B-213ENST00000593254 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
H3F3B-213ENST00000593254 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
H3F3B-213ENST00000593254 RIMBP3CA6NJZ7 1639 aa24.73■■□□□ 1.55
H3F3B-213ENST00000593254 RIMBP3BA6NNM3 1639 aa24.73■■□□□ 1.55
H3F3B-213ENST00000593254 RIMBP3Q9UFD9 1639 aa24.73■■□□□ 1.55
H3F3B-213ENST00000593254 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
H3F3B-213ENST00000593254 ZNF608Q9ULD9 1512 aaPredicted RBP24.61■■□□□ 1.53
H3F3B-213ENST00000593254 IFT140Q96RY7 1462 aa24.6■■□□□ 1.53
H3F3B-213ENST00000593254 ARHGEF11O15085 1522 aa24.6■■□□□ 1.53
H3F3B-213ENST00000593254 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
H3F3B-213ENST00000593254 CCDC88BA6NC98 1476 aa24.46■■□□□ 1.51
H3F3B-213ENST00000593254 EIF4G3O43432 1585 aaKnown RBP24.46■■□□□ 1.51
H3F3B-213ENST00000593254 ABCC8Q09428 1581 aa24.4■■□□□ 1.5
H3F3B-213ENST00000593254 CYB5RLQ6IPT4 315 aa24.39■■□□□ 1.49
H3F3B-213ENST00000593254 CHD1O14646 1710 aa24.37■■□□□ 1.49
H3F3B-213ENST00000593254 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
H3F3B-213ENST00000593254 TARBP1Q13395 1621 aaKnown RBP24.34■■□□□ 1.49
H3F3B-213ENST00000593254 ARAP1Q96P48 1450 aa24.33■■□□□ 1.49
H3F3B-213ENST00000593254 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.482e-9■■■■□ 20.2
H3F3B-213ENST00000593254 TRHP20396 242 aaPredicted RBP24.23■■□□□ 1.47
H3F3B-213ENST00000593254 POLA1P09884 1462 aaPredicted RBP24.22■■□□□ 1.47
H3F3B-213ENST00000593254 FBLN2P98095 1184 aa24.18■■□□□ 1.46
H3F3B-213ENST00000593254 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
H3F3B-213ENST00000593254 CLASP1Q7Z460 1538 aa24.1■■□□□ 1.45
H3F3B-213ENST00000593254 TDRD9Q8NDG6 1382 aaKnown RBP24.08■■□□□ 1.45
H3F3B-213ENST00000593254 SOGA1O94964 1423 aa24.07■■□□□ 1.44
H3F3B-213ENST00000593254 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
H3F3B-213ENST00000593254 SNAPC4Q5SXM2 1469 aa24.05■■□□□ 1.44
H3F3B-213ENST00000593254 SYNJ1O43426 1573 aa24■■□□□ 1.43
H3F3B-213ENST00000593254 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
H3F3B-213ENST00000593254 MAGI1Q96QZ7 1491 aaPredicted RBP23.99■■□□□ 1.43
H3F3B-213ENST00000593254 FGD5Q6ZNL6 1462 aa23.98■■□□□ 1.43
H3F3B-213ENST00000593254 CHMP7Q8WUX9 453 aaPredicted RBP23.96■■□□□ 1.43
H3F3B-213ENST00000593254 GRIN2BQ13224 1484 aa23.93■■□□□ 1.42
H3F3B-213ENST00000593254 SYNJ2O15056 1496 aa23.92■■□□□ 1.42
H3F3B-213ENST00000593254 CUX1P39880 1505 aa23.9■■□□□ 1.42
H3F3B-213ENST00000593254 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
H3F3B-213ENST00000593254 SUPT5HO00267 1087 aaKnown RBP23.83■■□□□ 1.41
H3F3B-213ENST00000593254 PBRM1Q86U86 1689 aa23.82■■□□□ 1.4
H3F3B-213ENST00000593254 ABCA5Q8WWZ7 1642 aa23.73■■□□□ 1.39
H3F3B-213ENST00000593254 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
H3F3B-213ENST00000593254 ERCC6L2Q5T890 1561 aa23.67■■□□□ 1.38
H3F3B-213ENST00000593254 PHF23Q9BUL5 403 aaPredicted RBP23.66■■□□□ 1.38
H3F3B-213ENST00000593254 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
H3F3B-213ENST00000593254 NUP160Q12769 1436 aa23.59■■□□□ 1.37
H3F3B-213ENST00000593254 CEP170Q5SW79 1584 aa23.59■■□□□ 1.37
H3F3B-213ENST00000593254 ADAMTS12P58397 1594 aa23.57■■□□□ 1.36
H3F3B-213ENST00000593254 SHROOM2Q13796 1616 aa23.56■■□□□ 1.36
H3F3B-213ENST00000593254 KIF13AQ9H1H9 1805 aa23.5■■□□□ 1.35
H3F3B-213ENST00000593254 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.357e-8■□□□□ 11.3
H3F3B-213ENST00000593254 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
H3F3B-213ENST00000593254 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
H3F3B-213ENST00000593254 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms