RNA–Protein interactions for RNA: ENST00000591595.5

SMARCA4-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,377 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-217ENST00000591595 NISCHQ9Y2I1 1504 aa23.35■■□□□ 1.33
SMARCA4-217ENST00000591595 PELP1Q8IZL8 1130 aaKnown RBP21.56■■□□□ 1.04
SMARCA4-217ENST00000591595 MYT1Q01538 1121 aa21.09■□□□□ 0.97
SMARCA4-217ENST00000591595 HRCP23327 699 aa20.54■□□□□ 0.88
SMARCA4-217ENST00000591595 SHROOM4Q9ULL8 1493 aa20.53■□□□□ 0.88
SMARCA4-217ENST00000591595 SUPT5HO00267 1087 aaKnown RBP20.31■□□□□ 0.84
SMARCA4-217ENST00000591595 TTBK1Q5TCY1 1321 aaPredicted RBP20.14■□□□□ 0.82
SMARCA4-217ENST00000591595 SCAF1Q9H7N4 1312 aaKnown RBP20.04■□□□□ 0.8
SMARCA4-217ENST00000591595 PPARGC1BQ86YN6 1023 aaKnown RBP20.03■□□□□ 0.8
SMARCA4-217ENST00000591595 DCAF8L2P0C7V8 631 aa19.94■□□□□ 0.78
SMARCA4-217ENST00000591595 ZCCHC6Q5VYS8 1495 aaKnown RBP19.75■□□□□ 0.75
SMARCA4-217ENST00000591595 PRKCSHP14314 528 aaPredicted RBP19.67■□□□□ 0.74
SMARCA4-217ENST00000591595 CHIC1Q5VXU3 224 aa19.63■□□□□ 0.73
SMARCA4-217ENST00000591595 PCGF6Q9BYE7 350 aa19.55■□□□□ 0.72
SMARCA4-217ENST00000591595 BCL11AQ9H165 835 aa19.53■□□□□ 0.72
SMARCA4-217ENST00000591595 CCDC180Q9P1Z9 1646 aa19.53■□□□□ 0.72
SMARCA4-217ENST00000591595 MYO15BQ96JP2 1530 aa19.48■□□□□ 0.71
SMARCA4-217ENST00000591595 FAM9AQ8IZU1 332 aaPredicted RBP19.32■□□□□ 0.68
SMARCA4-217ENST00000591595 ERICH6Q7L0X2 663 aa19.22■□□□□ 0.67
SMARCA4-217ENST00000591595 ACIN1Q9UKV3 1341 aaKnown RBP19.22■□□□□ 0.67
SMARCA4-217ENST00000591595 LOC105371045A0A1W2PR82 267 aa19.19■□□□□ 0.66
SMARCA4-217ENST00000591595 CENPBP07199 599 aaPredicted RBP19.18■□□□□ 0.66
SMARCA4-217ENST00000591595 GTF3C3Q9Y5Q9 886 aa19.12■□□□□ 0.65
SMARCA4-217ENST00000591595 NEUROD1Q13562 356 aa19.09■□□□□ 0.65
SMARCA4-217ENST00000591595 APLP2Q06481 763 aa19.09■□□□□ 0.65
SMARCA4-217ENST00000591595 DCAF1Q9Y4B6 1507 aa18.98■□□□□ 0.63
SMARCA4-217ENST00000591595 ZEB1P37275 1124 aaPredicted RBP18.94■□□□□ 0.62
SMARCA4-217ENST00000591595 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
SMARCA4-217ENST00000591595 TRIM41Q8WV44 630 aa18.82■□□□□ 0.6
SMARCA4-217ENST00000591595 EHMT2Q96KQ7 1210 aa18.79■□□□□ 0.6
SMARCA4-217ENST00000591595 ANP32EQ9BTT0 268 aa18.77■□□□□ 0.6
SMARCA4-217ENST00000591595 RSF1Q96T23 1441 aaPredicted RBP18.66■□□□□ 0.58
SMARCA4-217ENST00000591595 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
SMARCA4-217ENST00000591595 ABCC9O60706 1549 aa18.65■□□□□ 0.58
SMARCA4-217ENST00000591595 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
SMARCA4-217ENST00000591595 RB1CC1Q8TDY2 1594 aa18.46■□□□□ 0.55
SMARCA4-217ENST00000591595 SLC24A1O60721 1099 aa18.39■□□□□ 0.54
SMARCA4-217ENST00000591595 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
SMARCA4-217ENST00000591595 DIEXFQ68CQ4 756 aaKnown RBP18.28■□□□□ 0.52
SMARCA4-217ENST00000591595 CCER1Q8TC90 406 aaPredicted RBP18.22■□□□□ 0.51
SMARCA4-217ENST00000591595 MROH2BQ7Z745 1585 aa18.22■□□□□ 0.51
SMARCA4-217ENST00000591595 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.22■□□□□ 0.51
SMARCA4-217ENST00000591595 ANO8Q9HCE9 1232 aaPredicted RBP18.18■□□□□ 0.5
SMARCA4-217ENST00000591595 TSHZ2Q9NRE2 1034 aa18.15■□□□□ 0.5
SMARCA4-217ENST00000591595 NACADO15069 1562 aa18.14■□□□□ 0.5
SMARCA4-217ENST00000591595 YTHDC1Q96MU7 727 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-217ENST00000591595 WIZO95785 1651 aa18.1■□□□□ 0.49
SMARCA4-217ENST00000591595 EIF5BO60841 1220 aaKnown RBP18.04■□□□□ 0.48
SMARCA4-217ENST00000591595 UBE2Q2Q8WVN8 375 aa18.01■□□□□ 0.47
SMARCA4-217ENST00000591595 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
SMARCA4-217ENST00000591595 BAZ1AQ9NRL2 1556 aaPredicted RBP17.93■□□□□ 0.46
SMARCA4-217ENST00000591595 SUPT16HQ9Y5B9 1047 aaKnown RBP17.92■□□□□ 0.46
SMARCA4-217ENST00000591595 ABCC8Q09428 1581 aa17.89■□□□□ 0.46
SMARCA4-217ENST00000591595 DAXXQ9UER7 740 aaPredicted RBP17.89■□□□□ 0.45
SMARCA4-217ENST00000591595 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
SMARCA4-217ENST00000591595 CLSPNQ9HAW4 1339 aa17.88■□□□□ 0.45
SMARCA4-217ENST00000591595 CEP162Q5TB80 1403 aa17.85■□□□□ 0.45
SMARCA4-217ENST00000591595 SALL2Q9Y467 1007 aaPredicted RBP17.83■□□□□ 0.45
SMARCA4-217ENST00000591595 SOGA1O94964 1423 aa17.83■□□□□ 0.44
SMARCA4-217ENST00000591595 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.44
SMARCA4-217ENST00000591595 CCDC136Q96JN2 1154 aa17.77■□□□□ 0.44
SMARCA4-217ENST00000591595 TNIKQ9UKE5 1360 aa17.75■□□□□ 0.43
SMARCA4-217ENST00000591595 EIF4G1Q04637 1599 aaKnown RBP17.75■□□□□ 0.43
SMARCA4-217ENST00000591595 PABPN1Q86U42 306 aaKnown RBP eCLIP17.74■□□□□ 0.43
SMARCA4-217ENST00000591595 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
SMARCA4-217ENST00000591595 HNRNPUL2Q1KMD3 747 aaKnown RBP17.73■□□□□ 0.43
SMARCA4-217ENST00000591595 RANGAP1P46060 587 aaPredicted RBP17.71■□□□□ 0.43
SMARCA4-217ENST00000591595 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
SMARCA4-217ENST00000591595 RUSC2Q8N2Y8 1516 aa17.69■□□□□ 0.42
SMARCA4-217ENST00000591595 SMARCA2P51531 1590 aa17.69■□□□□ 0.42
SMARCA4-217ENST00000591595 PLEKHG5O94827 1062 aa17.68■□□□□ 0.42
SMARCA4-217ENST00000591595 MIER1Q8N108 512 aa17.68■□□□□ 0.42
SMARCA4-217ENST00000591595 ZNF316A6NFI3 1004 aaPredicted RBP17.67■□□□□ 0.42
SMARCA4-217ENST00000591595 EEA1Q15075 1411 aa17.66■□□□□ 0.42
SMARCA4-217ENST00000591595 ERICH6BQ5W0A0 696 aa17.65■□□□□ 0.42
SMARCA4-217ENST00000591595 MYT1LQ9UL68 1186 aa17.65■□□□□ 0.42
SMARCA4-217ENST00000591595 GOLGA3Q08378 1498 aa17.62■□□□□ 0.41
SMARCA4-217ENST00000591595 DEKP35659 375 aaKnown RBP17.62■□□□□ 0.41
SMARCA4-217ENST00000591595 PKNOX2Q96KN3 472 aa17.62■□□□□ 0.41
SMARCA4-217ENST00000591595 RBM19Q9Y4C8 960 aaKnown RBP17.62■□□□□ 0.41
SMARCA4-217ENST00000591595 MSH5O43196 834 aa17.56■□□□□ 0.4
SMARCA4-217ENST00000591595 CLIP1P30622 1438 aa17.51■□□□□ 0.39
SMARCA4-217ENST00000591595 PODXL2Q9NZ53 605 aa17.5■□□□□ 0.39
SMARCA4-217ENST00000591595 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
SMARCA4-217ENST00000591595 CEP164Q9UPV0 1460 aa17.48■□□□□ 0.39
SMARCA4-217ENST00000591595 UNC13AQ9UPW8 1703 aa17.4■□□□□ 0.38
SMARCA4-217ENST00000591595 BCANQ96GW7 911 aa17.39■□□□□ 0.37
SMARCA4-217ENST00000591595 VPS8Q8N3P4 1428 aa17.38■□□□□ 0.37
SMARCA4-217ENST00000591595 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
SMARCA4-217ENST00000591595 RAPGEF2Q9Y4G8 1499 aa17.35■□□□□ 0.37
SMARCA4-217ENST00000591595 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
SMARCA4-217ENST00000591595 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
SMARCA4-217ENST00000591595 KIF21BO75037 1637 aa17.29■□□□□ 0.36
SMARCA4-217ENST00000591595 ATAD2BQ9ULI0 1458 aa17.28■□□□□ 0.36
SMARCA4-217ENST00000591595 RTN4Q9NQC3 1192 aaKnown RBP17.28■□□□□ 0.36
SMARCA4-217ENST00000591595 BICRAQ9NZM4 1560 aa17.27■□□□□ 0.36
SMARCA4-217ENST00000591595 IL27Q8NEV9 243 aa17.27■□□□□ 0.36
SMARCA4-217ENST00000591595 ITGAEP38570 1179 aa17.25■□□□□ 0.35
SMARCA4-217ENST00000591595 PEG3Q9GZU2 1588 aa17.21■□□□□ 0.35
SMARCA4-217ENST00000591595 FKBP8Q14318 412 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms