RNA–Protein interactions for RNA: ENST00000588507.5

TPM4-210, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-210ENST00000588507 NISCHQ9Y2I1 1504 aa18.64■□□□□ 0.58
TPM4-210ENST00000588507 ABCC9O60706 1549 aa18.49■□□□□ 0.55
TPM4-210ENST00000588507 DNAJC5BQ9UF47 199 aa18.49■□□□□ 0.55
TPM4-210ENST00000588507 DNAJC5Q9H3Z4 198 aa17.93■□□□□ 0.46
TPM4-210ENST00000588507 CCDC180Q9P1Z9 1646 aa17.22■□□□□ 0.35
TPM4-210ENST00000588507 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
TPM4-210ENST00000588507 RB1CC1Q8TDY2 1594 aa17.04■□□□□ 0.32
TPM4-210ENST00000588507 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
TPM4-210ENST00000588507 NACADO15069 1562 aa16.63■□□□□ 0.25
TPM4-210ENST00000588507 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
TPM4-210ENST00000588507 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
TPM4-210ENST00000588507 UNC13AQ9UPW8 1703 aa16.56■□□□□ 0.24
TPM4-210ENST00000588507 BICRAQ9NZM4 1560 aa16.56■□□□□ 0.24
TPM4-210ENST00000588507 CUX2O14529 1486 aa16.46■□□□□ 0.23
TPM4-210ENST00000588507 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
TPM4-210ENST00000588507 EIF4G1Q04637 1599 aaKnown RBP16.27■□□□□ 0.2
TPM4-210ENST00000588507 SHROOM4Q9ULL8 1493 aa16.24■□□□□ 0.19
TPM4-210ENST00000588507 ERCC6Q03468 1493 aa16.07■□□□□ 0.16
TPM4-210ENST00000588507 AEBP2Q6ZN18 517 aaPredicted RBP16.02■□□□□ 0.16
TPM4-210ENST00000588507 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
TPM4-210ENST00000588507 SCRIBQ14160 1630 aa15.7■□□□□ 0.1
TPM4-210ENST00000588507 OSCARQ8IYS5 282 aa15.57■□□□□ 0.08
TPM4-210ENST00000588507 THOC2Q8NI27 1593 aaKnown RBP15.57■□□□□ 0.08
TPM4-210ENST00000588507 ILDR1Q86SU0 546 aaPredicted RBP15.55■□□□□ 0.08
TPM4-210ENST00000588507 TRHP20396 242 aaPredicted RBP15.53■□□□□ 0.08
TPM4-210ENST00000588507 NESP48681 1621 aa15.51■□□□□ 0.07
TPM4-210ENST00000588507 BAZ1AQ9NRL2 1556 aaPredicted RBP15.42■□□□□ 0.06
TPM4-210ENST00000588507 RIMBP3CA6NJZ7 1639 aa15.4■□□□□ 0.06
TPM4-210ENST00000588507 RIMBP3BA6NNM3 1639 aa15.4■□□□□ 0.06
TPM4-210ENST00000588507 RIMBP3Q9UFD9 1639 aa15.4■□□□□ 0.06
TPM4-210ENST00000588507 NCAPD3P42695 1498 aa15.4■□□□□ 0.06
TPM4-210ENST00000588507 SMARCA2P51531 1590 aa15.37■□□□□ 0.05
TPM4-210ENST00000588507 DCAF1Q9Y4B6 1507 aa15.32■□□□□ 0.04
TPM4-210ENST00000588507 CYB5RLQ6IPT4 315 aa15.28■□□□□ 0.04
TPM4-210ENST00000588507 ARHGEF11O15085 1522 aa15.24■□□□□ 0.03
TPM4-210ENST00000588507 KIF21AQ7Z4S6 1674 aa15.22■□□□□ 0.03
TPM4-210ENST00000588507 PDS5BQ9NTI5 1447 aa15.22■□□□□ 0.03
TPM4-210ENST00000588507 LAMC3Q9Y6N6 1575 aa15.2■□□□□ 0.02
TPM4-210ENST00000588507 ZCCHC6Q5VYS8 1495 aaKnown RBP15.16■□□□□ 0.02
TPM4-210ENST00000588507 ATAD2BQ9ULI0 1458 aa15.15■□□□□ 0.02
TPM4-210ENST00000588507 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
TPM4-210ENST00000588507 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
TPM4-210ENST00000588507 WDR62O43379 1518 aa15.1■□□□□ 0.01
TPM4-210ENST00000588507 ARAP1Q96P48 1450 aa15□□□□□ -0.01
TPM4-210ENST00000588507 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
TPM4-210ENST00000588507 CADPSQ9ULU8 1353 aa14.87□□□□□ -0.03
TPM4-210ENST00000588507 CEP164Q9UPV0 1460 aa14.81□□□□□ -0.04
TPM4-210ENST00000588507 RSF1Q96T23 1441 aaPredicted RBP14.79□□□□□ -0.04
TPM4-210ENST00000588507 SMARCA4P51532 1647 aa14.78□□□□□ -0.04
TPM4-210ENST00000588507 KDM4FA0A1W2PPD8 638 aa14.73□□□□□ -0.05
TPM4-210ENST00000588507 FBXO41Q8TF61 875 aa14.71□□□□□ -0.05
TPM4-210ENST00000588507 FANCD2Q9BXW9 1451 aa14.69□□□□□ -0.06
TPM4-210ENST00000588507 LMTK3Q96Q04 1460 aa14.68□□□□□ -0.06
TPM4-210ENST00000588507 ZNF608Q9ULD9 1512 aaPredicted RBP14.66□□□□□ -0.06
TPM4-210ENST00000588507 PEG3Q9GZU2 1588 aa14.65□□□□□ -0.06
TPM4-210ENST00000588507 SOCS7O14512 581 aa14.65□□□□□ -0.06
TPM4-210ENST00000588507 URB2Q14146 1524 aaKnown RBP14.62□□□□□ -0.07
TPM4-210ENST00000588507 FBLN2P98095 1184 aa14.6□□□□□ -0.07
TPM4-210ENST00000588507 ERCC6L2Q5T890 1561 aa14.6□□□□□ -0.07
TPM4-210ENST00000588507 CHD1O14646 1710 aa14.58□□□□□ -0.07
TPM4-210ENST00000588507 IFT140Q96RY7 1462 aa14.57□□□□□ -0.08
TPM4-210ENST00000588507 ILDR2Q71H61 639 aa14.49□□□□□ -0.09
TPM4-210ENST00000588507 EIF4G3O43432 1585 aaKnown RBP14.47□□□□□ -0.09
TPM4-210ENST00000588507 HECW2Q9P2P5 1572 aa14.46□□□□□ -0.09
TPM4-210ENST00000588507 CFTRP13569 1480 aa14.42□□□□□ -0.1
TPM4-210ENST00000588507 GAPVD1Q14C86 1478 aa14.42□□□□□ -0.1
TPM4-210ENST00000588507 CLASP1Q7Z460 1538 aa14.41□□□□□ -0.1
TPM4-210ENST00000588507 AQRO60306 1485 aaKnown RBP eCLIP14.39□□□□□ -0.117e-7■■■■□ 20.3
TPM4-210ENST00000588507 DISP3Q9P2K9 1392 aa14.34□□□□□ -0.11
TPM4-210ENST00000588507 MROH2BQ7Z745 1585 aa14.34□□□□□ -0.11
TPM4-210ENST00000588507 KIF13AQ9H1H9 1805 aa14.34□□□□□ -0.11
TPM4-210ENST00000588507 SYNJ2O15056 1496 aa14.33□□□□□ -0.12
TPM4-210ENST00000588507 SYNJ1O43426 1573 aa14.32□□□□□ -0.12
TPM4-210ENST00000588507 CHMP7Q8WUX9 453 aaPredicted RBP14.29□□□□□ -0.12
TPM4-210ENST00000588507 ADGRL1O94910 1474 aa14.27□□□□□ -0.12
TPM4-210ENST00000588507 KDM6BO15054 1643 aa14.26□□□□□ -0.13
TPM4-210ENST00000588507 FAM69CQ0P6D2 419 aa14.26□□□□□ -0.13
TPM4-210ENST00000588507 TOPBP1Q92547 1522 aa14.25□□□□□ -0.13
TPM4-210ENST00000588507 TARBP1Q13395 1621 aaKnown RBP14.19□□□□□ -0.14
TPM4-210ENST00000588507 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
TPM4-210ENST00000588507 ABCC8Q09428 1581 aa14.17□□□□□ -0.14
TPM4-210ENST00000588507 ABCC10Q5T3U5 1492 aa14.16□□□□□ -0.14
TPM4-210ENST00000588507 TDRD9Q8NDG6 1382 aaKnown RBP14.12□□□□□ -0.15
TPM4-210ENST00000588507 MAGI1Q96QZ7 1491 aaPredicted RBP14.1□□□□□ -0.15
TPM4-210ENST00000588507 WIZO95785 1651 aa14.09□□□□□ -0.15
TPM4-210ENST00000588507 PRDM2Q13029 1718 aa14.08□□□□□ -0.16
TPM4-210ENST00000588507 DNMBPQ6XZF7 1577 aa14.08□□□□□ -0.16
TPM4-210ENST00000588507 NPM1P06748 294 aaKnown RBP eCLIP14.04□□□□□ -0.16
TPM4-210ENST00000588507 DIP2BQ9P265 1576 aa14.04□□□□□ -0.16
TPM4-210ENST00000588507 POLA1P09884 1462 aaPredicted RBP14.03□□□□□ -0.16
TPM4-210ENST00000588507 RAD54L2Q9Y4B4 1467 aa14.01□□□□□ -0.17
TPM4-210ENST00000588507 SPATA31D1Q6ZQQ2 1576 aa14□□□□□ -0.17
TPM4-210ENST00000588507 TSPOAP1O95153 1857 aa14□□□□□ -0.17
TPM4-210ENST00000588507 GRIN2BQ13224 1484 aa13.99□□□□□ -0.17
TPM4-210ENST00000588507 SOGA1O94964 1423 aa13.98□□□□□ -0.17
TPM4-210ENST00000588507 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
TPM4-210ENST00000588507 MAPKBP1O60336 1514 aa13.98□□□□□ -0.17
TPM4-210ENST00000588507 CEP170Q5SW79 1584 aa13.96□□□□□ -0.17
TPM4-210ENST00000588507 CERKQ8TCT0 537 aa13.95□□□□□ -0.18
TPM4-210ENST00000588507 TOP2BQ02880 1626 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms