RNA–Protein interactions for RNA: ENST00000590887.5

PTBP1-216, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 3

Gene PTBP1, Length 642 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-216ENST00000590887 NISCHQ9Y2I1 1504 aa29.5■■■□□ 2.31
PTBP1-216ENST00000590887 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
PTBP1-216ENST00000590887 ABCC9O60706 1549 aa24.91■■□□□ 1.58
PTBP1-216ENST00000590887 ZCCHC6Q5VYS8 1495 aaKnown RBP24.72■■□□□ 1.55
PTBP1-216ENST00000590887 DCAF1Q9Y4B6 1507 aa24.5■■□□□ 1.51
PTBP1-216ENST00000590887 DCAF8L2P0C7V8 631 aa24.43■■□□□ 1.5
PTBP1-216ENST00000590887 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
PTBP1-216ENST00000590887 NACADO15069 1562 aa24.18■■□□□ 1.46
PTBP1-216ENST00000590887 RB1CC1Q8TDY2 1594 aa24■■□□□ 1.43
PTBP1-216ENST00000590887 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
PTBP1-216ENST00000590887 SCRIBQ14160 1630 aa23.63■■□□□ 1.37
PTBP1-216ENST00000590887 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
PTBP1-216ENST00000590887 BICRAQ9NZM4 1560 aa23.29■■□□□ 1.32
PTBP1-216ENST00000590887 PABPN1Q86U42 306 aaKnown RBP eCLIP23.22■■□□□ 1.31
PTBP1-216ENST00000590887 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
PTBP1-216ENST00000590887 SUPT5HO00267 1087 aaKnown RBP22.93■■□□□ 1.26
PTBP1-216ENST00000590887 BAZ1AQ9NRL2 1556 aaPredicted RBP22.87■■□□□ 1.25
PTBP1-216ENST00000590887 CECR2Q9BXF3 1484 aa22.8■■□□□ 1.24
PTBP1-216ENST00000590887 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
PTBP1-216ENST00000590887 SMARCA4P51532 1647 aa22.7■■□□□ 1.22
PTBP1-216ENST00000590887 MROH2BQ7Z745 1585 aa22.69■■□□□ 1.22
PTBP1-216ENST00000590887 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
PTBP1-216ENST00000590887 CC2D2AQ9P2K1 1620 aa22.57■■□□□ 1.2
PTBP1-216ENST00000590887 WIZO95785 1651 aa22.52■■□□□ 1.2
PTBP1-216ENST00000590887 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
PTBP1-216ENST00000590887 SMARCA2P51531 1590 aa22.46■■□□□ 1.19
PTBP1-216ENST00000590887 TOP2AP11388 1531 aaKnown RBP22.37■■□□□ 1.17
PTBP1-216ENST00000590887 ATAD2BQ9ULI0 1458 aa22.37■■□□□ 1.17
PTBP1-216ENST00000590887 BAZ1BQ9UIG0 1483 aaKnown RBP22.28■■□□□ 1.16
PTBP1-216ENST00000590887 NCAPD3P42695 1498 aa22.26■■□□□ 1.15
PTBP1-216ENST00000590887 HMGXB3Q12766 1538 aa22.22■■□□□ 1.15
PTBP1-216ENST00000590887 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
PTBP1-216ENST00000590887 CHIC1Q5VXU3 224 aa21.87■■□□□ 1.09
PTBP1-216ENST00000590887 TRIM41Q8WV44 630 aa21.7■■□□□ 1.06
PTBP1-216ENST00000590887 CFTRP13569 1480 aa21.69■■□□□ 1.06
PTBP1-216ENST00000590887 CADPSQ9ULU8 1353 aa21.68■■□□□ 1.06
PTBP1-216ENST00000590887 PRDM2Q13029 1718 aa21.65■■□□□ 1.06
PTBP1-216ENST00000590887 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
PTBP1-216ENST00000590887 NESP48681 1621 aa21.55■■□□□ 1.04
PTBP1-216ENST00000590887 WRNQ14191 1432 aaPredicted RBP eCLIP21.52■■□□□ 1.043e-6■■■■□ 22.3
PTBP1-216ENST00000590887 ABCC8Q09428 1581 aa21.49■■□□□ 1.03
PTBP1-216ENST00000590887 PDS5BQ9NTI5 1447 aa21.45■■□□□ 1.02
PTBP1-216ENST00000590887 ERCC6Q03468 1493 aa21.42■■□□□ 1.02
PTBP1-216ENST00000590887 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
PTBP1-216ENST00000590887 TOP2BQ02880 1626 aa21.35■■□□□ 1.01
PTBP1-216ENST00000590887 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
PTBP1-216ENST00000590887 CUX2O14529 1486 aa21.32■■□□□ 1
PTBP1-216ENST00000590887 CEP164Q9UPV0 1460 aa21.32■■□□□ 1
PTBP1-216ENST00000590887 SYNJ1O43426 1573 aa21.31■■□□□ 1
PTBP1-216ENST00000590887 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
PTBP1-216ENST00000590887 THOC2Q8NI27 1593 aaKnown RBP21.3■■□□□ 1
PTBP1-216ENST00000590887 EEA1Q15075 1411 aa21.28■■□□□ 1
PTBP1-216ENST00000590887 CUX1P39880 1505 aa21.24■□□□□ 0.99
PTBP1-216ENST00000590887 DNMBPQ6XZF7 1577 aa21.22■□□□□ 0.99
PTBP1-216ENST00000590887 FAM9AQ8IZU1 332 aaPredicted RBP21.14■□□□□ 0.97
PTBP1-216ENST00000590887 TOPBP1Q92547 1522 aa21.14■□□□□ 0.97
PTBP1-216ENST00000590887 MRC2Q9UBG0 1479 aa21.1■□□□□ 0.97
PTBP1-216ENST00000590887 WDR62O43379 1518 aa21.09■□□□□ 0.97
PTBP1-216ENST00000590887 FGD5Q6ZNL6 1462 aa21.08■□□□□ 0.97
PTBP1-216ENST00000590887 CSRNP3Q8WYN3 585 aa21.08■□□□□ 0.97
PTBP1-216ENST00000590887 SOGA1O94964 1423 aa21.07■□□□□ 0.96
PTBP1-216ENST00000590887 URB2Q14146 1524 aaKnown RBP21.06■□□□□ 0.96
PTBP1-216ENST00000590887 KIF27Q86VH2 1401 aa21.05■□□□□ 0.96
PTBP1-216ENST00000590887 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
PTBP1-216ENST00000590887 POLA1P09884 1462 aaPredicted RBP21■□□□□ 0.95
PTBP1-216ENST00000590887 ABCA10Q8WWZ4 1543 aa20.95■□□□□ 0.94
PTBP1-216ENST00000590887 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
PTBP1-216ENST00000590887 RUSC2Q8N2Y8 1516 aa20.94■□□□□ 0.94
PTBP1-216ENST00000590887 KIF21BO75037 1637 aa20.89■□□□□ 0.93
PTBP1-216ENST00000590887 GOLGA3Q08378 1498 aa20.88■□□□□ 0.93
PTBP1-216ENST00000590887 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
PTBP1-216ENST00000590887 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
PTBP1-216ENST00000590887 WDR97A6NE52 1622 aa20.83■□□□□ 0.93
PTBP1-216ENST00000590887 UBTFP17480 764 aaKnown RBP20.81■□□□□ 0.92
PTBP1-216ENST00000590887 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
PTBP1-216ENST00000590887 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
PTBP1-216ENST00000590887 IGF1RP08069 1367 aa20.78■□□□□ 0.92
PTBP1-216ENST00000590887 TNIKQ9UKE5 1360 aa20.78■□□□□ 0.92
PTBP1-216ENST00000590887 PRXQ9BXM0 1461 aa20.77■□□□□ 0.92
PTBP1-216ENST00000590887 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
PTBP1-216ENST00000590887 EHMT2Q96KQ7 1210 aa20.75■□□□□ 0.91
PTBP1-216ENST00000590887 ABCA5Q8WWZ7 1642 aa20.75■□□□□ 0.91
PTBP1-216ENST00000590887 CUL7Q14999 1698 aa20.74■□□□□ 0.91
PTBP1-216ENST00000590887 CARMIL1Q5VZK9 1371 aa20.73■□□□□ 0.91
PTBP1-216ENST00000590887 TDRD9Q8NDG6 1382 aaKnown RBP20.72■□□□□ 0.91
PTBP1-216ENST00000590887 RAPGEF2Q9Y4G8 1499 aa20.71■□□□□ 0.91
PTBP1-216ENST00000590887 GRIN2BQ13224 1484 aa20.65■□□□□ 0.9
PTBP1-216ENST00000590887 PBRM1Q86U86 1689 aa20.64■□□□□ 0.89
PTBP1-216ENST00000590887 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
PTBP1-216ENST00000590887 AQRO60306 1485 aaKnown RBP eCLIP20.61■□□□□ 0.897e-8■■■■■ 33.4
PTBP1-216ENST00000590887 CEP162Q5TB80 1403 aa20.58■□□□□ 0.88
PTBP1-216ENST00000590887 FHAD1B1AJZ9 1412 aa20.57■□□□□ 0.88
PTBP1-216ENST00000590887 EIF4G3O43432 1585 aaKnown RBP20.56■□□□□ 0.88
PTBP1-216ENST00000590887 MAGI1Q96QZ7 1491 aaPredicted RBP20.51■□□□□ 0.87
PTBP1-216ENST00000590887 CLIP1P30622 1438 aa20.5■□□□□ 0.87
PTBP1-216ENST00000590887 ADAMTS12P58397 1594 aa20.5■□□□□ 0.87
PTBP1-216ENST00000590887 SNAPC4Q5SXM2 1469 aa20.45■□□□□ 0.86
PTBP1-216ENST00000590887 OSCARQ8IYS5 282 aa20.45■□□□□ 0.86
PTBP1-216ENST00000590887 CTTNBP2Q8WZ74 1663 aa20.45■□□□□ 0.86
PTBP1-216ENST00000590887 CHMP7Q8WUX9 453 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms