RNA–Protein interactions for RNA: ENST00000588032.5

TPM4-207, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 712 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-207ENST00000588032 NISCHQ9Y2I1 1504 aa24.47■■□□□ 1.51
TPM4-207ENST00000588032 CCDC180Q9P1Z9 1646 aa21.73■■□□□ 1.07
TPM4-207ENST00000588032 ABCC9O60706 1549 aa21.29■■□□□ 1
TPM4-207ENST00000588032 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
TPM4-207ENST00000588032 RB1CC1Q8TDY2 1594 aa20.5■□□□□ 0.87
TPM4-207ENST00000588032 DCAF8L2P0C7V8 631 aa20.49■□□□□ 0.87
TPM4-207ENST00000588032 NACADO15069 1562 aa20.49■□□□□ 0.87
TPM4-207ENST00000588032 MYO15BQ96JP2 1530 aa20.39■□□□□ 0.85
TPM4-207ENST00000588032 ZCCHC6Q5VYS8 1495 aaKnown RBP20.36■□□□□ 0.85
TPM4-207ENST00000588032 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.84
TPM4-207ENST00000588032 UNC13AQ9UPW8 1703 aa19.92■□□□□ 0.78
TPM4-207ENST00000588032 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
TPM4-207ENST00000588032 BICRAQ9NZM4 1560 aa19.83■□□□□ 0.76
TPM4-207ENST00000588032 SCRIBQ14160 1630 aa19.79■□□□□ 0.76
TPM4-207ENST00000588032 SHROOM4Q9ULL8 1493 aa19.71■□□□□ 0.75
TPM4-207ENST00000588032 DNAJC5BQ9UF47 199 aa19.57■□□□□ 0.72
TPM4-207ENST00000588032 CHIC1Q5VXU3 224 aa19.34■□□□□ 0.69
TPM4-207ENST00000588032 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
TPM4-207ENST00000588032 CC2D2AQ9P2K1 1620 aa19.25■□□□□ 0.67
TPM4-207ENST00000588032 CECR2Q9BXF3 1484 aa19.16■□□□□ 0.66
TPM4-207ENST00000588032 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
TPM4-207ENST00000588032 SMARCA4P51532 1647 aa18.95■□□□□ 0.62
TPM4-207ENST00000588032 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
TPM4-207ENST00000588032 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
TPM4-207ENST00000588032 SMARCA2P51531 1590 aa18.89■□□□□ 0.61
TPM4-207ENST00000588032 MROH2BQ7Z745 1585 aa18.82■□□□□ 0.6
TPM4-207ENST00000588032 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
TPM4-207ENST00000588032 HMGXB3Q12766 1538 aa18.79■□□□□ 0.6
TPM4-207ENST00000588032 BAZ1BQ9UIG0 1483 aaKnown RBP18.74■□□□□ 0.59
TPM4-207ENST00000588032 RSF1Q96T23 1441 aaPredicted RBP18.64■□□□□ 0.57
TPM4-207ENST00000588032 WIZO95785 1651 aa18.59■□□□□ 0.57
TPM4-207ENST00000588032 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
TPM4-207ENST00000588032 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
TPM4-207ENST00000588032 NESP48681 1621 aa18.39■□□□□ 0.53
TPM4-207ENST00000588032 CADPSQ9ULU8 1353 aa18.38■□□□□ 0.53
TPM4-207ENST00000588032 ERCC6Q03468 1493 aa18.38■□□□□ 0.53
TPM4-207ENST00000588032 PDS5BQ9NTI5 1447 aa18.32■□□□□ 0.52
TPM4-207ENST00000588032 CFTRP13569 1480 aa18.24■□□□□ 0.51
TPM4-207ENST00000588032 CCDC88BA6NC98 1476 aa18.23■□□□□ 0.51
TPM4-207ENST00000588032 CUX2O14529 1486 aa18.21■□□□□ 0.51
TPM4-207ENST00000588032 SUPT5HO00267 1087 aaKnown RBP18.16■□□□□ 0.5
TPM4-207ENST00000588032 KIF21AQ7Z4S6 1674 aa18.13■□□□□ 0.49
TPM4-207ENST00000588032 FANCD2Q9BXW9 1451 aa18.13■□□□□ 0.49
TPM4-207ENST00000588032 THOC2Q8NI27 1593 aaKnown RBP18.1■□□□□ 0.49
TPM4-207ENST00000588032 CEP164Q9UPV0 1460 aa18.1■□□□□ 0.49
TPM4-207ENST00000588032 MRC2Q9UBG0 1479 aa18.08■□□□□ 0.49
TPM4-207ENST00000588032 WDR62O43379 1518 aa18.01■□□□□ 0.47
TPM4-207ENST00000588032 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
TPM4-207ENST00000588032 URB2Q14146 1524 aaKnown RBP17.92■□□□□ 0.46
TPM4-207ENST00000588032 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
TPM4-207ENST00000588032 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
TPM4-207ENST00000588032 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
TPM4-207ENST00000588032 DNMBPQ6XZF7 1577 aa17.79■□□□□ 0.44
TPM4-207ENST00000588032 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
TPM4-207ENST00000588032 DNAJC5Q9H3Z4 198 aa17.72■□□□□ 0.43
TPM4-207ENST00000588032 POLA1P09884 1462 aaPredicted RBP17.67■□□□□ 0.42
TPM4-207ENST00000588032 CUX1P39880 1505 aa17.66■□□□□ 0.42
TPM4-207ENST00000588032 SOGA1O94964 1423 aa17.64■□□□□ 0.42
TPM4-207ENST00000588032 FGD5Q6ZNL6 1462 aa17.62■□□□□ 0.41
TPM4-207ENST00000588032 ZNF608Q9ULD9 1512 aaPredicted RBP17.61■□□□□ 0.41
TPM4-207ENST00000588032 TARBP1Q13395 1621 aaKnown RBP17.6■□□□□ 0.41
TPM4-207ENST00000588032 WRNQ14191 1432 aaPredicted RBP eCLIP17.59■□□□□ 0.41
TPM4-207ENST00000588032 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.41
TPM4-207ENST00000588032 AQRO60306 1485 aaKnown RBP eCLIP17.54■□□□□ 0.46e-7■■■■□ 20.6
TPM4-207ENST00000588032 WDR97A6NE52 1622 aa17.52■□□□□ 0.4
TPM4-207ENST00000588032 EIF4G3O43432 1585 aaKnown RBP17.52■□□□□ 0.39
TPM4-207ENST00000588032 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.39
TPM4-207ENST00000588032 TOP2BQ02880 1626 aa17.51■□□□□ 0.39
TPM4-207ENST00000588032 OSCARQ8IYS5 282 aa17.51■□□□□ 0.39
TPM4-207ENST00000588032 BIVM-ERCC5R4GMW8 1640 aa17.49■□□□□ 0.39
TPM4-207ENST00000588032 ABCA10Q8WWZ4 1543 aa17.47■□□□□ 0.39
TPM4-207ENST00000588032 SYNJ1O43426 1573 aa17.47■□□□□ 0.39
TPM4-207ENST00000588032 PHF23Q9BUL5 403 aaPredicted RBP17.45■□□□□ 0.38
TPM4-207ENST00000588032 GRIN2BQ13224 1484 aa17.43■□□□□ 0.38
TPM4-207ENST00000588032 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
TPM4-207ENST00000588032 MAGI1Q96QZ7 1491 aaPredicted RBP17.38■□□□□ 0.37
TPM4-207ENST00000588032 FBLN2P98095 1184 aa17.37■□□□□ 0.37
TPM4-207ENST00000588032 SNAPC4Q5SXM2 1469 aa17.36■□□□□ 0.37
TPM4-207ENST00000588032 CHMP7Q8WUX9 453 aaPredicted RBP17.35■□□□□ 0.37
TPM4-207ENST00000588032 ABCA5Q8WWZ7 1642 aa17.35■□□□□ 0.37
TPM4-207ENST00000588032 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
TPM4-207ENST00000588032 PBRM1Q86U86 1689 aa17.29■□□□□ 0.36
TPM4-207ENST00000588032 CHD1O14646 1710 aa17.28■□□□□ 0.36
TPM4-207ENST00000588032 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
TPM4-207ENST00000588032 KIF27Q86VH2 1401 aa17.24■□□□□ 0.35
TPM4-207ENST00000588032 FHAD1B1AJZ9 1412 aa17.23■□□□□ 0.35
TPM4-207ENST00000588032 TRIM41Q8WV44 630 aa17.2■□□□□ 0.34
TPM4-207ENST00000588032 ADAMTS12P58397 1594 aa17.19■□□□□ 0.34
TPM4-207ENST00000588032 GRIN2AQ12879 1464 aa17.18■□□□□ 0.34
TPM4-207ENST00000588032 IGF1RP08069 1367 aa17.17■□□□□ 0.34
TPM4-207ENST00000588032 CLASP1Q7Z460 1538 aa17.15■□□□□ 0.34
TPM4-207ENST00000588032 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
TPM4-207ENST00000588032 NUP160Q12769 1436 aa17.12■□□□□ 0.33
TPM4-207ENST00000588032 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
TPM4-207ENST00000588032 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
TPM4-207ENST00000588032 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
TPM4-207ENST00000588032 CUL7Q14999 1698 aa17.07■□□□□ 0.32
TPM4-207ENST00000588032 CARMIL1Q5VZK9 1371 aa17.07■□□□□ 0.32
TPM4-207ENST00000588032 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
TPM4-207ENST00000588032 CYB5RLQ6IPT4 315 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms