RNA–Protein interactions for RNA: ENST00000588745.5

SMAD4-205, Transcript of SMAD family member 4, humanhuman

TSL 5 BASIC

Gene SMAD4, Length 1,371 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-205ENST00000588745 NISCHQ9Y2I1 1504 aa26.18■■□□□ 1.78
SMAD4-205ENST00000588745 CCDC180Q9P1Z9 1646 aa22.95■■□□□ 1.26
SMAD4-205ENST00000588745 ZCCHC6Q5VYS8 1495 aaKnown RBP22.01■■□□□ 1.11
SMAD4-205ENST00000588745 DCAF1Q9Y4B6 1507 aa21.69■■□□□ 1.06
SMAD4-205ENST00000588745 ABCC9O60706 1549 aa21.66■■□□□ 1.06
SMAD4-205ENST00000588745 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
SMAD4-205ENST00000588745 MYO15BQ96JP2 1530 aa21.47■■□□□ 1.03
SMAD4-205ENST00000588745 NACADO15069 1562 aa21.34■■□□□ 1.01
SMAD4-205ENST00000588745 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
SMAD4-205ENST00000588745 RB1CC1Q8TDY2 1594 aa21.18■□□□□ 0.98
SMAD4-205ENST00000588745 SCRIBQ14160 1630 aa21.03■□□□□ 0.96
SMAD4-205ENST00000588745 UNC13AQ9UPW8 1703 aa20.77■□□□□ 0.91
SMAD4-205ENST00000588745 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
SMAD4-205ENST00000588745 PABPN1Q86U42 306 aaKnown RBP eCLIP20.34■□□□□ 0.85
SMAD4-205ENST00000588745 SUPT5HO00267 1087 aaKnown RBP20.33■□□□□ 0.84
SMAD4-205ENST00000588745 CECR2Q9BXF3 1484 aa20.31■□□□□ 0.84
SMAD4-205ENST00000588745 BAZ1AQ9NRL2 1556 aaPredicted RBP20.25■□□□□ 0.83
SMAD4-205ENST00000588745 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
SMAD4-205ENST00000588745 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
SMAD4-205ENST00000588745 SMARCA4P51532 1647 aa20.17■□□□□ 0.82
SMAD4-205ENST00000588745 WIZO95785 1651 aa20.05■□□□□ 0.8
SMAD4-205ENST00000588745 PEG3Q9GZU2 1588 aa19.94■□□□□ 0.78
SMAD4-205ENST00000588745 EIF4G1Q04637 1599 aaKnown RBP19.92■□□□□ 0.78
SMAD4-205ENST00000588745 TOP2AP11388 1531 aaKnown RBP19.88■□□□□ 0.77
SMAD4-205ENST00000588745 SMARCA2P51531 1590 aa19.84■□□□□ 0.77
SMAD4-205ENST00000588745 ATAD2BQ9ULI0 1458 aa19.82■□□□□ 0.76
SMAD4-205ENST00000588745 BAZ1BQ9UIG0 1483 aaKnown RBP19.72■□□□□ 0.75
SMAD4-205ENST00000588745 HMGXB3Q12766 1538 aa19.69■□□□□ 0.74
SMAD4-205ENST00000588745 NCAPD3P42695 1498 aa19.66■□□□□ 0.74
SMAD4-205ENST00000588745 CC2D2AQ9P2K1 1620 aa19.64■□□□□ 0.73
SMAD4-205ENST00000588745 CCDC88BA6NC98 1476 aa19.61■□□□□ 0.73
SMAD4-205ENST00000588745 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
SMAD4-205ENST00000588745 CFTRP13569 1480 aa19.2■□□□□ 0.66
SMAD4-205ENST00000588745 PRDM2Q13029 1718 aa19.2■□□□□ 0.66
SMAD4-205ENST00000588745 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
SMAD4-205ENST00000588745 TRIM41Q8WV44 630 aa19.14■□□□□ 0.65
SMAD4-205ENST00000588745 CADPSQ9ULU8 1353 aa19.13■□□□□ 0.65
SMAD4-205ENST00000588745 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
SMAD4-205ENST00000588745 WRNQ14191 1432 aaPredicted RBP eCLIP19.07■□□□□ 0.64
SMAD4-205ENST00000588745 LAMC3Q9Y6N6 1575 aa19.04■□□□□ 0.64
SMAD4-205ENST00000588745 SYNJ1O43426 1573 aa19.03■□□□□ 0.64
SMAD4-205ENST00000588745 NESP48681 1621 aa18.99■□□□□ 0.63
SMAD4-205ENST00000588745 BIVM-ERCC5R4GMW8 1640 aa18.97■□□□□ 0.63
SMAD4-205ENST00000588745 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
SMAD4-205ENST00000588745 FANCD2Q9BXW9 1451 aa18.94■□□□□ 0.62
SMAD4-205ENST00000588745 CUX1P39880 1505 aa18.91■□□□□ 0.62
SMAD4-205ENST00000588745 PDS5BQ9NTI5 1447 aa18.85■□□□□ 0.61
SMAD4-205ENST00000588745 CEP164Q9UPV0 1460 aa18.84■□□□□ 0.61
SMAD4-205ENST00000588745 KIF21AQ7Z4S6 1674 aa18.82■□□□□ 0.6
SMAD4-205ENST00000588745 DNMBPQ6XZF7 1577 aa18.8■□□□□ 0.6
SMAD4-205ENST00000588745 SOGA1O94964 1423 aa18.78■□□□□ 0.6
SMAD4-205ENST00000588745 EEA1Q15075 1411 aa18.78■□□□□ 0.6
SMAD4-205ENST00000588745 FAM9AQ8IZU1 332 aaPredicted RBP18.75■□□□□ 0.59
SMAD4-205ENST00000588745 TOPBP1Q92547 1522 aa18.74■□□□□ 0.59
SMAD4-205ENST00000588745 URB2Q14146 1524 aaKnown RBP18.72■□□□□ 0.59
SMAD4-205ENST00000588745 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
SMAD4-205ENST00000588745 RUSC2Q8N2Y8 1516 aa18.71■□□□□ 0.59
SMAD4-205ENST00000588745 MRC2Q9UBG0 1479 aa18.65■□□□□ 0.58
SMAD4-205ENST00000588745 POLA1P09884 1462 aaPredicted RBP18.64■□□□□ 0.58
SMAD4-205ENST00000588745 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.57
SMAD4-205ENST00000588745 ERCC6Q03468 1493 aa18.6■□□□□ 0.57
SMAD4-205ENST00000588745 KIF27Q86VH2 1401 aa18.59■□□□□ 0.57
SMAD4-205ENST00000588745 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
SMAD4-205ENST00000588745 WDR62O43379 1518 aa18.58■□□□□ 0.57
SMAD4-205ENST00000588745 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
SMAD4-205ENST00000588745 WDR97A6NE52 1622 aa18.57■□□□□ 0.56
SMAD4-205ENST00000588745 KIF21BO75037 1637 aa18.57■□□□□ 0.56
SMAD4-205ENST00000588745 CUX2O14529 1486 aa18.56■□□□□ 0.56
SMAD4-205ENST00000588745 THOC2Q8NI27 1593 aaKnown RBP18.56■□□□□ 0.56
SMAD4-205ENST00000588745 RAD54L2Q9Y4B4 1467 aa18.55■□□□□ 0.56
SMAD4-205ENST00000588745 GOLGA3Q08378 1498 aa18.52■□□□□ 0.55
SMAD4-205ENST00000588745 TARBP1Q13395 1621 aaKnown RBP18.49■□□□□ 0.55
SMAD4-205ENST00000588745 EHMT2Q96KQ7 1210 aa18.46■□□□□ 0.55
SMAD4-205ENST00000588745 PRXQ9BXM0 1461 aa18.46■□□□□ 0.55
SMAD4-205ENST00000588745 ERICH3Q5RHP9 1530 aa18.46■□□□□ 0.55
SMAD4-205ENST00000588745 ABCA5Q8WWZ7 1642 aa18.46■□□□□ 0.55
SMAD4-205ENST00000588745 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
SMAD4-205ENST00000588745 IFT140Q96RY7 1462 aa18.41■□□□□ 0.54
SMAD4-205ENST00000588745 IGF1RP08069 1367 aa18.4■□□□□ 0.54
SMAD4-205ENST00000588745 TNIKQ9UKE5 1360 aa18.4■□□□□ 0.54
SMAD4-205ENST00000588745 CUL7Q14999 1698 aa18.37■□□□□ 0.53
SMAD4-205ENST00000588745 GAPVD1Q14C86 1478 aa18.36■□□□□ 0.53
SMAD4-205ENST00000588745 TDRD9Q8NDG6 1382 aaKnown RBP18.35■□□□□ 0.53
SMAD4-205ENST00000588745 PBRM1Q86U86 1689 aa18.33■□□□□ 0.52
SMAD4-205ENST00000588745 UBTFP17480 764 aaKnown RBP18.32■□□□□ 0.52
SMAD4-205ENST00000588745 CARMIL1Q5VZK9 1371 aa18.31■□□□□ 0.52
SMAD4-205ENST00000588745 CEP162Q5TB80 1403 aa18.31■□□□□ 0.52
SMAD4-205ENST00000588745 EIF4G3O43432 1585 aaKnown RBP18.28■□□□□ 0.52
SMAD4-205ENST00000588745 ZNF608Q9ULD9 1512 aaPredicted RBP18.27■□□□□ 0.52
SMAD4-205ENST00000588745 AQRO60306 1485 aaKnown RBP eCLIP18.25■□□□□ 0.511e-6■■■■□ 21
SMAD4-205ENST00000588745 GRIN2BQ13224 1484 aa18.24■□□□□ 0.51
SMAD4-205ENST00000588745 ADAMTS12P58397 1594 aa18.23■□□□□ 0.51
SMAD4-205ENST00000588745 CLIP1P30622 1438 aa18.19■□□□□ 0.5
SMAD4-205ENST00000588745 FHAD1B1AJZ9 1412 aa18.17■□□□□ 0.5
SMAD4-205ENST00000588745 CTTNBP2Q8WZ74 1663 aa18.16■□□□□ 0.5
SMAD4-205ENST00000588745 SNAPC4Q5SXM2 1469 aa18.14■□□□□ 0.49
SMAD4-205ENST00000588745 MAGI1Q96QZ7 1491 aaPredicted RBP18.11■□□□□ 0.49
SMAD4-205ENST00000588745 ARAP1Q96P48 1450 aa18.04■□□□□ 0.48
SMAD4-205ENST00000588745 ARHGAP35Q9NRY4 1499 aa18.04■□□□□ 0.48
SMAD4-205ENST00000588745 SYNJ2O15056 1496 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms