RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
RETREG3-209ENST00000590035 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
RETREG3-209ENST00000590035 ABCC9O60706 1549 aa23.6■■□□□ 1.37
RETREG3-209ENST00000590035 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
RETREG3-209ENST00000590035 RB1CC1Q8TDY2 1594 aa22.53■■□□□ 1.2
RETREG3-209ENST00000590035 NACADO15069 1562 aa22.42■■□□□ 1.18
RETREG3-209ENST00000590035 MYO15BQ96JP2 1530 aa22.21■■□□□ 1.15
RETREG3-209ENST00000590035 DNAJC5BQ9UF47 199 aa22.19■■□□□ 1.14
RETREG3-209ENST00000590035 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
RETREG3-209ENST00000590035 UNC13AQ9UPW8 1703 aa22.06■■□□□ 1.12
RETREG3-209ENST00000590035 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
RETREG3-209ENST00000590035 BICRAQ9NZM4 1560 aa21.96■■□□□ 1.11
RETREG3-209ENST00000590035 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
RETREG3-209ENST00000590035 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.1
RETREG3-209ENST00000590035 DCAF1Q9Y4B6 1507 aa21.91■■□□□ 1.1
RETREG3-209ENST00000590035 SHROOM4Q9ULL8 1493 aa21.69■■□□□ 1.06
RETREG3-209ENST00000590035 SCRIBQ14160 1630 aa21.53■■□□□ 1.04
RETREG3-209ENST00000590035 CC2D2AQ9P2K1 1620 aa21.38■■□□□ 1.01
RETREG3-209ENST00000590035 EIF4G1Q04637 1599 aaKnown RBP21.36■■□□□ 1.01
RETREG3-209ENST00000590035 CECR2Q9BXF3 1484 aa21.29■■□□□ 1
RETREG3-209ENST00000590035 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
RETREG3-209ENST00000590035 ATAD2BQ9ULI0 1458 aa20.63■□□□□ 0.89
RETREG3-209ENST00000590035 SMARCA4P51532 1647 aa20.61■□□□□ 0.89
RETREG3-209ENST00000590035 HMGXB3Q12766 1538 aa20.58■□□□□ 0.88
RETREG3-209ENST00000590035 SMARCA2P51531 1590 aa20.55■□□□□ 0.88
RETREG3-209ENST00000590035 PEG3Q9GZU2 1588 aa20.5■□□□□ 0.87
RETREG3-209ENST00000590035 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
RETREG3-209ENST00000590035 CUX2O14529 1486 aa20.41■□□□□ 0.86
RETREG3-209ENST00000590035 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
RETREG3-209ENST00000590035 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
RETREG3-209ENST00000590035 DNAJC5Q9H3Z4 198 aa20.34■□□□□ 0.85
RETREG3-209ENST00000590035 ERCC6Q03468 1493 aa20.32■□□□□ 0.84
RETREG3-209ENST00000590035 NESP48681 1621 aa20.32■□□□□ 0.84
RETREG3-209ENST00000590035 LAMC3Q9Y6N6 1575 aa20.21■□□□□ 0.83
RETREG3-209ENST00000590035 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
RETREG3-209ENST00000590035 WIZO95785 1651 aa20.08■□□□□ 0.81
RETREG3-209ENST00000590035 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
RETREG3-209ENST00000590035 PDS5BQ9NTI5 1447 aa20.04■□□□□ 0.8
RETREG3-209ENST00000590035 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
RETREG3-209ENST00000590035 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
RETREG3-209ENST00000590035 MRC2Q9UBG0 1479 aa19.9■□□□□ 0.78
RETREG3-209ENST00000590035 WDR62O43379 1518 aa19.9■□□□□ 0.78
RETREG3-209ENST00000590035 TOP2AP11388 1531 aaKnown RBP19.86■□□□□ 0.77
RETREG3-209ENST00000590035 CFTRP13569 1480 aa19.86■□□□□ 0.77
RETREG3-209ENST00000590035 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
RETREG3-209ENST00000590035 FANCD2Q9BXW9 1451 aa19.79■□□□□ 0.76
RETREG3-209ENST00000590035 URB2Q14146 1524 aaKnown RBP19.67■□□□□ 0.74
RETREG3-209ENST00000590035 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
RETREG3-209ENST00000590035 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
RETREG3-209ENST00000590035 PHF23Q9BUL5 403 aaPredicted RBP19.46■□□□□ 0.71
RETREG3-209ENST00000590035 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
RETREG3-209ENST00000590035 IFT140Q96RY7 1462 aa19.43■□□□□ 0.7
RETREG3-209ENST00000590035 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
RETREG3-209ENST00000590035 ABCC8Q09428 1581 aa19.38■□□□□ 0.69
RETREG3-209ENST00000590035 DNMBPQ6XZF7 1577 aa19.38■□□□□ 0.69
RETREG3-209ENST00000590035 OSCARQ8IYS5 282 aa19.37■□□□□ 0.69
RETREG3-209ENST00000590035 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
RETREG3-209ENST00000590035 TARBP1Q13395 1621 aaKnown RBP19.32■□□□□ 0.68
RETREG3-209ENST00000590035 EIF4G3O43432 1585 aaKnown RBP19.3■□□□□ 0.68
RETREG3-209ENST00000590035 TRIM41Q8WV44 630 aa19.28■□□□□ 0.68
RETREG3-209ENST00000590035 POLA1P09884 1462 aaPredicted RBP19.26■□□□□ 0.67
RETREG3-209ENST00000590035 RIMBP3CA6NJZ7 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 RIMBP3BA6NNM3 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 RIMBP3Q9UFD9 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.66
RETREG3-209ENST00000590035 ARHGEF11O15085 1522 aa19.15■□□□□ 0.66
RETREG3-209ENST00000590035 RAD54L2Q9Y4B4 1467 aa19.14■□□□□ 0.65
RETREG3-209ENST00000590035 CUX1P39880 1505 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 WDR97A6NE52 1622 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 CHD1O14646 1710 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
RETREG3-209ENST00000590035 SOGA1O94964 1423 aa19.1■□□□□ 0.65
RETREG3-209ENST00000590035 TDRD9Q8NDG6 1382 aaKnown RBP19.06■□□□□ 0.64
RETREG3-209ENST00000590035 SNAPC4Q5SXM2 1469 aa19■□□□□ 0.63
RETREG3-209ENST00000590035 MAGI1Q96QZ7 1491 aaPredicted RBP18.99■□□□□ 0.63
RETREG3-209ENST00000590035 CLASP1Q7Z460 1538 aa18.99■□□□□ 0.63
RETREG3-209ENST00000590035 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
RETREG3-209ENST00000590035 GRIN2BQ13224 1484 aa18.97■□□□□ 0.63
RETREG3-209ENST00000590035 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
RETREG3-209ENST00000590035 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
RETREG3-209ENST00000590035 SYNJ2O15056 1496 aa18.91■□□□□ 0.62
RETREG3-209ENST00000590035 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
RETREG3-209ENST00000590035 FBLN2P98095 1184 aa18.9■□□□□ 0.62
RETREG3-209ENST00000590035 GAPVD1Q14C86 1478 aa18.89■□□□□ 0.61
RETREG3-209ENST00000590035 SYNJ1O43426 1573 aa18.89■□□□□ 0.61
RETREG3-209ENST00000590035 CYB5RLQ6IPT4 315 aa18.88■□□□□ 0.61
RETREG3-209ENST00000590035 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
RETREG3-209ENST00000590035 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
RETREG3-209ENST00000590035 TOP2BQ02880 1626 aa18.83■□□□□ 0.61
RETREG3-209ENST00000590035 CHMP7Q8WUX9 453 aaPredicted RBP18.83■□□□□ 0.6
RETREG3-209ENST00000590035 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.6
RETREG3-209ENST00000590035 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
RETREG3-209ENST00000590035 GRIN2AQ12879 1464 aa18.74■□□□□ 0.59
RETREG3-209ENST00000590035 NUP160Q12769 1436 aa18.73■□□□□ 0.59
RETREG3-209ENST00000590035 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
RETREG3-209ENST00000590035 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
RETREG3-209ENST00000590035 FHAD1B1AJZ9 1412 aa18.67■□□□□ 0.58
RETREG3-209ENST00000590035 SHROOM2Q13796 1616 aa18.66■□□□□ 0.58
RETREG3-209ENST00000590035 ERCC6L2Q5T890 1561 aa18.65■□□□□ 0.58
RETREG3-209ENST00000590035 TRHP20396 242 aaPredicted RBP18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms