RNA–Protein interactions for RNA: ENST00000588642.1

NLE1-205, Transcript of notchless homolog 1, humanhuman

TSL 2

Gene NLE1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLE1-205ENST00000588642 NISCHQ9Y2I1 1504 aa32.53■■■□□ 2.8
NLE1-205ENST00000588642 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
NLE1-205ENST00000588642 ABCC9O60706 1549 aa27.42■■□□□ 1.98
NLE1-205ENST00000588642 ZCCHC6Q5VYS8 1495 aaKnown RBP27.21■■□□□ 1.95
NLE1-205ENST00000588642 DCAF8L2P0C7V8 631 aa27.17■■□□□ 1.94
NLE1-205ENST00000588642 DCAF1Q9Y4B6 1507 aa26.88■■□□□ 1.89
NLE1-205ENST00000588642 MYO15BQ96JP2 1530 aa26.72■■□□□ 1.87
NLE1-205ENST00000588642 NACADO15069 1562 aa26.71■■□□□ 1.87
NLE1-205ENST00000588642 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
NLE1-205ENST00000588642 SHROOM4Q9ULL8 1493 aa26.3■■□□□ 1.8
NLE1-205ENST00000588642 SCRIBQ14160 1630 aa26.17■■□□□ 1.78
NLE1-205ENST00000588642 PABPN1Q86U42 306 aaKnown RBP eCLIP25.85■■□□□ 1.73
NLE1-205ENST00000588642 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.72
NLE1-205ENST00000588642 BICRAQ9NZM4 1560 aa25.72■■□□□ 1.71
NLE1-205ENST00000588642 CECR2Q9BXF3 1484 aa25.32■■□□□ 1.64
NLE1-205ENST00000588642 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
NLE1-205ENST00000588642 BAZ1AQ9NRL2 1556 aaPredicted RBP25.14■■□□□ 1.62
NLE1-205ENST00000588642 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
NLE1-205ENST00000588642 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
NLE1-205ENST00000588642 SMARCA4P51532 1647 aa25.04■■□□□ 1.6
NLE1-205ENST00000588642 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
NLE1-205ENST00000588642 WIZO95785 1651 aa24.82■■□□□ 1.56
NLE1-205ENST00000588642 ATAD2BQ9ULI0 1458 aa24.81■■□□□ 1.56
NLE1-205ENST00000588642 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
NLE1-205ENST00000588642 PEG3Q9GZU2 1588 aa24.75■■□□□ 1.55
NLE1-205ENST00000588642 CC2D2AQ9P2K1 1620 aa24.74■■□□□ 1.55
NLE1-205ENST00000588642 NCAPD3P42695 1498 aa24.68■■□□□ 1.54
NLE1-205ENST00000588642 BAZ1BQ9UIG0 1483 aaKnown RBP24.65■■□□□ 1.54
NLE1-205ENST00000588642 TOP2AP11388 1531 aaKnown RBP24.61■■□□□ 1.53
NLE1-205ENST00000588642 DNAJC5BQ9UF47 199 aa24.6■■□□□ 1.53
NLE1-205ENST00000588642 HMGXB3Q12766 1538 aa24.55■■□□□ 1.52
NLE1-205ENST00000588642 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
NLE1-205ENST00000588642 CADPSQ9ULU8 1353 aa24.05■■□□□ 1.44
NLE1-205ENST00000588642 CFTRP13569 1480 aa24■■□□□ 1.43
NLE1-205ENST00000588642 NESP48681 1621 aa23.91■■□□□ 1.42
NLE1-205ENST00000588642 LAMC3Q9Y6N6 1575 aa23.86■■□□□ 1.41
NLE1-205ENST00000588642 CHIC1Q5VXU3 224 aa23.83■■□□□ 1.41
NLE1-205ENST00000588642 PDS5BQ9NTI5 1447 aa23.78■■□□□ 1.4
NLE1-205ENST00000588642 FANCD2Q9BXW9 1451 aa23.75■■□□□ 1.39
NLE1-205ENST00000588642 TRIM41Q8WV44 630 aa23.7■■□□□ 1.38
NLE1-205ENST00000588642 ABCC8Q09428 1581 aa23.67■■□□□ 1.38
NLE1-205ENST00000588642 PRDM2Q13029 1718 aa23.66■■□□□ 1.38
NLE1-205ENST00000588642 WRNQ14191 1432 aaPredicted RBP eCLIP23.65■■□□□ 1.38
NLE1-205ENST00000588642 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
NLE1-205ENST00000588642 ERCC6Q03468 1493 aa23.59■■□□□ 1.37
NLE1-205ENST00000588642 KIF21AQ7Z4S6 1674 aa23.51■■□□□ 1.35
NLE1-205ENST00000588642 CUX1P39880 1505 aa23.5■■□□□ 1.35
NLE1-205ENST00000588642 SYNJ1O43426 1573 aa23.48■■□□□ 1.35
NLE1-205ENST00000588642 MRC2Q9UBG0 1479 aa23.46■■□□□ 1.35
NLE1-205ENST00000588642 URB2Q14146 1524 aaKnown RBP23.44■■□□□ 1.34
NLE1-205ENST00000588642 TOP2BQ02880 1626 aa23.43■■□□□ 1.34
NLE1-205ENST00000588642 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
NLE1-205ENST00000588642 DNMBPQ6XZF7 1577 aa23.42■■□□□ 1.34
NLE1-205ENST00000588642 BIVM-ERCC5R4GMW8 1640 aa23.38■■□□□ 1.33
NLE1-205ENST00000588642 FGD5Q6ZNL6 1462 aa23.33■■□□□ 1.33
NLE1-205ENST00000588642 WDR62O43379 1518 aa23.29■■□□□ 1.32
NLE1-205ENST00000588642 THOC2Q8NI27 1593 aaKnown RBP23.27■■□□□ 1.32
NLE1-205ENST00000588642 POLA1P09884 1462 aaPredicted RBP23.27■■□□□ 1.32
NLE1-205ENST00000588642 SOGA1O94964 1423 aa23.26■■□□□ 1.31
NLE1-205ENST00000588642 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
NLE1-205ENST00000588642 RAD54L2Q9Y4B4 1467 aa23.22■■□□□ 1.31
NLE1-205ENST00000588642 CUX2O14529 1486 aa23.15■■□□□ 1.3
NLE1-205ENST00000588642 RUSC2Q8N2Y8 1516 aa23.13■■□□□ 1.29
NLE1-205ENST00000588642 KIF27Q86VH2 1401 aa23.12■■□□□ 1.29
NLE1-205ENST00000588642 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
NLE1-205ENST00000588642 ABCA10Q8WWZ4 1543 aa23.11■■□□□ 1.29
NLE1-205ENST00000588642 EEA1Q15075 1411 aa23.1■■□□□ 1.29
NLE1-205ENST00000588642 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.29
NLE1-205ENST00000588642 TDRD9Q8NDG6 1382 aaKnown RBP23.08■■□□□ 1.29
NLE1-205ENST00000588642 TARBP1Q13395 1621 aaKnown RBP23.05■■□□□ 1.28
NLE1-205ENST00000588642 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.272e-6■■■■■ 33.8
NLE1-205ENST00000588642 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
NLE1-205ENST00000588642 IGF1RP08069 1367 aa22.97■■□□□ 1.27
NLE1-205ENST00000588642 GAPVD1Q14C86 1478 aa22.97■■□□□ 1.27
NLE1-205ENST00000588642 WDR97A6NE52 1622 aa22.94■■□□□ 1.26
NLE1-205ENST00000588642 EHMT2Q96KQ7 1210 aa22.93■■□□□ 1.26
NLE1-205ENST00000588642 LOC105371045A0A1W2PR82 267 aa22.91■■□□□ 1.26
NLE1-205ENST00000588642 ABCA5Q8WWZ7 1642 aa22.89■■□□□ 1.25
NLE1-205ENST00000588642 GRIN2BQ13224 1484 aa22.86■■□□□ 1.25
NLE1-205ENST00000588642 CARMIL1Q5VZK9 1371 aa22.85■■□□□ 1.25
NLE1-205ENST00000588642 ERICH3Q5RHP9 1530 aa22.82■■□□□ 1.24
NLE1-205ENST00000588642 EIF4G3O43432 1585 aaKnown RBP22.82■■□□□ 1.24
NLE1-205ENST00000588642 PRXQ9BXM0 1461 aa22.8■■□□□ 1.24
NLE1-205ENST00000588642 UBTFP17480 764 aaKnown RBP22.77■■□□□ 1.24
NLE1-205ENST00000588642 GOLGA3Q08378 1498 aa22.75■■□□□ 1.23
NLE1-205ENST00000588642 RAPGEF2Q9Y4G8 1499 aa22.74■■□□□ 1.23
NLE1-205ENST00000588642 KIF21BO75037 1637 aa22.74■■□□□ 1.23
NLE1-205ENST00000588642 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
NLE1-205ENST00000588642 FHAD1B1AJZ9 1412 aa22.73■■□□□ 1.23
NLE1-205ENST00000588642 PBRM1Q86U86 1689 aa22.72■■□□□ 1.23
NLE1-205ENST00000588642 CUL7Q14999 1698 aa22.71■■□□□ 1.23
NLE1-205ENST00000588642 MAGI1Q96QZ7 1491 aaPredicted RBP22.69■■□□□ 1.22
NLE1-205ENST00000588642 FBLN2P98095 1184 aa22.68■■□□□ 1.22
NLE1-205ENST00000588642 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
NLE1-205ENST00000588642 ADAMTS12P58397 1594 aa22.64■■□□□ 1.22
NLE1-205ENST00000588642 TNIKQ9UKE5 1360 aa22.63■■□□□ 1.21
NLE1-205ENST00000588642 SYNJ2O15056 1496 aa22.6■■□□□ 1.21
NLE1-205ENST00000588642 GRIN2AQ12879 1464 aa22.54■■□□□ 1.2
NLE1-205ENST00000588642 RANGAP1P46060 587 aaPredicted RBP22.53■■□□□ 1.2
NLE1-205ENST00000588642 CEP162Q5TB80 1403 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms