RNA–Protein interactions for RNA: ENST00000591115.5

PTPN2-210, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 1,648 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-210ENST00000591115 NISCHQ9Y2I1 1504 aa22.72■■□□□ 1.23
PTPN2-210ENST00000591115 AEBP2Q6ZN18 517 aaPredicted RBP21.25■□□□□ 0.99
PTPN2-210ENST00000591115 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
PTPN2-210ENST00000591115 CHIC1Q5VXU3 224 aa19.91■□□□□ 0.78
PTPN2-210ENST00000591115 ABCC9O60706 1549 aa19.26■□□□□ 0.67
PTPN2-210ENST00000591115 ZCCHC6Q5VYS8 1495 aaKnown RBP19.03■□□□□ 0.64
PTPN2-210ENST00000591115 DCAF1Q9Y4B6 1507 aa18.78■□□□□ 0.6
PTPN2-210ENST00000591115 DCAF8L2P0C7V8 631 aa18.76■□□□□ 0.59
PTPN2-210ENST00000591115 NACADO15069 1562 aa18.71■□□□□ 0.59
PTPN2-210ENST00000591115 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
PTPN2-210ENST00000591115 RB1CC1Q8TDY2 1594 aa18.67■□□□□ 0.58
PTPN2-210ENST00000591115 SCRIBQ14160 1630 aa18.4■□□□□ 0.54
PTPN2-210ENST00000591115 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.53
PTPN2-210ENST00000591115 SENP3Q9H4L4 574 aaPredicted RBP18.29■□□□□ 0.52
PTPN2-210ENST00000591115 SHROOM4Q9ULL8 1493 aa18.24■□□□□ 0.51
PTPN2-210ENST00000591115 BICRAQ9NZM4 1560 aa18.14■□□□□ 0.49
PTPN2-210ENST00000591115 PABPN1Q86U42 306 aaKnown RBP eCLIP18.01■□□□□ 0.47
PTPN2-210ENST00000591115 PHF23Q9BUL5 403 aaPredicted RBP17.93■□□□□ 0.46
PTPN2-210ENST00000591115 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
PTPN2-210ENST00000591115 EIF4G1Q04637 1599 aaKnown RBP17.61■□□□□ 0.41
PTPN2-210ENST00000591115 SMARCA4P51532 1647 aa17.6■□□□□ 0.41
PTPN2-210ENST00000591115 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.41
PTPN2-210ENST00000591115 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
PTPN2-210ENST00000591115 SUPT5HO00267 1087 aaKnown RBP17.47■□□□□ 0.39
PTPN2-210ENST00000591115 CC2D2AQ9P2K1 1620 aa17.45■□□□□ 0.38
PTPN2-210ENST00000591115 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
PTPN2-210ENST00000591115 WIZO95785 1651 aa17.43■□□□□ 0.38
PTPN2-210ENST00000591115 PEG3Q9GZU2 1588 aa17.38■□□□□ 0.37
PTPN2-210ENST00000591115 SMARCA2P51531 1590 aa17.34■□□□□ 0.37
PTPN2-210ENST00000591115 ATAD2BQ9ULI0 1458 aa17.34■□□□□ 0.37
PTPN2-210ENST00000591115 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
PTPN2-210ENST00000591115 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
PTPN2-210ENST00000591115 BAZ1BQ9UIG0 1483 aaKnown RBP17.24■□□□□ 0.35
PTPN2-210ENST00000591115 NCAPD3P42695 1498 aa17.23■□□□□ 0.35
PTPN2-210ENST00000591115 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
PTPN2-210ENST00000591115 FOXD1Q16676 465 aa17.08■□□□□ 0.32
PTPN2-210ENST00000591115 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
PTPN2-210ENST00000591115 POTEDQ86YR6 584 aa16.91■□□□□ 0.3
PTPN2-210ENST00000591115 NESP48681 1621 aa16.81■□□□□ 0.28
PTPN2-210ENST00000591115 PRDM2Q13029 1718 aa16.81■□□□□ 0.28
PTPN2-210ENST00000591115 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.27
PTPN2-210ENST00000591115 CFTRP13569 1480 aa16.76■□□□□ 0.27
PTPN2-210ENST00000591115 CADPSQ9ULU8 1353 aa16.74■□□□□ 0.27
PTPN2-210ENST00000591115 KIF21AQ7Z4S6 1674 aa16.68■□□□□ 0.26
PTPN2-210ENST00000591115 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
PTPN2-210ENST00000591115 PDS5BQ9NTI5 1447 aa16.57■□□□□ 0.24
PTPN2-210ENST00000591115 ABCC8Q09428 1581 aa16.57■□□□□ 0.24
PTPN2-210ENST00000591115 CEP164Q9UPV0 1460 aa16.56■□□□□ 0.24
PTPN2-210ENST00000591115 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
PTPN2-210ENST00000591115 THOC2Q8NI27 1593 aaKnown RBP16.49■□□□□ 0.23
PTPN2-210ENST00000591115 SYNJ1O43426 1573 aa16.47■□□□□ 0.23
PTPN2-210ENST00000591115 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
PTPN2-210ENST00000591115 CUX1P39880 1505 aa16.45■□□□□ 0.22
PTPN2-210ENST00000591115 URB2Q14146 1524 aaKnown RBP16.45■□□□□ 0.22
PTPN2-210ENST00000591115 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
PTPN2-210ENST00000591115 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
PTPN2-210ENST00000591115 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
PTPN2-210ENST00000591115 BIVM-ERCC5R4GMW8 1640 aa16.42■□□□□ 0.22
PTPN2-210ENST00000591115 WDR62O43379 1518 aa16.41■□□□□ 0.22
PTPN2-210ENST00000591115 TOP2BQ02880 1626 aa16.41■□□□□ 0.22
PTPN2-210ENST00000591115 TOPBP1Q92547 1522 aa16.4■□□□□ 0.22
PTPN2-210ENST00000591115 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
PTPN2-210ENST00000591115 POLA1P09884 1462 aaPredicted RBP16.29■□□□□ 0.2
PTPN2-210ENST00000591115 MSH5O43196 834 aa16.29■□□□□ 0.2
PTPN2-210ENST00000591115 CUX2O14529 1486 aa16.24■□□□□ 0.19
PTPN2-210ENST00000591115 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
PTPN2-210ENST00000591115 TARBP1Q13395 1621 aaKnown RBP16.23■□□□□ 0.19
PTPN2-210ENST00000591115 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
PTPN2-210ENST00000591115 LOC105371045A0A1W2PR82 267 aa16.18■□□□□ 0.18
PTPN2-210ENST00000591115 SOGA1O94964 1423 aa16.17■□□□□ 0.18
PTPN2-210ENST00000591115 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
PTPN2-210ENST00000591115 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.17
PTPN2-210ENST00000591115 ZNF608Q9ULD9 1512 aaPredicted RBP16.12■□□□□ 0.17
PTPN2-210ENST00000591115 EIF4G3O43432 1585 aaKnown RBP16.12■□□□□ 0.17
PTPN2-210ENST00000591115 ABCA5Q8WWZ7 1642 aa16.12■□□□□ 0.17
PTPN2-210ENST00000591115 EEA1Q15075 1411 aa16.11■□□□□ 0.17
PTPN2-210ENST00000591115 FAM9AQ8IZU1 332 aaPredicted RBP16.09■□□□□ 0.17
PTPN2-210ENST00000591115 RUSC2Q8N2Y8 1516 aa16.08■□□□□ 0.17
PTPN2-210ENST00000591115 PBRM1Q86U86 1689 aa16.08■□□□□ 0.17
PTPN2-210ENST00000591115 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
PTPN2-210ENST00000591115 AQRO60306 1485 aaKnown RBP eCLIP16.04■□□□□ 0.164e-6■■■■■ 31
PTPN2-210ENST00000591115 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
PTPN2-210ENST00000591115 GAPVD1Q14C86 1478 aa16.02■□□□□ 0.16
PTPN2-210ENST00000591115 ERICH3Q5RHP9 1530 aa15.96■□□□□ 0.15
PTPN2-210ENST00000591115 GRIN2BQ13224 1484 aa15.95■□□□□ 0.14
PTPN2-210ENST00000591115 CSRNP3Q8WYN3 585 aa15.95■□□□□ 0.14
PTPN2-210ENST00000591115 CUL7Q14999 1698 aa15.94■□□□□ 0.14
PTPN2-210ENST00000591115 ADAMTS12P58397 1594 aa15.94■□□□□ 0.14
PTPN2-210ENST00000591115 SNAPC4Q5SXM2 1469 aa15.93■□□□□ 0.14
PTPN2-210ENST00000591115 IGF1RP08069 1367 aa15.9■□□□□ 0.14
PTPN2-210ENST00000591115 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
PTPN2-210ENST00000591115 CHD1O14646 1710 aa15.87■□□□□ 0.13
PTPN2-210ENST00000591115 KIF21BO75037 1637 aa15.87■□□□□ 0.13
PTPN2-210ENST00000591115 TNIKQ9UKE5 1360 aa15.85■□□□□ 0.13
PTPN2-210ENST00000591115 GOLGA3Q08378 1498 aa15.85■□□□□ 0.13
PTPN2-210ENST00000591115 PRXQ9BXM0 1461 aa15.85■□□□□ 0.13
PTPN2-210ENST00000591115 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
PTPN2-210ENST00000591115 SYNJ2O15056 1496 aa15.82■□□□□ 0.12
PTPN2-210ENST00000591115 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
PTPN2-210ENST00000591115 RAPGEF2Q9Y4G8 1499 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms