RNA–Protein interactions for RNA: ENST00000587260.1

NFIX-208, Transcript of nuclear factor I X, humanhuman

TSL 1 (best) BASIC

Gene NFIX, Length 1,537 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIX-208ENST00000587260 NISCHQ9Y2I1 1504 aa35.15■■■■□ 3.22
NFIX-208ENST00000587260 CCDC180Q9P1Z9 1646 aa31.05■■■□□ 2.56
NFIX-208ENST00000587260 ABCC9O60706 1549 aa29.85■■■□□ 2.37
NFIX-208ENST00000587260 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
NFIX-208ENST00000587260 DCAF8L2P0C7V8 631 aa29.15■■■□□ 2.26
NFIX-208ENST00000587260 DCAF1Q9Y4B6 1507 aa29.06■■■□□ 2.24
NFIX-208ENST00000587260 NACADO15069 1562 aa28.99■■■□□ 2.23
NFIX-208ENST00000587260 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
NFIX-208ENST00000587260 RB1CC1Q8TDY2 1594 aa28.93■■■□□ 2.22
NFIX-208ENST00000587260 SCRIBQ14160 1630 aa28.46■■■□□ 2.15
NFIX-208ENST00000587260 UNC13AQ9UPW8 1703 aa28.41■■■□□ 2.14
NFIX-208ENST00000587260 SHROOM4Q9ULL8 1493 aa28.23■■■□□ 2.11
NFIX-208ENST00000587260 BICRAQ9NZM4 1560 aa28.05■■■□□ 2.08
NFIX-208ENST00000587260 PABPN1Q86U42 306 aaKnown RBP eCLIP27.95■■■□□ 2.06
NFIX-208ENST00000587260 CECR2Q9BXF3 1484 aa27.35■■□□□ 1.97
NFIX-208ENST00000587260 EIF4G1Q04637 1599 aaKnown RBP27.27■■□□□ 1.96
NFIX-208ENST00000587260 BAZ1AQ9NRL2 1556 aaPredicted RBP27.22■■□□□ 1.95
NFIX-208ENST00000587260 SMARCA4P51532 1647 aa27.22■■□□□ 1.95
NFIX-208ENST00000587260 MROH2BQ7Z745 1585 aa27.15■■□□□ 1.94
NFIX-208ENST00000587260 CC2D2AQ9P2K1 1620 aa27.03■■□□□ 1.92
NFIX-208ENST00000587260 DNAJC5BQ9UF47 199 aa27.03■■□□□ 1.92
NFIX-208ENST00000587260 RSF1Q96T23 1441 aaPredicted RBP26.98■■□□□ 1.91
NFIX-208ENST00000587260 WIZO95785 1651 aa26.95■■□□□ 1.9
NFIX-208ENST00000587260 PEG3Q9GZU2 1588 aa26.88■■□□□ 1.89
NFIX-208ENST00000587260 SMARCA2P51531 1590 aa26.86■■□□□ 1.89
NFIX-208ENST00000587260 ATAD2BQ9ULI0 1458 aa26.86■■□□□ 1.89
NFIX-208ENST00000587260 SUPT5HO00267 1087 aaKnown RBP26.78■■□□□ 1.88
NFIX-208ENST00000587260 NCAPD3P42695 1498 aa26.7■■□□□ 1.87
NFIX-208ENST00000587260 BAZ1BQ9UIG0 1483 aaKnown RBP26.7■■□□□ 1.87
NFIX-208ENST00000587260 HMGXB3Q12766 1538 aa26.7■■□□□ 1.86
NFIX-208ENST00000587260 TOP2AP11388 1531 aaKnown RBP26.63■■□□□ 1.85
NFIX-208ENST00000587260 CCDC88BA6NC98 1476 aa26.28■■□□□ 1.8
NFIX-208ENST00000587260 NESP48681 1621 aa26.02■■□□□ 1.76
NFIX-208ENST00000587260 LAMC3Q9Y6N6 1575 aa25.98■■□□□ 1.75
NFIX-208ENST00000587260 CADPSQ9ULU8 1353 aa25.96■■□□□ 1.75
NFIX-208ENST00000587260 PRDM2Q13029 1718 aa25.96■■□□□ 1.75
NFIX-208ENST00000587260 CFTRP13569 1480 aa25.95■■□□□ 1.75
NFIX-208ENST00000587260 KIF21AQ7Z4S6 1674 aa25.79■■□□□ 1.72
NFIX-208ENST00000587260 FANCD2Q9BXW9 1451 aa25.74■■□□□ 1.71
NFIX-208ENST00000587260 PDS5BQ9NTI5 1447 aa25.73■■□□□ 1.71
NFIX-208ENST00000587260 ERCC6Q03468 1493 aa25.68■■□□□ 1.7
NFIX-208ENST00000587260 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
NFIX-208ENST00000587260 ABCC8Q09428 1581 aa25.6■■□□□ 1.69
NFIX-208ENST00000587260 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
NFIX-208ENST00000587260 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
NFIX-208ENST00000587260 URB2Q14146 1524 aaKnown RBP25.46■■□□□ 1.67
NFIX-208ENST00000587260 WRNQ14191 1432 aaPredicted RBP eCLIP25.45■■□□□ 1.66
NFIX-208ENST00000587260 SYNJ1O43426 1573 aa25.44■■□□□ 1.66
NFIX-208ENST00000587260 CUX1P39880 1505 aa25.44■■□□□ 1.66
NFIX-208ENST00000587260 DNMBPQ6XZF7 1577 aa25.43■■□□□ 1.66
NFIX-208ENST00000587260 WDR62O43379 1518 aa25.4■■□□□ 1.66
NFIX-208ENST00000587260 TOPBP1Q92547 1522 aa25.39■■□□□ 1.66
NFIX-208ENST00000587260 BIVM-ERCC5R4GMW8 1640 aa25.39■■□□□ 1.65
NFIX-208ENST00000587260 TOP2BQ02880 1626 aa25.37■■□□□ 1.65
NFIX-208ENST00000587260 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
NFIX-208ENST00000587260 FGD5Q6ZNL6 1462 aa25.26■■□□□ 1.63
NFIX-208ENST00000587260 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
NFIX-208ENST00000587260 TRIM41Q8WV44 630 aa25.22■■□□□ 1.63
NFIX-208ENST00000587260 CUX2O14529 1486 aa25.14■■□□□ 1.62
NFIX-208ENST00000587260 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
NFIX-208ENST00000587260 TARBP1Q13395 1621 aaKnown RBP25.1■■□□□ 1.61
NFIX-208ENST00000587260 WDR97A6NE52 1622 aa25.09■■□□□ 1.61
NFIX-208ENST00000587260 SOGA1O94964 1423 aa25.07■■□□□ 1.6
NFIX-208ENST00000587260 IFT140Q96RY7 1462 aa25.06■■□□□ 1.6
NFIX-208ENST00000587260 ABCA10Q8WWZ4 1543 aa24.99■■□□□ 1.59
NFIX-208ENST00000587260 ZNF608Q9ULD9 1512 aaPredicted RBP24.95■■□□□ 1.59
NFIX-208ENST00000587260 EIF4G3O43432 1585 aaKnown RBP24.94■■□□□ 1.58
NFIX-208ENST00000587260 ABCA5Q8WWZ7 1642 aa24.92■■□□□ 1.58
NFIX-208ENST00000587260 TDRD9Q8NDG6 1382 aaKnown RBP24.89■■□□□ 1.58
NFIX-208ENST00000587260 RUSC2Q8N2Y8 1516 aa24.88■■□□□ 1.57
NFIX-208ENST00000587260 PBRM1Q86U86 1689 aa24.86■■□□□ 1.57
NFIX-208ENST00000587260 AQRO60306 1485 aaKnown RBP eCLIP24.85■■□□□ 1.578e-7■■■■□ 22.8
NFIX-208ENST00000587260 KIF27Q86VH2 1401 aa24.85■■□□□ 1.57
NFIX-208ENST00000587260 GAPVD1Q14C86 1478 aa24.82■■□□□ 1.56
NFIX-208ENST00000587260 FAM9AQ8IZU1 332 aaPredicted RBP24.76■■□□□ 1.55
NFIX-208ENST00000587260 GRIN2BQ13224 1484 aa24.73■■□□□ 1.55
NFIX-208ENST00000587260 EEA1Q15075 1411 aa24.72■■□□□ 1.55
NFIX-208ENST00000587260 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
NFIX-208ENST00000587260 SNAPC4Q5SXM2 1469 aa24.68■■□□□ 1.54
NFIX-208ENST00000587260 CUL7Q14999 1698 aa24.66■■□□□ 1.54
NFIX-208ENST00000587260 ADAMTS12P58397 1594 aa24.65■■□□□ 1.54
NFIX-208ENST00000587260 IGF1RP08069 1367 aa24.64■■□□□ 1.53
NFIX-208ENST00000587260 MAGI1Q96QZ7 1491 aaPredicted RBP24.61■■□□□ 1.53
NFIX-208ENST00000587260 CSRNP3Q8WYN3 585 aa24.59■■□□□ 1.53
NFIX-208ENST00000587260 CHD1O14646 1710 aa24.55■■□□□ 1.52
NFIX-208ENST00000587260 CARMIL1Q5VZK9 1371 aa24.53■■□□□ 1.52
NFIX-208ENST00000587260 FHAD1B1AJZ9 1412 aa24.53■■□□□ 1.52
NFIX-208ENST00000587260 KIF21BO75037 1637 aa24.53■■□□□ 1.52
NFIX-208ENST00000587260 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
NFIX-208ENST00000587260 PRXQ9BXM0 1461 aa24.51■■□□□ 1.51
NFIX-208ENST00000587260 EHMT2Q96KQ7 1210 aa24.47■■□□□ 1.51
NFIX-208ENST00000587260 RAPGEF2Q9Y4G8 1499 aa24.47■■□□□ 1.51
NFIX-208ENST00000587260 FBLN2P98095 1184 aa24.45■■□□□ 1.5
NFIX-208ENST00000587260 GRIN2AQ12879 1464 aa24.44■■□□□ 1.5
NFIX-208ENST00000587260 CHMP7Q8WUX9 453 aaPredicted RBP24.41■■□□□ 1.5
NFIX-208ENST00000587260 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
NFIX-208ENST00000587260 GOLGA3Q08378 1498 aa24.4■■□□□ 1.5
NFIX-208ENST00000587260 CEP170Q5SW79 1584 aa24.35■■□□□ 1.49
NFIX-208ENST00000587260 CTTNBP2Q8WZ74 1663 aa24.34■■□□□ 1.49
NFIX-208ENST00000587260 NUP160Q12769 1436 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms