RNA–Protein interactions for RNA: ENST00000590239.5

DDX39A-211, Transcript of DExD-box helicase 39A, humanhuman

TSL 4

Gene DDX39A, Length 565 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-211ENST00000590239 NISCHQ9Y2I1 1504 aa35.54■■■■□ 3.28
DDX39A-211ENST00000590239 CCDC180Q9P1Z9 1646 aa31.29■■■□□ 2.6
DDX39A-211ENST00000590239 ABCC9O60706 1549 aa29.94■■■□□ 2.38
DDX39A-211ENST00000590239 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
DDX39A-211ENST00000590239 DCAF1Q9Y4B6 1507 aa29.47■■■□□ 2.31
DDX39A-211ENST00000590239 DCAF8L2P0C7V8 631 aa29.38■■■□□ 2.29
DDX39A-211ENST00000590239 MYO15BQ96JP2 1530 aa29.35■■■□□ 2.29
DDX39A-211ENST00000590239 NACADO15069 1562 aa29.28■■■□□ 2.28
DDX39A-211ENST00000590239 RB1CC1Q8TDY2 1594 aa29.13■■■□□ 2.25
DDX39A-211ENST00000590239 SCRIBQ14160 1630 aa28.58■■■□□ 2.17
DDX39A-211ENST00000590239 SHROOM4Q9ULL8 1493 aa28.44■■■□□ 2.14
DDX39A-211ENST00000590239 UNC13AQ9UPW8 1703 aa28.42■■■□□ 2.14
DDX39A-211ENST00000590239 DNAJC5BQ9UF47 199 aa28.25■■■□□ 2.11
DDX39A-211ENST00000590239 BICRAQ9NZM4 1560 aa28.21■■■□□ 2.11
DDX39A-211ENST00000590239 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
DDX39A-211ENST00000590239 CECR2Q9BXF3 1484 aa27.58■■■□□ 2.01
DDX39A-211ENST00000590239 BAZ1AQ9NRL2 1556 aaPredicted RBP27.5■■□□□ 1.99
DDX39A-211ENST00000590239 SMARCA4P51532 1647 aa27.41■■□□□ 1.98
DDX39A-211ENST00000590239 EIF4G1Q04637 1599 aaKnown RBP27.4■■□□□ 1.98
DDX39A-211ENST00000590239 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.97
DDX39A-211ENST00000590239 RSF1Q96T23 1441 aaPredicted RBP27.34■■□□□ 1.97
DDX39A-211ENST00000590239 PEG3Q9GZU2 1588 aa27.17■■□□□ 1.94
DDX39A-211ENST00000590239 SUPT5HO00267 1087 aaKnown RBP27.13■■□□□ 1.93
DDX39A-211ENST00000590239 SMARCA2P51531 1590 aa27.12■■□□□ 1.93
DDX39A-211ENST00000590239 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
DDX39A-211ENST00000590239 ATAD2BQ9ULI0 1458 aa27.11■■□□□ 1.93
DDX39A-211ENST00000590239 WIZO95785 1651 aa27.1■■□□□ 1.93
DDX39A-211ENST00000590239 NCAPD3P42695 1498 aa27.01■■□□□ 1.91
DDX39A-211ENST00000590239 HMGXB3Q12766 1538 aa26.93■■□□□ 1.9
DDX39A-211ENST00000590239 BAZ1BQ9UIG0 1483 aaKnown RBP26.92■■□□□ 1.9
DDX39A-211ENST00000590239 TOP2AP11388 1531 aaKnown RBP26.89■■□□□ 1.89
DDX39A-211ENST00000590239 DNAJC5Q9H3Z4 198 aa26.8■■□□□ 1.88
DDX39A-211ENST00000590239 CCDC88BA6NC98 1476 aa26.57■■□□□ 1.84
DDX39A-211ENST00000590239 CADPSQ9ULU8 1353 aa26.25■■□□□ 1.79
DDX39A-211ENST00000590239 CFTRP13569 1480 aa26.24■■□□□ 1.79
DDX39A-211ENST00000590239 LAMC3Q9Y6N6 1575 aa26.17■■□□□ 1.78
DDX39A-211ENST00000590239 NESP48681 1621 aa26.1■■□□□ 1.77
DDX39A-211ENST00000590239 PRDM2Q13029 1718 aa26.05■■□□□ 1.76
DDX39A-211ENST00000590239 PDS5BQ9NTI5 1447 aa25.99■■□□□ 1.75
DDX39A-211ENST00000590239 FANCD2Q9BXW9 1451 aa25.94■■□□□ 1.74
DDX39A-211ENST00000590239 CEP164Q9UPV0 1460 aa25.84■■□□□ 1.73
DDX39A-211ENST00000590239 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
DDX39A-211ENST00000590239 ABCC8Q09428 1581 aa25.78■■□□□ 1.72
DDX39A-211ENST00000590239 WRNQ14191 1432 aaPredicted RBP eCLIP25.76■■□□□ 1.713e-13■■■■■ 62.7
DDX39A-211ENST00000590239 ERCC6Q03468 1493 aa25.76■■□□□ 1.71
DDX39A-211ENST00000590239 CHIC1Q5VXU3 224 aa25.75■■□□□ 1.71
DDX39A-211ENST00000590239 MRC2Q9UBG0 1479 aa25.66■■□□□ 1.7
DDX39A-211ENST00000590239 CUX1P39880 1505 aa25.66■■□□□ 1.7
DDX39A-211ENST00000590239 URB2Q14146 1524 aaKnown RBP25.63■■□□□ 1.69
DDX39A-211ENST00000590239 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
DDX39A-211ENST00000590239 DNMBPQ6XZF7 1577 aa25.63■■□□□ 1.69
DDX39A-211ENST00000590239 TRIM41Q8WV44 630 aa25.62■■□□□ 1.69
DDX39A-211ENST00000590239 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
DDX39A-211ENST00000590239 CUX2O14529 1486 aa25.6■■□□□ 1.69
DDX39A-211ENST00000590239 BIVM-ERCC5R4GMW8 1640 aa25.6■■□□□ 1.69
DDX39A-211ENST00000590239 TOPBP1Q92547 1522 aa25.6■■□□□ 1.69
DDX39A-211ENST00000590239 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
DDX39A-211ENST00000590239 WDR62O43379 1518 aa25.55■■□□□ 1.68
DDX39A-211ENST00000590239 FGD5Q6ZNL6 1462 aa25.46■■□□□ 1.67
DDX39A-211ENST00000590239 POLA1P09884 1462 aaPredicted RBP25.42■■□□□ 1.66
DDX39A-211ENST00000590239 SOGA1O94964 1423 aa25.35■■□□□ 1.65
DDX39A-211ENST00000590239 RAD54L2Q9Y4B4 1467 aa25.29■■□□□ 1.64
DDX39A-211ENST00000590239 IFT140Q96RY7 1462 aa25.28■■□□□ 1.64
DDX39A-211ENST00000590239 ABCA10Q8WWZ4 1543 aa25.27■■□□□ 1.64
DDX39A-211ENST00000590239 TARBP1Q13395 1621 aaKnown RBP25.26■■□□□ 1.63
DDX39A-211ENST00000590239 WDR97A6NE52 1622 aa25.2■■□□□ 1.62
DDX39A-211ENST00000590239 EEA1Q15075 1411 aa25.18■■□□□ 1.62
DDX39A-211ENST00000590239 KIF27Q86VH2 1401 aa25.18■■□□□ 1.62
DDX39A-211ENST00000590239 RUSC2Q8N2Y8 1516 aa25.12■■□□□ 1.61
DDX39A-211ENST00000590239 TDRD9Q8NDG6 1382 aaKnown RBP25.11■■□□□ 1.61
DDX39A-211ENST00000590239 ABCA5Q8WWZ7 1642 aa25.08■■□□□ 1.61
DDX39A-211ENST00000590239 ZNF608Q9ULD9 1512 aaPredicted RBP25.07■■□□□ 1.6
DDX39A-211ENST00000590239 GAPVD1Q14C86 1478 aa25.06■■□□□ 1.6
DDX39A-211ENST00000590239 AQRO60306 1485 aaKnown RBP eCLIP25.03■■□□□ 1.64e-7■■■■■ 56.8
DDX39A-211ENST00000590239 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
DDX39A-211ENST00000590239 CSRNP3Q8WYN3 585 aa25.02■■□□□ 1.6
DDX39A-211ENST00000590239 EIF4G3O43432 1585 aaKnown RBP25.01■■□□□ 1.59
DDX39A-211ENST00000590239 IGF1RP08069 1367 aa24.99■■□□□ 1.59
DDX39A-211ENST00000590239 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
DDX39A-211ENST00000590239 GRIN2BQ13224 1484 aa24.97■■□□□ 1.59
DDX39A-211ENST00000590239 PBRM1Q86U86 1689 aa24.92■■□□□ 1.58
DDX39A-211ENST00000590239 PRXQ9BXM0 1461 aa24.87■■□□□ 1.57
DDX39A-211ENST00000590239 CUL7Q14999 1698 aa24.87■■□□□ 1.57
DDX39A-211ENST00000590239 CARMIL1Q5VZK9 1371 aa24.85■■□□□ 1.57
DDX39A-211ENST00000590239 MAGI1Q96QZ7 1491 aaPredicted RBP24.84■■□□□ 1.57
DDX39A-211ENST00000590239 KIF21BO75037 1637 aa24.83■■□□□ 1.56
DDX39A-211ENST00000590239 SNAPC4Q5SXM2 1469 aa24.82■■□□□ 1.56
DDX39A-211ENST00000590239 FHAD1B1AJZ9 1412 aa24.81■■□□□ 1.56
DDX39A-211ENST00000590239 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
DDX39A-211ENST00000590239 RAPGEF2Q9Y4G8 1499 aa24.77■■□□□ 1.56
DDX39A-211ENST00000590239 GOLGA3Q08378 1498 aa24.74■■□□□ 1.55
DDX39A-211ENST00000590239 SYNJ2O15056 1496 aa24.73■■□□□ 1.55
DDX39A-211ENST00000590239 LOC105371045A0A1W2PR82 267 aa24.67■■□□□ 1.54
DDX39A-211ENST00000590239 CHMP7Q8WUX9 453 aaPredicted RBP24.66■■□□□ 1.54
DDX39A-211ENST00000590239 GRIN2AQ12879 1464 aa24.64■■□□□ 1.54
DDX39A-211ENST00000590239 EHMT2Q96KQ7 1210 aa24.62■■□□□ 1.53
DDX39A-211ENST00000590239 UBTFP17480 764 aaKnown RBP24.6■■□□□ 1.53
DDX39A-211ENST00000590239 FBLN2P98095 1184 aa24.59■■□□□ 1.53
DDX39A-211ENST00000590239 TNIKQ9UKE5 1360 aa24.57■■□□□ 1.52
DDX39A-211ENST00000590239 CHD1O14646 1710 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms