RNA–Protein interactions for RNA: ENST00000587427.5

GHDC-207, Transcript of GH3 domain containing, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GHDC, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GHDC-207ENST00000587427 NISCHQ9Y2I1 1504 aa33.87■■■■□ 3.01
GHDC-207ENST00000587427 CCDC180Q9P1Z9 1646 aa29.76■■■□□ 2.35
GHDC-207ENST00000587427 ABCC9O60706 1549 aa29.02■■■□□ 2.24
GHDC-207ENST00000587427 DCAF8L2P0C7V8 631 aa28.42■■■□□ 2.14
GHDC-207ENST00000587427 ZCCHC6Q5VYS8 1495 aaKnown RBP28.29■■■□□ 2.12
GHDC-207ENST00000587427 NACADO15069 1562 aa27.91■■■□□ 2.06
GHDC-207ENST00000587427 RB1CC1Q8TDY2 1594 aa27.87■■■□□ 2.05
GHDC-207ENST00000587427 DCAF1Q9Y4B6 1507 aa27.87■■■□□ 2.05
GHDC-207ENST00000587427 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
GHDC-207ENST00000587427 SCRIBQ14160 1630 aa27.46■■□□□ 1.99
GHDC-207ENST00000587427 UNC13AQ9UPW8 1703 aa27.36■■□□□ 1.97
GHDC-207ENST00000587427 SHROOM4Q9ULL8 1493 aa27.35■■□□□ 1.97
GHDC-207ENST00000587427 PABPN1Q86U42 306 aaKnown RBP eCLIP27.3■■□□□ 1.96
GHDC-207ENST00000587427 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
GHDC-207ENST00000587427 SUPT5HO00267 1087 aaKnown RBP26.98■■□□□ 1.91
GHDC-207ENST00000587427 HRCP23327 699 aa26.72■■□□□ 1.87
GHDC-207ENST00000587427 CHIC1Q5VXU3 224 aa26.57■■□□□ 1.84
GHDC-207ENST00000587427 CECR2Q9BXF3 1484 aa26.49■■□□□ 1.83
GHDC-207ENST00000587427 PCGF6Q9BYE7 350 aa26.39■■□□□ 1.82
GHDC-207ENST00000587427 EIF4G1Q04637 1599 aaKnown RBP26.36■■□□□ 1.81
GHDC-207ENST00000587427 DNAJC5BQ9UF47 199 aa26.35■■□□□ 1.81
GHDC-207ENST00000587427 PPARGC1BQ86YN6 1023 aaKnown RBP26.25■■□□□ 1.79
GHDC-207ENST00000587427 MROH2BQ7Z745 1585 aa26.21■■□□□ 1.79
GHDC-207ENST00000587427 SMARCA4P51532 1647 aa26.19■■□□□ 1.78
GHDC-207ENST00000587427 CC2D2AQ9P2K1 1620 aa26.18■■□□□ 1.78
GHDC-207ENST00000587427 BAZ1AQ9NRL2 1556 aaPredicted RBP26.17■■□□□ 1.78
GHDC-207ENST00000587427 RSF1Q96T23 1441 aaPredicted RBP26.04■■□□□ 1.76
GHDC-207ENST00000587427 WIZO95785 1651 aa25.97■■□□□ 1.75
GHDC-207ENST00000587427 ATAD2BQ9ULI0 1458 aa25.95■■□□□ 1.75
GHDC-207ENST00000587427 SMARCA2P51531 1590 aa25.85■■□□□ 1.73
GHDC-207ENST00000587427 LOC105371045A0A1W2PR82 267 aa25.83■■□□□ 1.73
GHDC-207ENST00000587427 PEG3Q9GZU2 1588 aa25.82■■□□□ 1.72
GHDC-207ENST00000587427 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
GHDC-207ENST00000587427 BAZ1BQ9UIG0 1483 aaKnown RBP25.77■■□□□ 1.72
GHDC-207ENST00000587427 TRIM26Q12899 539 aaPredicted RBP25.68■■□□□ 1.7
GHDC-207ENST00000587427 HMGXB3Q12766 1538 aa25.68■■□□□ 1.7
GHDC-207ENST00000587427 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.69
GHDC-207ENST00000587427 ZEB1P37275 1124 aaPredicted RBP25.41■■□□□ 1.66
GHDC-207ENST00000587427 CCDC88BA6NC98 1476 aa25.37■■□□□ 1.65
GHDC-207ENST00000587427 NESP48681 1621 aa25.27■■□□□ 1.64
GHDC-207ENST00000587427 PELP1Q8IZL8 1130 aaKnown RBP25.18■■□□□ 1.62
GHDC-207ENST00000587427 TRIM41Q8WV44 630 aa25.13■■□□□ 1.61
GHDC-207ENST00000587427 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
GHDC-207ENST00000587427 SCAF1Q9H7N4 1312 aaKnown RBP25.13■■□□□ 1.61
GHDC-207ENST00000587427 CFTRP13569 1480 aa25.06■■□□□ 1.6
GHDC-207ENST00000587427 LAMC3Q9Y6N6 1575 aa25.03■■□□□ 1.6
GHDC-207ENST00000587427 FAM9AQ8IZU1 332 aaPredicted RBP24.96■■□□□ 1.59
GHDC-207ENST00000587427 ERCC6Q03468 1493 aa24.91■■□□□ 1.58
GHDC-207ENST00000587427 KIF21AQ7Z4S6 1674 aa24.89■■□□□ 1.57
GHDC-207ENST00000587427 PDS5BQ9NTI5 1447 aa24.88■■□□□ 1.57
GHDC-207ENST00000587427 FANCD2Q9BXW9 1451 aa24.88■■□□□ 1.57
GHDC-207ENST00000587427 EHMT2Q96KQ7 1210 aa24.86■■□□□ 1.57
GHDC-207ENST00000587427 PRDM2Q13029 1718 aa24.8■■□□□ 1.56
GHDC-207ENST00000587427 CEP164Q9UPV0 1460 aa24.77■■□□□ 1.56
GHDC-207ENST00000587427 ABCC8Q09428 1581 aa24.68■■□□□ 1.54
GHDC-207ENST00000587427 THOC2Q8NI27 1593 aaKnown RBP24.64■■□□□ 1.53
GHDC-207ENST00000587427 URB2Q14146 1524 aaKnown RBP24.64■■□□□ 1.53
GHDC-207ENST00000587427 MRC2Q9UBG0 1479 aa24.62■■□□□ 1.53
GHDC-207ENST00000587427 ACIN1Q9UKV3 1341 aaKnown RBP24.59■■□□□ 1.53
GHDC-207ENST00000587427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.58■■□□□ 1.53
GHDC-207ENST00000587427 NEUROD1Q13562 356 aa24.57■■□□□ 1.52
GHDC-207ENST00000587427 CUX1P39880 1505 aa24.54■■□□□ 1.52
GHDC-207ENST00000587427 TOPBP1Q92547 1522 aa24.52■■□□□ 1.52
GHDC-207ENST00000587427 WRNQ14191 1432 aaPredicted RBP eCLIP24.51■■□□□ 1.51
GHDC-207ENST00000587427 WDR62O43379 1518 aa24.51■■□□□ 1.51
GHDC-207ENST00000587427 CCER1Q8TC90 406 aaPredicted RBP24.49■■□□□ 1.51
GHDC-207ENST00000587427 SYNJ1O43426 1573 aa24.48■■□□□ 1.51
GHDC-207ENST00000587427 DNMBPQ6XZF7 1577 aa24.47■■□□□ 1.51
GHDC-207ENST00000587427 GTF3C3Q9Y5Q9 886 aa24.39■■□□□ 1.5
GHDC-207ENST00000587427 FGD5Q6ZNL6 1462 aa24.38■■□□□ 1.49
GHDC-207ENST00000587427 DIEXFQ68CQ4 756 aaKnown RBP24.37■■□□□ 1.49
GHDC-207ENST00000587427 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
GHDC-207ENST00000587427 TOP2BQ02880 1626 aa24.35■■□□□ 1.49
GHDC-207ENST00000587427 CUX2O14529 1486 aa24.35■■□□□ 1.49
GHDC-207ENST00000587427 RAD54L2Q9Y4B4 1467 aa24.35■■□□□ 1.49
GHDC-207ENST00000587427 BIVM-ERCC5R4GMW8 1640 aa24.32■■□□□ 1.48
GHDC-207ENST00000587427 CENPBP07199 599 aaPredicted RBP24.29■■□□□ 1.48
GHDC-207ENST00000587427 SOGA1O94964 1423 aa24.27■■□□□ 1.48
GHDC-207ENST00000587427 ZNF608Q9ULD9 1512 aaPredicted RBP24.22■■□□□ 1.47
GHDC-207ENST00000587427 TARBP1Q13395 1621 aaKnown RBP24.2■■□□□ 1.46
GHDC-207ENST00000587427 TTBK1Q5TCY1 1321 aaPredicted RBP24.2■■□□□ 1.46
GHDC-207ENST00000587427 TDRD9Q8NDG6 1382 aaKnown RBP24.18■■□□□ 1.46
GHDC-207ENST00000587427 IFT140Q96RY7 1462 aa24.18■■□□□ 1.46
GHDC-207ENST00000587427 CEP162Q5TB80 1403 aa24.18■■□□□ 1.46
GHDC-207ENST00000587427 TNIKQ9UKE5 1360 aa24.15■■□□□ 1.46
GHDC-207ENST00000587427 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.46
GHDC-207ENST00000587427 ABCA10Q8WWZ4 1543 aa24.08■■□□□ 1.45
GHDC-207ENST00000587427 EEA1Q15075 1411 aa24.07■■□□□ 1.44
GHDC-207ENST00000587427 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
GHDC-207ENST00000587427 MYT1Q01538 1121 aa24.07■■□□□ 1.44
GHDC-207ENST00000587427 RUSC2Q8N2Y8 1516 aa24.05■■□□□ 1.44
GHDC-207ENST00000587427 EIF4G3O43432 1585 aaKnown RBP24.05■■□□□ 1.44
GHDC-207ENST00000587427 ZNF316A6NFI3 1004 aaPredicted RBP24.02■■□□□ 1.44
GHDC-207ENST00000587427 GAPVD1Q14C86 1478 aa23.98■■□□□ 1.43
GHDC-207ENST00000587427 ABCA5Q8WWZ7 1642 aa23.95■■□□□ 1.43
GHDC-207ENST00000587427 YTHDC1Q96MU7 727 aaKnown RBP23.95■■□□□ 1.43
GHDC-207ENST00000587427 CSRNP3Q8WYN3 585 aa23.95■■□□□ 1.42
GHDC-207ENST00000587427 KIF27Q86VH2 1401 aa23.92■■□□□ 1.42
GHDC-207ENST00000587427 GOLGA3Q08378 1498 aa23.89■■□□□ 1.41
GHDC-207ENST00000587427 PBRM1Q86U86 1689 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms