RNA–Protein interactions for RNA: ENST00000593157.5

TRMT1-222, Transcript of tRNA methyltransferase 1, human

TSL 2

Gene TRMT1, Length 2,127 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRMT1-222	ENST00000593157	NISCH	Q9Y2I1	1504 aa		39.49	■■■■□ 3.91
TRMT1-222	ENST00000593157	SHROOM4	Q9ULL8	1493 aa		33.83	■■■■□ 3.01
TRMT1-222	ENST00000593157	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.59	■■■□□ 2.97
TRMT1-222	ENST00000593157	SUPT5H	O00267	1087 aa	Known RBP	33.55	■■■□□ 2.96
TRMT1-222	ENST00000593157	HRC	P23327	699 aa		33.44	■■■□□ 2.94
TRMT1-222	ENST00000593157	CCDC180	Q9P1Z9	1646 aa		33.4	■■■□□ 2.94
TRMT1-222	ENST00000593157	MYO15B	Q96JP2	1530 aa		33.19	■■■□□ 2.9
TRMT1-222	ENST00000593157	CHIC1	Q5VXU3	224 aa		33.16	■■■□□ 2.9
TRMT1-222	ENST00000593157	DCAF1	Q9Y4B6	1507 aa		32.76	■■■□□ 2.84
TRMT1-222	ENST00000593157	PCGF6	Q9BYE7	350 aa		32.74	■■■□□ 2.83
TRMT1-222	ENST00000593157	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.36	■■■□□ 2.77
TRMT1-222	ENST00000593157	TRIM26	Q12899	539 aa	Predicted RBP	32.15	■■■□□ 2.74
TRMT1-222	ENST00000593157	DCAF8L2	P0C7V8	631 aa		32.11	■■■□□ 2.73
TRMT1-222	ENST00000593157	LOC105371045	A0A1W2PR82	267 aa		32.03	■■■□□ 2.72
TRMT1-222	ENST00000593157	ZEB1	P37275	1124 aa	Predicted RBP	31.91	■■■□□ 2.7
TRMT1-222	ENST00000593157	ABCC9	O60706	1549 aa		31.85	■■■□□ 2.69
TRMT1-222	ENST00000593157	PELP1	Q8IZL8	1130 aa	Known RBP	31.76	■■■□□ 2.67
TRMT1-222	ENST00000593157	RSF1	Q96T23	1441 aa	Predicted RBP	31.47	■■■□□ 2.63
TRMT1-222	ENST00000593157	RB1CC1	Q8TDY2	1594 aa		31.36	■■■□□ 2.61
TRMT1-222	ENST00000593157	TRIM41	Q8WV44	630 aa		31.33	■■■□□ 2.61
TRMT1-222	ENST00000593157	SCAF1	Q9H7N4	1312 aa	Known RBP	31.17	■■■□□ 2.58
TRMT1-222	ENST00000593157	SCRIB	Q14160	1630 aa		31.15	■■■□□ 2.58
TRMT1-222	ENST00000593157	FAM9A	Q8IZU1	332 aa	Predicted RBP	30.9	■■■□□ 2.54
TRMT1-222	ENST00000593157	ACIN1	Q9UKV3	1341 aa	Known RBP	30.73	■■■□□ 2.51
TRMT1-222	ENST00000593157	MROH2B	Q7Z745	1585 aa		30.65	■■■□□ 2.5
TRMT1-222	ENST00000593157	NACAD	O15069	1562 aa		30.64	■■■□□ 2.5
TRMT1-222	ENST00000593157	CECR2	Q9BXF3	1484 aa		30.62	■■■□□ 2.49
TRMT1-222	ENST00000593157	EIF4G1	Q04637	1599 aa	Known RBP	30.6	■■■□□ 2.49
TRMT1-222	ENST00000593157	CCER1	Q8TC90	406 aa	Predicted RBP	30.56	■■■□□ 2.48
TRMT1-222	ENST00000593157	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.55	■■■□□ 2.48
TRMT1-222	ENST00000593157	WIZ	O95785	1651 aa		30.54	■■■□□ 2.48
TRMT1-222	ENST00000593157	WRN	Q14191	1432 aa	Predicted RBP eCLIP	30.52	■■■□□ 2.48
TRMT1-222	ENST00000593157	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	30.5	■■■□□ 2.47
TRMT1-222	ENST00000593157	NEUROD1	Q13562	356 aa		30.5	■■■□□ 2.47
TRMT1-222	ENST00000593157	MYT1	Q01538	1121 aa		30.49	■■■□□ 2.47
TRMT1-222	ENST00000593157	CENPB	P07199	599 aa	Predicted RBP	30.49	■■■□□ 2.47
TRMT1-222	ENST00000593157	EHMT2	Q96KQ7	1210 aa		30.45	■■■□□ 2.47
TRMT1-222	ENST00000593157	DIEXF	Q68CQ4	756 aa	Known RBP	30.42	■■■□□ 2.46
TRMT1-222	ENST00000593157	GTF3C3	Q9Y5Q9	886 aa		30.29	■■■□□ 2.44
TRMT1-222	ENST00000593157	CEP162	Q5TB80	1403 aa		30.19	■■■□□ 2.42
TRMT1-222	ENST00000593157	TNIK	Q9UKE5	1360 aa		30.18	■■■□□ 2.42
TRMT1-222	ENST00000593157	TOP2A	P11388	1531 aa	Known RBP	30.17	■■■□□ 2.42
TRMT1-222	ENST00000593157	EEA1	Q15075	1411 aa		30.14	■■■□□ 2.42
TRMT1-222	ENST00000593157	CCDC88B	A6NC98	1476 aa		30.09	■■■□□ 2.41
TRMT1-222	ENST00000593157	ZNF316	A6NFI3	1004 aa	Predicted RBP	30.07	■■■□□ 2.4
TRMT1-222	ENST00000593157	ABCC8	Q09428	1581 aa		30.05	■■■□□ 2.4
TRMT1-222	ENST00000593157	SMARCA2	P51531	1590 aa		30	■■■□□ 2.39
TRMT1-222	ENST00000593157	SMARCA4	P51532	1647 aa		29.94	■■■□□ 2.38
TRMT1-222	ENST00000593157	SOGA1	O94964	1423 aa		29.91	■■■□□ 2.38
TRMT1-222	ENST00000593157	GOLGA3	Q08378	1498 aa		29.86	■■■□□ 2.37
TRMT1-222	ENST00000593157	CSRNP3	Q8WYN3	585 aa		29.86	■■■□□ 2.37
TRMT1-222	ENST00000593157	TTBK1	Q5TCY1	1321 aa	Predicted RBP	29.72	■■■□□ 2.35
TRMT1-222	ENST00000593157	RUSC2	Q8N2Y8	1516 aa		29.7	■■■□□ 2.34
TRMT1-222	ENST00000593157	UBTF	P17480	764 aa	Known RBP	29.68	■■■□□ 2.34
TRMT1-222	ENST00000593157	KIF21B	O75037	1637 aa		29.68	■■■□□ 2.34
TRMT1-222	ENST00000593157	CEP164	Q9UPV0	1460 aa		29.63	■■■□□ 2.33
TRMT1-222	ENST00000593157	MIER1	Q8N108	512 aa		29.61	■■■□□ 2.33
TRMT1-222	ENST00000593157	YTHDC1	Q96MU7	727 aa	Known RBP	29.54	■■■□□ 2.32
TRMT1-222	ENST00000593157	UNC13A	Q9UPW8	1703 aa		29.52	■■■□□ 2.32
TRMT1-222	ENST00000593157	CLSPN	Q9HAW4	1339 aa		29.51	■■■□□ 2.32
TRMT1-222	ENST00000593157	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.51	■■■□□ 2.31
TRMT1-222	ENST00000593157	VPS8	Q8N3P4	1428 aa		29.51	■■■□□ 2.31
TRMT1-222	ENST00000593157	CLIP1	P30622	1438 aa		29.47	■■■□□ 2.31
TRMT1-222	ENST00000593157	PEG3	Q9GZU2	1588 aa		29.44	■■■□□ 2.3
TRMT1-222	ENST00000593157	HNRNPUL2	Q1KMD3	747 aa	Known RBP	29.41	■■■□□ 2.3
TRMT1-222	ENST00000593157	SYNJ1	O43426	1573 aa		29.38	■■■□□ 2.29
TRMT1-222	ENST00000593157	APLP2	Q06481	763 aa		29.28	■■■□□ 2.28
TRMT1-222	ENST00000593157	RAPGEF2	Q9Y4G8	1499 aa		29.18	■■■□□ 2.26
TRMT1-222	ENST00000593157	DHX57	Q6P158	1386 aa	Known RBP	29.16	■■■□□ 2.26
TRMT1-222	ENST00000593157	ERICH3	Q5RHP9	1530 aa		29.09	■■■□□ 2.25
TRMT1-222	ENST00000593157	BICRA	Q9NZM4	1560 aa		29.07	■■■□□ 2.24
TRMT1-222	ENST00000593157	SUPT16H	Q9Y5B9	1047 aa	Known RBP	29.06	■■■□□ 2.24
TRMT1-222	ENST00000593157	TOP2B	Q02880	1626 aa		29.05	■■■□□ 2.24
TRMT1-222	ENST00000593157	CUX2	O14529	1486 aa		29.02	■■■□□ 2.24
TRMT1-222	ENST00000593157	RRBP1	Q9P2E9	1410 aa	Known RBP	28.98	■■■□□ 2.23
TRMT1-222	ENST00000593157	BIVM-ERCC5	R4GMW8	1640 aa		28.98	■■■□□ 2.23
TRMT1-222	ENST00000593157	ARAP1	Q96P48	1450 aa		28.95	■■■□□ 2.22
TRMT1-222	ENST00000593157	ATAD2B	Q9ULI0	1458 aa		28.95	■■■□□ 2.22
TRMT1-222	ENST00000593157	PRX	Q9BXM0	1461 aa		28.94	■■■□□ 2.22
TRMT1-222	ENST00000593157	TSHZ2	Q9NRE2	1034 aa		28.79	■■■□□ 2.2
TRMT1-222	ENST00000593157	KANK4	Q5T7N3	995 aa	Predicted RBP	28.74	■■■□□ 2.19
TRMT1-222	ENST00000593157	CCNB3	Q8WWL7	1395 aa		28.72	■■■□□ 2.19
TRMT1-222	ENST00000593157	PABPN1	Q86U42	306 aa	Known RBP eCLIP	28.69	■■■□□ 2.18	6e-7	■■■□□ 15.9
TRMT1-222	ENST00000593157	ANP32E	Q9BTT0	268 aa		28.68	■■■□□ 2.18
TRMT1-222	ENST00000593157	RANGAP1	P46060	587 aa	Predicted RBP	28.66	■■■□□ 2.18
TRMT1-222	ENST00000593157	MAP3K1	Q13233	1512 aa		28.61	■■■□□ 2.17
TRMT1-222	ENST00000593157	MAPKBP1	O60336	1514 aa		28.59	■■■□□ 2.17
TRMT1-222	ENST00000593157	KIF27	Q86VH2	1401 aa		28.59	■■■□□ 2.17
TRMT1-222	ENST00000593157	ARHGAP35	Q9NRY4	1499 aa		28.57	■■■□□ 2.16
TRMT1-222	ENST00000593157	RAB3GAP2	Q9H2M9	1393 aa		28.52	■■■□□ 2.16
TRMT1-222	ENST00000593157	CUX1	P39880	1505 aa		28.51	■■■□□ 2.16
TRMT1-222	ENST00000593157	TIAM1	Q13009	1591 aa		28.46	■■■□□ 2.15
TRMT1-222	ENST00000593157	TIMELESS	Q9UNS1	1208 aa		28.45	■■■□□ 2.14
TRMT1-222	ENST00000593157	SETD5	Q9C0A6	1442 aa		28.44	■■■□□ 2.14
TRMT1-222	ENST00000593157	HMGXB3	Q12766	1538 aa		28.42	■■■□□ 2.14
TRMT1-222	ENST00000593157	KCNH8	Q96L42	1107 aa		28.39	■■■□□ 2.13
TRMT1-222	ENST00000593157	WDR97	A6NE52	1622 aa		28.36	■■■□□ 2.13
TRMT1-222	ENST00000593157	CCER2	I3L3R5	266 aa		28.34	■■■□□ 2.13
TRMT1-222	ENST00000593157	PPP1R15A	O75807	674 aa	Predicted RBP	28.31	■■■□□ 2.12
TRMT1-222	ENST00000593157	FKBP8	Q14318	412 aa		28.31	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 337.9 ms