RNA–Protein interactions for RNA: ENST00000588269.1

PRKCSH-207, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 5

Gene PRKCSH, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-207ENST00000588269 NISCHQ9Y2I1 1504 aa28.53■■■□□ 2.16
PRKCSH-207ENST00000588269 ABCC9O60706 1549 aa25.82■■□□□ 1.72
PRKCSH-207ENST00000588269 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
PRKCSH-207ENST00000588269 DNAJC5BQ9UF47 199 aa24.4■■□□□ 1.5
PRKCSH-207ENST00000588269 RB1CC1Q8TDY2 1594 aa24.36■■□□□ 1.49
PRKCSH-207ENST00000588269 DCAF8L2P0C7V8 631 aa24.16■■□□□ 1.46
PRKCSH-207ENST00000588269 NACADO15069 1562 aa24.13■■□□□ 1.45
PRKCSH-207ENST00000588269 PABPN1Q86U42 306 aaKnown RBP eCLIP24.05■■□□□ 1.44
PRKCSH-207ENST00000588269 UNC13AQ9UPW8 1703 aa23.95■■□□□ 1.42
PRKCSH-207ENST00000588269 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
PRKCSH-207ENST00000588269 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
PRKCSH-207ENST00000588269 BICRAQ9NZM4 1560 aa23.76■■□□□ 1.39
PRKCSH-207ENST00000588269 DCAF1Q9Y4B6 1507 aa23.68■■□□□ 1.38
PRKCSH-207ENST00000588269 SCRIBQ14160 1630 aa23.39■■□□□ 1.33
PRKCSH-207ENST00000588269 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
PRKCSH-207ENST00000588269 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.3
PRKCSH-207ENST00000588269 SHROOM4Q9ULL8 1493 aa23.19■■□□□ 1.3
PRKCSH-207ENST00000588269 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
PRKCSH-207ENST00000588269 DNAJC5Q9H3Z4 198 aa22.37■■□□□ 1.17
PRKCSH-207ENST00000588269 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
PRKCSH-207ENST00000588269 ATAD2BQ9ULI0 1458 aa22.27■■□□□ 1.16
PRKCSH-207ENST00000588269 ERCC6Q03468 1493 aa22.22■■□□□ 1.15
PRKCSH-207ENST00000588269 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
PRKCSH-207ENST00000588269 BAZ1AQ9NRL2 1556 aaPredicted RBP22.21■■□□□ 1.15
PRKCSH-207ENST00000588269 NESP48681 1621 aa22.17■■□□□ 1.14
PRKCSH-207ENST00000588269 CUX2O14529 1486 aa22.15■■□□□ 1.14
PRKCSH-207ENST00000588269 SMARCA2P51531 1590 aa22.14■■□□□ 1.13
PRKCSH-207ENST00000588269 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
PRKCSH-207ENST00000588269 BAZ1BQ9UIG0 1483 aaKnown RBP22.04■■□□□ 1.12
PRKCSH-207ENST00000588269 PEG3Q9GZU2 1588 aa21.99■■□□□ 1.11
PRKCSH-207ENST00000588269 MROH2BQ7Z745 1585 aa21.97■■□□□ 1.11
PRKCSH-207ENST00000588269 THOC2Q8NI27 1593 aaKnown RBP21.89■■□□□ 1.09
PRKCSH-207ENST00000588269 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
PRKCSH-207ENST00000588269 LAMC3Q9Y6N6 1575 aa21.82■■□□□ 1.08
PRKCSH-207ENST00000588269 WIZO95785 1651 aa21.72■■□□□ 1.07
PRKCSH-207ENST00000588269 PDS5BQ9NTI5 1447 aa21.68■■□□□ 1.06
PRKCSH-207ENST00000588269 RSF1Q96T23 1441 aaPredicted RBP21.66■■□□□ 1.06
PRKCSH-207ENST00000588269 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
PRKCSH-207ENST00000588269 MRC2Q9UBG0 1479 aa21.57■■□□□ 1.04
PRKCSH-207ENST00000588269 TOP2AP11388 1531 aaKnown RBP21.56■■□□□ 1.04
PRKCSH-207ENST00000588269 WDR62O43379 1518 aa21.51■■□□□ 1.03
PRKCSH-207ENST00000588269 TRIM41Q8WV44 630 aa21.46■■□□□ 1.03
PRKCSH-207ENST00000588269 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
PRKCSH-207ENST00000588269 FANCD2Q9BXW9 1451 aa21.43■■□□□ 1.02
PRKCSH-207ENST00000588269 CFTRP13569 1480 aa21.36■■□□□ 1.01
PRKCSH-207ENST00000588269 URB2Q14146 1524 aaKnown RBP21.31■■□□□ 1
PRKCSH-207ENST00000588269 CCDC88BA6NC98 1476 aa21.21■□□□□ 0.99
PRKCSH-207ENST00000588269 PRDM2Q13029 1718 aa21.18■□□□□ 0.98
PRKCSH-207ENST00000588269 OSCARQ8IYS5 282 aa21.15■□□□□ 0.98
PRKCSH-207ENST00000588269 ZNF608Q9ULD9 1512 aaPredicted RBP21.1■□□□□ 0.97
PRKCSH-207ENST00000588269 TOPBP1Q92547 1522 aa21.02■□□□□ 0.96
PRKCSH-207ENST00000588269 SUPT5HO00267 1087 aaKnown RBP21■□□□□ 0.95
PRKCSH-207ENST00000588269 IFT140Q96RY7 1462 aa21■□□□□ 0.95
PRKCSH-207ENST00000588269 RIMBP3CA6NJZ7 1639 aa20.98■□□□□ 0.95
PRKCSH-207ENST00000588269 RIMBP3BA6NNM3 1639 aa20.98■□□□□ 0.95
PRKCSH-207ENST00000588269 RIMBP3Q9UFD9 1639 aa20.98■□□□□ 0.95
PRKCSH-207ENST00000588269 EIF4G3O43432 1585 aaKnown RBP20.93■□□□□ 0.94
PRKCSH-207ENST00000588269 ABCC8Q09428 1581 aa20.93■□□□□ 0.94
PRKCSH-207ENST00000588269 DNMBPQ6XZF7 1577 aa20.89■□□□□ 0.94
PRKCSH-207ENST00000588269 ARHGEF11O15085 1522 aa20.88■□□□□ 0.93
PRKCSH-207ENST00000588269 AQRO60306 1485 aaKnown RBP eCLIP20.88■□□□□ 0.93
PRKCSH-207ENST00000588269 CHD1O14646 1710 aa20.84■□□□□ 0.93
PRKCSH-207ENST00000588269 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
PRKCSH-207ENST00000588269 POLA1P09884 1462 aaPredicted RBP20.8■□□□□ 0.92
PRKCSH-207ENST00000588269 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
PRKCSH-207ENST00000588269 FBLN2P98095 1184 aa20.77■□□□□ 0.92
PRKCSH-207ENST00000588269 CYB5RLQ6IPT4 315 aa20.76■□□□□ 0.91
PRKCSH-207ENST00000588269 TDRD9Q8NDG6 1382 aaKnown RBP20.72■□□□□ 0.91
PRKCSH-207ENST00000588269 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
PRKCSH-207ENST00000588269 SOGA1O94964 1423 aa20.68■□□□□ 0.9
PRKCSH-207ENST00000588269 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
PRKCSH-207ENST00000588269 SNAPC4Q5SXM2 1469 aa20.64■□□□□ 0.89
PRKCSH-207ENST00000588269 CUX1P39880 1505 aa20.63■□□□□ 0.89
PRKCSH-207ENST00000588269 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
PRKCSH-207ENST00000588269 TRHP20396 242 aaPredicted RBP20.58■□□□□ 0.89
PRKCSH-207ENST00000588269 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
PRKCSH-207ENST00000588269 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
PRKCSH-207ENST00000588269 WRNQ14191 1432 aaPredicted RBP eCLIP20.51■□□□□ 0.87
PRKCSH-207ENST00000588269 GRIN2BQ13224 1484 aa20.49■□□□□ 0.87
PRKCSH-207ENST00000588269 MAGI1Q96QZ7 1491 aaPredicted RBP20.48■□□□□ 0.87
PRKCSH-207ENST00000588269 SYNJ1O43426 1573 aa20.47■□□□□ 0.87
PRKCSH-207ENST00000588269 PBRM1Q86U86 1689 aa20.47■□□□□ 0.87
PRKCSH-207ENST00000588269 TOP2BQ02880 1626 aa20.46■□□□□ 0.87
PRKCSH-207ENST00000588269 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
PRKCSH-207ENST00000588269 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
PRKCSH-207ENST00000588269 GAPVD1Q14C86 1478 aa20.42■□□□□ 0.86
PRKCSH-207ENST00000588269 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
PRKCSH-207ENST00000588269 ABCA5Q8WWZ7 1642 aa20.38■□□□□ 0.85
PRKCSH-207ENST00000588269 ERCC6L2Q5T890 1561 aa20.33■□□□□ 0.84
PRKCSH-207ENST00000588269 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
PRKCSH-207ENST00000588269 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
PRKCSH-207ENST00000588269 CEP170Q5SW79 1584 aa20.25■□□□□ 0.83
PRKCSH-207ENST00000588269 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
PRKCSH-207ENST00000588269 NUP160Q12769 1436 aa20.18■□□□□ 0.82
PRKCSH-207ENST00000588269 FHAD1B1AJZ9 1412 aa20.14■□□□□ 0.81
PRKCSH-207ENST00000588269 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
PRKCSH-207ENST00000588269 SHROOM2Q13796 1616 aa20.11■□□□□ 0.81
PRKCSH-207ENST00000588269 CUL7Q14999 1698 aa20.03■□□□□ 0.8
PRKCSH-207ENST00000588269 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
PRKCSH-207ENST00000588269 AEBP2Q6ZN18 517 aaPredicted RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms