RNA–Protein interactions for RNA: ENST00000592885.5

APOC1-209, Transcript of apolipoprotein C1, humanhuman

TSL 3 BASIC

Gene APOC1, Length 562 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-209ENST00000592885 NISCHQ9Y2I1 1504 aa33.21■■■□□ 2.91
APOC1-209ENST00000592885 CCDC180Q9P1Z9 1646 aa29.86■■■□□ 2.37
APOC1-209ENST00000592885 ABCC9O60706 1549 aa29.5■■■□□ 2.31
APOC1-209ENST00000592885 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
APOC1-209ENST00000592885 NACADO15069 1562 aa28.14■■■□□ 2.1
APOC1-209ENST00000592885 MYO15BQ96JP2 1530 aa27.86■■■□□ 2.05
APOC1-209ENST00000592885 DCAF8L2P0C7V8 631 aa27.73■■■□□ 2.03
APOC1-209ENST00000592885 UNC13AQ9UPW8 1703 aa27.63■■■□□ 2.01
APOC1-209ENST00000592885 ZCCHC6Q5VYS8 1495 aaKnown RBP27.59■■■□□ 2.01
APOC1-209ENST00000592885 DCAF1Q9Y4B6 1507 aa27.54■■■□□ 2
APOC1-209ENST00000592885 DNAJC5BQ9UF47 199 aa27.43■■□□□ 1.98
APOC1-209ENST00000592885 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
APOC1-209ENST00000592885 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.98
APOC1-209ENST00000592885 SHROOM4Q9ULL8 1493 aa27.22■■□□□ 1.95
APOC1-209ENST00000592885 SCRIBQ14160 1630 aa27.07■■□□□ 1.92
APOC1-209ENST00000592885 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
APOC1-209ENST00000592885 EIF4G1Q04637 1599 aaKnown RBP26.73■■□□□ 1.87
APOC1-209ENST00000592885 CECR2Q9BXF3 1484 aa26.61■■□□□ 1.85
APOC1-209ENST00000592885 NCAPD3P42695 1498 aa25.92■■□□□ 1.74
APOC1-209ENST00000592885 SMARCA4P51532 1647 aa25.9■■□□□ 1.74
APOC1-209ENST00000592885 SMARCA2P51531 1590 aa25.85■■□□□ 1.73
APOC1-209ENST00000592885 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
APOC1-209ENST00000592885 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
APOC1-209ENST00000592885 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
APOC1-209ENST00000592885 PEG3Q9GZU2 1588 aa25.7■■□□□ 1.71
APOC1-209ENST00000592885 BAZ1BQ9UIG0 1483 aaKnown RBP25.62■■□□□ 1.69
APOC1-209ENST00000592885 MROH2BQ7Z745 1585 aa25.54■■□□□ 1.68
APOC1-209ENST00000592885 ERCC6Q03468 1493 aa25.51■■□□□ 1.67
APOC1-209ENST00000592885 CUX2O14529 1486 aa25.5■■□□□ 1.67
APOC1-209ENST00000592885 NESP48681 1621 aa25.37■■□□□ 1.65
APOC1-209ENST00000592885 LAMC3Q9Y6N6 1575 aa25.37■■□□□ 1.65
APOC1-209ENST00000592885 WIZO95785 1651 aa25.26■■□□□ 1.63
APOC1-209ENST00000592885 THOC2Q8NI27 1593 aaKnown RBP25.22■■□□□ 1.63
APOC1-209ENST00000592885 DNAJC5Q9H3Z4 198 aa25.16■■□□□ 1.62
APOC1-209ENST00000592885 PDS5BQ9NTI5 1447 aa25.16■■□□□ 1.62
APOC1-209ENST00000592885 KIF21AQ7Z4S6 1674 aa25.15■■□□□ 1.62
APOC1-209ENST00000592885 CADPSQ9ULU8 1353 aa25.11■■□□□ 1.61
APOC1-209ENST00000592885 RSF1Q96T23 1441 aaPredicted RBP25.06■■□□□ 1.6
APOC1-209ENST00000592885 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
APOC1-209ENST00000592885 MRC2Q9UBG0 1479 aa24.95■■□□□ 1.58
APOC1-209ENST00000592885 WDR62O43379 1518 aa24.91■■□□□ 1.58
APOC1-209ENST00000592885 CFTRP13569 1480 aa24.89■■□□□ 1.57
APOC1-209ENST00000592885 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
APOC1-209ENST00000592885 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.57
APOC1-209ENST00000592885 PRDM2Q13029 1718 aa24.78■■□□□ 1.56
APOC1-209ENST00000592885 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
APOC1-209ENST00000592885 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
APOC1-209ENST00000592885 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
APOC1-209ENST00000592885 TOPBP1Q92547 1522 aa24.39■■□□□ 1.49
APOC1-209ENST00000592885 IFT140Q96RY7 1462 aa24.38■■□□□ 1.49
APOC1-209ENST00000592885 DNMBPQ6XZF7 1577 aa24.36■■□□□ 1.49
APOC1-209ENST00000592885 ZNF608Q9ULD9 1512 aaPredicted RBP24.24■■□□□ 1.47
APOC1-209ENST00000592885 OSCARQ8IYS5 282 aa24.22■■□□□ 1.47
APOC1-209ENST00000592885 EIF4G3O43432 1585 aaKnown RBP24.21■■□□□ 1.47
APOC1-209ENST00000592885 TARBP1Q13395 1621 aaKnown RBP24.19■■□□□ 1.46
APOC1-209ENST00000592885 POLA1P09884 1462 aaPredicted RBP24.14■■□□□ 1.46
APOC1-209ENST00000592885 WDR97A6NE52 1622 aa24.08■■□□□ 1.45
APOC1-209ENST00000592885 TRIM41Q8WV44 630 aa24.04■■□□□ 1.44
APOC1-209ENST00000592885 AQRO60306 1485 aaKnown RBP eCLIP24.02■■□□□ 1.448e-8■■■■■ 40.2
APOC1-209ENST00000592885 FGD5Q6ZNL6 1462 aa24■■□□□ 1.43
APOC1-209ENST00000592885 CUX1P39880 1505 aa24■■□□□ 1.43
APOC1-209ENST00000592885 SOGA1O94964 1423 aa24■■□□□ 1.43
APOC1-209ENST00000592885 CHD1O14646 1710 aa23.99■■□□□ 1.43
APOC1-209ENST00000592885 RAD54L2Q9Y4B4 1467 aa23.99■■□□□ 1.43
APOC1-209ENST00000592885 RIMBP3CA6NJZ7 1639 aa23.97■■□□□ 1.43
APOC1-209ENST00000592885 RIMBP3BA6NNM3 1639 aa23.97■■□□□ 1.43
APOC1-209ENST00000592885 RIMBP3Q9UFD9 1639 aa23.97■■□□□ 1.43
APOC1-209ENST00000592885 SUPT5HO00267 1087 aaKnown RBP23.92■■□□□ 1.42
APOC1-209ENST00000592885 ARHGEF11O15085 1522 aa23.91■■□□□ 1.42
APOC1-209ENST00000592885 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
APOC1-209ENST00000592885 SNAPC4Q5SXM2 1469 aa23.85■■□□□ 1.41
APOC1-209ENST00000592885 MAGI1Q96QZ7 1491 aaPredicted RBP23.85■■□□□ 1.41
APOC1-209ENST00000592885 GRIN2BQ13224 1484 aa23.83■■□□□ 1.41
APOC1-209ENST00000592885 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
APOC1-209ENST00000592885 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
APOC1-209ENST00000592885 FBLN2P98095 1184 aa23.77■■□□□ 1.4
APOC1-209ENST00000592885 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
APOC1-209ENST00000592885 SYNJ1O43426 1573 aa23.75■■□□□ 1.39
APOC1-209ENST00000592885 BIVM-ERCC5R4GMW8 1640 aa23.75■■□□□ 1.39
APOC1-209ENST00000592885 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
APOC1-209ENST00000592885 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
APOC1-209ENST00000592885 CLASP1Q7Z460 1538 aa23.74■■□□□ 1.39
APOC1-209ENST00000592885 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
APOC1-209ENST00000592885 WRNQ14191 1432 aaPredicted RBP eCLIP23.69■■□□□ 1.38
APOC1-209ENST00000592885 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
APOC1-209ENST00000592885 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
APOC1-209ENST00000592885 CYB5RLQ6IPT4 315 aa23.58■■□□□ 1.37
APOC1-209ENST00000592885 ADAMTS12P58397 1594 aa23.57■■□□□ 1.36
APOC1-209ENST00000592885 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
APOC1-209ENST00000592885 ERICH3Q5RHP9 1530 aa23.52■■□□□ 1.36
APOC1-209ENST00000592885 FHAD1B1AJZ9 1412 aa23.47■■□□□ 1.35
APOC1-209ENST00000592885 NUP160Q12769 1436 aa23.44■■□□□ 1.34
APOC1-209ENST00000592885 CEP170Q5SW79 1584 aa23.43■■□□□ 1.34
APOC1-209ENST00000592885 SHROOM2Q13796 1616 aa23.37■■□□□ 1.33
APOC1-209ENST00000592885 ERCC6L2Q5T890 1561 aa23.28■■□□□ 1.32
APOC1-209ENST00000592885 TRHP20396 242 aaPredicted RBP23.27■■□□□ 1.32
APOC1-209ENST00000592885 RUSC2Q8N2Y8 1516 aa23.24■■□□□ 1.31
APOC1-209ENST00000592885 CUL7Q14999 1698 aa23.24■■□□□ 1.31
APOC1-209ENST00000592885 KIF27Q86VH2 1401 aa23.22■■□□□ 1.31
APOC1-209ENST00000592885 PRG4Q92954 1404 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms