RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
RETREG3-209ENST00000590035 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
RETREG3-209ENST00000590035 ABCC9O60706 1549 aa23.6■■□□□ 1.37
RETREG3-209ENST00000590035 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
RETREG3-209ENST00000590035 RB1CC1Q8TDY2 1594 aa22.53■■□□□ 1.2
RETREG3-209ENST00000590035 NACADO15069 1562 aa22.42■■□□□ 1.18
RETREG3-209ENST00000590035 MYO15BQ96JP2 1530 aa22.21■■□□□ 1.15
RETREG3-209ENST00000590035 DNAJC5BQ9UF47 199 aa22.19■■□□□ 1.14
RETREG3-209ENST00000590035 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
RETREG3-209ENST00000590035 UNC13AQ9UPW8 1703 aa22.06■■□□□ 1.12
RETREG3-209ENST00000590035 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
RETREG3-209ENST00000590035 BICRAQ9NZM4 1560 aa21.96■■□□□ 1.11
RETREG3-209ENST00000590035 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
RETREG3-209ENST00000590035 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.1
RETREG3-209ENST00000590035 DCAF1Q9Y4B6 1507 aa21.91■■□□□ 1.1
RETREG3-209ENST00000590035 SHROOM4Q9ULL8 1493 aa21.69■■□□□ 1.06
RETREG3-209ENST00000590035 SCRIBQ14160 1630 aa21.53■■□□□ 1.04
RETREG3-209ENST00000590035 CC2D2AQ9P2K1 1620 aa21.38■■□□□ 1.01
RETREG3-209ENST00000590035 EIF4G1Q04637 1599 aaKnown RBP21.36■■□□□ 1.01
RETREG3-209ENST00000590035 CECR2Q9BXF3 1484 aa21.29■■□□□ 1
RETREG3-209ENST00000590035 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
RETREG3-209ENST00000590035 ATAD2BQ9ULI0 1458 aa20.63■□□□□ 0.89
RETREG3-209ENST00000590035 SMARCA4P51532 1647 aa20.61■□□□□ 0.89
RETREG3-209ENST00000590035 HMGXB3Q12766 1538 aa20.58■□□□□ 0.88
RETREG3-209ENST00000590035 SMARCA2P51531 1590 aa20.55■□□□□ 0.88
RETREG3-209ENST00000590035 PEG3Q9GZU2 1588 aa20.5■□□□□ 0.87
RETREG3-209ENST00000590035 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
RETREG3-209ENST00000590035 CUX2O14529 1486 aa20.41■□□□□ 0.86
RETREG3-209ENST00000590035 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
RETREG3-209ENST00000590035 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
RETREG3-209ENST00000590035 DNAJC5Q9H3Z4 198 aa20.34■□□□□ 0.85
RETREG3-209ENST00000590035 ERCC6Q03468 1493 aa20.32■□□□□ 0.84
RETREG3-209ENST00000590035 NESP48681 1621 aa20.32■□□□□ 0.84
RETREG3-209ENST00000590035 LAMC3Q9Y6N6 1575 aa20.21■□□□□ 0.83
RETREG3-209ENST00000590035 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
RETREG3-209ENST00000590035 WIZO95785 1651 aa20.08■□□□□ 0.81
RETREG3-209ENST00000590035 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
RETREG3-209ENST00000590035 PDS5BQ9NTI5 1447 aa20.04■□□□□ 0.8
RETREG3-209ENST00000590035 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
RETREG3-209ENST00000590035 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
RETREG3-209ENST00000590035 MRC2Q9UBG0 1479 aa19.9■□□□□ 0.78
RETREG3-209ENST00000590035 WDR62O43379 1518 aa19.9■□□□□ 0.78
RETREG3-209ENST00000590035 TOP2AP11388 1531 aaKnown RBP19.86■□□□□ 0.77
RETREG3-209ENST00000590035 CFTRP13569 1480 aa19.86■□□□□ 0.77
RETREG3-209ENST00000590035 CEP164Q9UPV0 1460 aa19.79■□□□□ 0.76
RETREG3-209ENST00000590035 FANCD2Q9BXW9 1451 aa19.79■□□□□ 0.76
RETREG3-209ENST00000590035 URB2Q14146 1524 aaKnown RBP19.67■□□□□ 0.74
RETREG3-209ENST00000590035 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
RETREG3-209ENST00000590035 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
RETREG3-209ENST00000590035 PHF23Q9BUL5 403 aaPredicted RBP19.46■□□□□ 0.71
RETREG3-209ENST00000590035 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
RETREG3-209ENST00000590035 IFT140Q96RY7 1462 aa19.43■□□□□ 0.7
RETREG3-209ENST00000590035 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
RETREG3-209ENST00000590035 ABCC8Q09428 1581 aa19.38■□□□□ 0.69
RETREG3-209ENST00000590035 DNMBPQ6XZF7 1577 aa19.38■□□□□ 0.69
RETREG3-209ENST00000590035 OSCARQ8IYS5 282 aa19.37■□□□□ 0.69
RETREG3-209ENST00000590035 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
RETREG3-209ENST00000590035 TARBP1Q13395 1621 aaKnown RBP19.32■□□□□ 0.68
RETREG3-209ENST00000590035 EIF4G3O43432 1585 aaKnown RBP19.3■□□□□ 0.68
RETREG3-209ENST00000590035 TRIM41Q8WV44 630 aa19.28■□□□□ 0.68
RETREG3-209ENST00000590035 POLA1P09884 1462 aaPredicted RBP19.26■□□□□ 0.67
RETREG3-209ENST00000590035 RIMBP3CA6NJZ7 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 RIMBP3BA6NNM3 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 RIMBP3Q9UFD9 1639 aa19.2■□□□□ 0.66
RETREG3-209ENST00000590035 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.66
RETREG3-209ENST00000590035 ARHGEF11O15085 1522 aa19.15■□□□□ 0.66
RETREG3-209ENST00000590035 RAD54L2Q9Y4B4 1467 aa19.14■□□□□ 0.65
RETREG3-209ENST00000590035 CUX1P39880 1505 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 WDR97A6NE52 1622 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 CHD1O14646 1710 aa19.13■□□□□ 0.65
RETREG3-209ENST00000590035 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
RETREG3-209ENST00000590035 SOGA1O94964 1423 aa19.1■□□□□ 0.65
RETREG3-209ENST00000590035 TDRD9Q8NDG6 1382 aaKnown RBP19.06■□□□□ 0.64
RETREG3-209ENST00000590035 SNAPC4Q5SXM2 1469 aa19■□□□□ 0.63
RETREG3-209ENST00000590035 MAGI1Q96QZ7 1491 aaPredicted RBP18.99■□□□□ 0.63
RETREG3-209ENST00000590035 CLASP1Q7Z460 1538 aa18.99■□□□□ 0.63
RETREG3-209ENST00000590035 ARAP1Q96P48 1450 aa18.98■□□□□ 0.63
RETREG3-209ENST00000590035 GRIN2BQ13224 1484 aa18.97■□□□□ 0.63
RETREG3-209ENST00000590035 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
RETREG3-209ENST00000590035 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
RETREG3-209ENST00000590035 SYNJ2O15056 1496 aa18.91■□□□□ 0.62
RETREG3-209ENST00000590035 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
RETREG3-209ENST00000590035 FBLN2P98095 1184 aa18.9■□□□□ 0.62
RETREG3-209ENST00000590035 GAPVD1Q14C86 1478 aa18.89■□□□□ 0.61
RETREG3-209ENST00000590035 SYNJ1O43426 1573 aa18.89■□□□□ 0.61
RETREG3-209ENST00000590035 CYB5RLQ6IPT4 315 aa18.88■□□□□ 0.61
RETREG3-209ENST00000590035 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
RETREG3-209ENST00000590035 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
RETREG3-209ENST00000590035 TOP2BQ02880 1626 aa18.83■□□□□ 0.61
RETREG3-209ENST00000590035 CHMP7Q8WUX9 453 aaPredicted RBP18.83■□□□□ 0.6
RETREG3-209ENST00000590035 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.6
RETREG3-209ENST00000590035 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
RETREG3-209ENST00000590035 GRIN2AQ12879 1464 aa18.74■□□□□ 0.59
RETREG3-209ENST00000590035 NUP160Q12769 1436 aa18.73■□□□□ 0.59
RETREG3-209ENST00000590035 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
RETREG3-209ENST00000590035 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
RETREG3-209ENST00000590035 FHAD1B1AJZ9 1412 aa18.67■□□□□ 0.58
RETREG3-209ENST00000590035 SHROOM2Q13796 1616 aa18.66■□□□□ 0.58
RETREG3-209ENST00000590035 ERCC6L2Q5T890 1561 aa18.65■□□□□ 0.58
RETREG3-209ENST00000590035 TRHP20396 242 aaPredicted RBP18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms