RNA–Protein interactions for RNA: ENST00000592186.5

SMAD4-214, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,306 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-214ENST00000592186 NISCHQ9Y2I1 1504 aa25.03■■□□□ 1.6
SMAD4-214ENST00000592186 CCDC180Q9P1Z9 1646 aa22.04■■□□□ 1.12
SMAD4-214ENST00000592186 AEBP2Q6ZN18 517 aaPredicted RBP21.26■□□□□ 0.99
SMAD4-214ENST00000592186 ABCC9O60706 1549 aa21.23■□□□□ 0.99
SMAD4-214ENST00000592186 ZCCHC6Q5VYS8 1495 aaKnown RBP20.89■□□□□ 0.94
SMAD4-214ENST00000592186 DCAF8L2P0C7V8 631 aa20.85■□□□□ 0.93
SMAD4-214ENST00000592186 DCAF1Q9Y4B6 1507 aa20.76■□□□□ 0.91
SMAD4-214ENST00000592186 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
SMAD4-214ENST00000592186 NACADO15069 1562 aa20.71■□□□□ 0.91
SMAD4-214ENST00000592186 RB1CC1Q8TDY2 1594 aa20.62■□□□□ 0.89
SMAD4-214ENST00000592186 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
SMAD4-214ENST00000592186 SCRIBQ14160 1630 aa20.11■□□□□ 0.81
SMAD4-214ENST00000592186 UNC13AQ9UPW8 1703 aa19.99■□□□□ 0.79
SMAD4-214ENST00000592186 SHROOM4Q9ULL8 1493 aa19.96■□□□□ 0.79
SMAD4-214ENST00000592186 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
SMAD4-214ENST00000592186 BICRAQ9NZM4 1560 aa19.91■□□□□ 0.78
SMAD4-214ENST00000592186 CECR2Q9BXF3 1484 aa19.42■□□□□ 0.7
SMAD4-214ENST00000592186 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
SMAD4-214ENST00000592186 BAZ1AQ9NRL2 1556 aaPredicted RBP19.39■□□□□ 0.69
SMAD4-214ENST00000592186 SMARCA4P51532 1647 aa19.29■□□□□ 0.68
SMAD4-214ENST00000592186 MROH2BQ7Z745 1585 aa19.26■□□□□ 0.67
SMAD4-214ENST00000592186 RSF1Q96T23 1441 aaPredicted RBP19.23■□□□□ 0.67
SMAD4-214ENST00000592186 CC2D2AQ9P2K1 1620 aa19.2■□□□□ 0.66
SMAD4-214ENST00000592186 DNAJC5BQ9UF47 199 aa19.18■□□□□ 0.66
SMAD4-214ENST00000592186 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
SMAD4-214ENST00000592186 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
SMAD4-214ENST00000592186 PEG3Q9GZU2 1588 aa19.14■□□□□ 0.65
SMAD4-214ENST00000592186 NCAPD3P42695 1498 aa19.13■□□□□ 0.65
SMAD4-214ENST00000592186 SUPT5HO00267 1087 aaKnown RBP19.05■□□□□ 0.64
SMAD4-214ENST00000592186 WIZO95785 1651 aa19.03■□□□□ 0.64
SMAD4-214ENST00000592186 BAZ1BQ9UIG0 1483 aaKnown RBP19.01■□□□□ 0.63
SMAD4-214ENST00000592186 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
SMAD4-214ENST00000592186 TOP2AP11388 1531 aaKnown RBP18.91■□□□□ 0.62
SMAD4-214ENST00000592186 CCDC88BA6NC98 1476 aa18.71■□□□□ 0.59
SMAD4-214ENST00000592186 CADPSQ9ULU8 1353 aa18.6■□□□□ 0.57
SMAD4-214ENST00000592186 CFTRP13569 1480 aa18.53■□□□□ 0.56
SMAD4-214ENST00000592186 LAMC3Q9Y6N6 1575 aa18.52■□□□□ 0.55
SMAD4-214ENST00000592186 PDS5BQ9NTI5 1447 aa18.46■□□□□ 0.55
SMAD4-214ENST00000592186 NESP48681 1621 aa18.45■□□□□ 0.54
SMAD4-214ENST00000592186 FANCD2Q9BXW9 1451 aa18.33■□□□□ 0.53
SMAD4-214ENST00000592186 ERCC6Q03468 1493 aa18.32■□□□□ 0.52
SMAD4-214ENST00000592186 PRDM2Q13029 1718 aa18.29■□□□□ 0.52
SMAD4-214ENST00000592186 CEP164Q9UPV0 1460 aa18.28■□□□□ 0.52
SMAD4-214ENST00000592186 SENP3Q9H4L4 574 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-214ENST00000592186 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
SMAD4-214ENST00000592186 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
SMAD4-214ENST00000592186 MRC2Q9UBG0 1479 aa18.17■□□□□ 0.5
SMAD4-214ENST00000592186 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
SMAD4-214ENST00000592186 URB2Q14146 1524 aaKnown RBP18.09■□□□□ 0.49
SMAD4-214ENST00000592186 DNMBPQ6XZF7 1577 aa18.07■□□□□ 0.48
SMAD4-214ENST00000592186 WDR62O43379 1518 aa18.07■□□□□ 0.48
SMAD4-214ENST00000592186 TOPBP1Q92547 1522 aa18.07■□□□□ 0.48
SMAD4-214ENST00000592186 THOC2Q8NI27 1593 aaKnown RBP18.06■□□□□ 0.48
SMAD4-214ENST00000592186 CUX1P39880 1505 aa18.05■□□□□ 0.48
SMAD4-214ENST00000592186 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
SMAD4-214ENST00000592186 TOP2BQ02880 1626 aa18■□□□□ 0.47
SMAD4-214ENST00000592186 CUX2O14529 1486 aa17.99■□□□□ 0.47
SMAD4-214ENST00000592186 SYNJ1O43426 1573 aa17.97■□□□□ 0.47
SMAD4-214ENST00000592186 PHF23Q9BUL5 403 aaPredicted RBP17.97■□□□□ 0.47
SMAD4-214ENST00000592186 BIVM-ERCC5R4GMW8 1640 aa17.96■□□□□ 0.47
SMAD4-214ENST00000592186 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
SMAD4-214ENST00000592186 SOGA1O94964 1423 aa17.93■□□□□ 0.46
SMAD4-214ENST00000592186 POLA1P09884 1462 aaPredicted RBP17.93■□□□□ 0.46
SMAD4-214ENST00000592186 IFT140Q96RY7 1462 aa17.91■□□□□ 0.46
SMAD4-214ENST00000592186 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
SMAD4-214ENST00000592186 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
SMAD4-214ENST00000592186 TARBP1Q13395 1621 aaKnown RBP17.8■□□□□ 0.44
SMAD4-214ENST00000592186 TDRD9Q8NDG6 1382 aaKnown RBP17.77■□□□□ 0.43
SMAD4-214ENST00000592186 KIF27Q86VH2 1401 aa17.76■□□□□ 0.43
SMAD4-214ENST00000592186 WDR97A6NE52 1622 aa17.75■□□□□ 0.43
SMAD4-214ENST00000592186 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
SMAD4-214ENST00000592186 AQRO60306 1485 aaKnown RBP eCLIP17.72■□□□□ 0.431e-6■■■■□ 21
SMAD4-214ENST00000592186 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
SMAD4-214ENST00000592186 EEA1Q15075 1411 aa17.69■□□□□ 0.42
SMAD4-214ENST00000592186 GRIN2BQ13224 1484 aa17.66■□□□□ 0.42
SMAD4-214ENST00000592186 ABCA5Q8WWZ7 1642 aa17.64■□□□□ 0.42
SMAD4-214ENST00000592186 IGF1RP08069 1367 aa17.64■□□□□ 0.41
SMAD4-214ENST00000592186 EIF4G3O43432 1585 aaKnown RBP17.64■□□□□ 0.41
SMAD4-214ENST00000592186 CSRNP3Q8WYN3 585 aa17.63■□□□□ 0.41
SMAD4-214ENST00000592186 ERICH3Q5RHP9 1530 aa17.62■□□□□ 0.41
SMAD4-214ENST00000592186 RUSC2Q8N2Y8 1516 aa17.61■□□□□ 0.41
SMAD4-214ENST00000592186 FAM9AQ8IZU1 332 aaPredicted RBP17.58■□□□□ 0.4
SMAD4-214ENST00000592186 MAGI1Q96QZ7 1491 aaPredicted RBP17.58■□□□□ 0.4
SMAD4-214ENST00000592186 CARMIL1Q5VZK9 1371 aa17.54■□□□□ 0.4
SMAD4-214ENST00000592186 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
SMAD4-214ENST00000592186 SNAPC4Q5SXM2 1469 aa17.53■□□□□ 0.4
SMAD4-214ENST00000592186 CHMP7Q8WUX9 453 aaPredicted RBP17.53■□□□□ 0.4
SMAD4-214ENST00000592186 PBRM1Q86U86 1689 aa17.52■□□□□ 0.4
SMAD4-214ENST00000592186 FBLN2P98095 1184 aa17.49■□□□□ 0.39
SMAD4-214ENST00000592186 SYNJ2O15056 1496 aa17.49■□□□□ 0.39
SMAD4-214ENST00000592186 CUL7Q14999 1698 aa17.49■□□□□ 0.39
SMAD4-214ENST00000592186 PRXQ9BXM0 1461 aa17.48■□□□□ 0.39
SMAD4-214ENST00000592186 RAPGEF2Q9Y4G8 1499 aa17.46■□□□□ 0.39
SMAD4-214ENST00000592186 ADAMTS12P58397 1594 aa17.45■□□□□ 0.38
SMAD4-214ENST00000592186 GRIN2AQ12879 1464 aa17.41■□□□□ 0.38
SMAD4-214ENST00000592186 OSCARQ8IYS5 282 aa17.41■□□□□ 0.38
SMAD4-214ENST00000592186 KIF21BO75037 1637 aa17.37■□□□□ 0.37
SMAD4-214ENST00000592186 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
SMAD4-214ENST00000592186 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
SMAD4-214ENST00000592186 NUP160Q12769 1436 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms