RNA–Protein interactions for RNA: ENST00000587197.1

DNMT1-212, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 809 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-212ENST00000587197 NISCHQ9Y2I1 1504 aa41.55■■■■■ 4.24
DNMT1-212ENST00000587197 CCDC180Q9P1Z9 1646 aa37.11■■■■□ 3.53
DNMT1-212ENST00000587197 ABCC9O60706 1549 aa36.66■■■■□ 3.46
DNMT1-212ENST00000587197 RB1CC1Q8TDY2 1594 aa35.15■■■■□ 3.22
DNMT1-212ENST00000587197 NACADO15069 1562 aa35.01■■■■□ 3.2
DNMT1-212ENST00000587197 DCAF8L2P0C7V8 631 aa34.97■■■■□ 3.19
DNMT1-212ENST00000587197 MYO15BQ96JP2 1530 aa34.68■■■■□ 3.14
DNMT1-212ENST00000587197 ZCCHC6Q5VYS8 1495 aaKnown RBP34.52■■■■□ 3.12
DNMT1-212ENST00000587197 DCAF1Q9Y4B6 1507 aa34.38■■■■□ 3.09
DNMT1-212ENST00000587197 UNC13AQ9UPW8 1703 aa34.23■■■■□ 3.07
DNMT1-212ENST00000587197 PABPN1Q86U42 306 aaKnown RBP eCLIP34.21■■■■□ 3.07
DNMT1-212ENST00000587197 BICRAQ9NZM4 1560 aa34■■■■□ 3.03
DNMT1-212ENST00000587197 DNAJC5BQ9UF47 199 aa33.95■■■■□ 3.03
DNMT1-212ENST00000587197 SCRIBQ14160 1630 aa33.8■■■■□ 3
DNMT1-212ENST00000587197 SHROOM4Q9ULL8 1493 aa33.73■■■□□ 2.99
DNMT1-212ENST00000587197 EIF4G1Q04637 1599 aaKnown RBP33.18■■■□□ 2.9
DNMT1-212ENST00000587197 CC2D2AQ9P2K1 1620 aa33.14■■■□□ 2.9
DNMT1-212ENST00000587197 CECR2Q9BXF3 1484 aa33.01■■■□□ 2.88
DNMT1-212ENST00000587197 NCAPD3P42695 1498 aa32.3■■■□□ 2.76
DNMT1-212ENST00000587197 SMARCA4P51532 1647 aa32.3■■■□□ 2.76
DNMT1-212ENST00000587197 BAZ1AQ9NRL2 1556 aaPredicted RBP32.26■■■□□ 2.75
DNMT1-212ENST00000587197 ATAD2BQ9ULI0 1458 aa32.24■■■□□ 2.75
DNMT1-212ENST00000587197 SMARCA2P51531 1590 aa32.23■■■□□ 2.75
DNMT1-212ENST00000587197 HMGXB3Q12766 1538 aa32.1■■■□□ 2.73
DNMT1-212ENST00000587197 PEG3Q9GZU2 1588 aa32■■■□□ 2.71
DNMT1-212ENST00000587197 BAZ1BQ9UIG0 1483 aaKnown RBP31.98■■■□□ 2.71
DNMT1-212ENST00000587197 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
DNMT1-212ENST00000587197 ERCC6Q03468 1493 aa31.7■■■□□ 2.66
DNMT1-212ENST00000587197 RSF1Q96T23 1441 aaPredicted RBP31.65■■■□□ 2.66
DNMT1-212ENST00000587197 WIZO95785 1651 aa31.62■■■□□ 2.65
DNMT1-212ENST00000587197 NESP48681 1621 aa31.58■■■□□ 2.65
DNMT1-212ENST00000587197 LAMC3Q9Y6N6 1575 aa31.51■■■□□ 2.64
DNMT1-212ENST00000587197 CUX2O14529 1486 aa31.48■■■□□ 2.63
DNMT1-212ENST00000587197 PDS5BQ9NTI5 1447 aa31.37■■■□□ 2.61
DNMT1-212ENST00000587197 CADPSQ9ULU8 1353 aa31.36■■■□□ 2.61
DNMT1-212ENST00000587197 TOP2AP11388 1531 aaKnown RBP31.29■■■□□ 2.6
DNMT1-212ENST00000587197 KIF21AQ7Z4S6 1674 aa31.19■■■□□ 2.58
DNMT1-212ENST00000587197 THOC2Q8NI27 1593 aaKnown RBP31.18■■■□□ 2.58
DNMT1-212ENST00000587197 CFTRP13569 1480 aa31.07■■■□□ 2.56
DNMT1-212ENST00000587197 MRC2Q9UBG0 1479 aa31.01■■■□□ 2.56
DNMT1-212ENST00000587197 CEP164Q9UPV0 1460 aa31■■■□□ 2.55
DNMT1-212ENST00000587197 SUPT5HO00267 1087 aaKnown RBP30.99■■■□□ 2.55
DNMT1-212ENST00000587197 FANCD2Q9BXW9 1451 aa30.98■■■□□ 2.55
DNMT1-212ENST00000587197 DNAJC5Q9H3Z4 198 aa30.96■■■□□ 2.55
DNMT1-212ENST00000587197 CCDC88BA6NC98 1476 aa30.93■■■□□ 2.54
DNMT1-212ENST00000587197 WDR62O43379 1518 aa30.89■■■□□ 2.54
DNMT1-212ENST00000587197 PRDM2Q13029 1718 aa30.77■■■□□ 2.52
DNMT1-212ENST00000587197 URB2Q14146 1524 aaKnown RBP30.64■■■□□ 2.5
DNMT1-212ENST00000587197 ABCC8Q09428 1581 aa30.49■■■□□ 2.47
DNMT1-212ENST00000587197 TOPBP1Q92547 1522 aa30.42■■■□□ 2.46
DNMT1-212ENST00000587197 IFT140Q96RY7 1462 aa30.37■■■□□ 2.45
DNMT1-212ENST00000587197 DNMBPQ6XZF7 1577 aa30.37■■■□□ 2.45
DNMT1-212ENST00000587197 ZNF608Q9ULD9 1512 aaPredicted RBP30.19■■■□□ 2.42
DNMT1-212ENST00000587197 OSCARQ8IYS5 282 aa30.17■■■□□ 2.42
DNMT1-212ENST00000587197 POLA1P09884 1462 aaPredicted RBP30.13■■■□□ 2.41
DNMT1-212ENST00000587197 TARBP1Q13395 1621 aaKnown RBP30.09■■■□□ 2.41
DNMT1-212ENST00000587197 EIF4G3O43432 1585 aaKnown RBP30.07■■■□□ 2.4
DNMT1-212ENST00000587197 SOGA1O94964 1423 aa30.06■■■□□ 2.4
DNMT1-212ENST00000587197 CUX1P39880 1505 aa30.02■■■□□ 2.4
DNMT1-212ENST00000587197 FGD5Q6ZNL6 1462 aa30.02■■■□□ 2.4
DNMT1-212ENST00000587197 AQRO60306 1485 aaKnown RBP eCLIP30■■■□□ 2.396e-9■■□□□ 12.2
DNMT1-212ENST00000587197 RAD54L2Q9Y4B4 1467 aa29.99■■■□□ 2.39
DNMT1-212ENST00000587197 WDR97A6NE52 1622 aa29.91■■■□□ 2.38
DNMT1-212ENST00000587197 TDRD9Q8NDG6 1382 aaKnown RBP29.9■■■□□ 2.38
DNMT1-212ENST00000587197 WRNQ14191 1432 aaPredicted RBP eCLIP29.82■■■□□ 2.36
DNMT1-212ENST00000587197 FBLN2P98095 1184 aa29.81■■■□□ 2.36
DNMT1-212ENST00000587197 TRIM41Q8WV44 630 aa29.79■■■□□ 2.36
DNMT1-212ENST00000587197 CHD1O14646 1710 aa29.75■■■□□ 2.35
DNMT1-212ENST00000587197 GRIN2BQ13224 1484 aa29.74■■■□□ 2.35
DNMT1-212ENST00000587197 ABCA10Q8WWZ4 1543 aa29.72■■■□□ 2.35
DNMT1-212ENST00000587197 SNAPC4Q5SXM2 1469 aa29.72■■■□□ 2.35
DNMT1-212ENST00000587197 MAGI1Q96QZ7 1491 aaPredicted RBP29.71■■■□□ 2.35
DNMT1-212ENST00000587197 TOP2BQ02880 1626 aa29.7■■■□□ 2.34
DNMT1-212ENST00000587197 GAPVD1Q14C86 1478 aa29.69■■■□□ 2.34
DNMT1-212ENST00000587197 BIVM-ERCC5R4GMW8 1640 aa29.68■■■□□ 2.34
DNMT1-212ENST00000587197 CHMP7Q8WUX9 453 aaPredicted RBP29.68■■■□□ 2.34
DNMT1-212ENST00000587197 SYNJ1O43426 1573 aa29.65■■■□□ 2.34
DNMT1-212ENST00000587197 RIMBP3CA6NJZ7 1639 aa29.61■■■□□ 2.33
DNMT1-212ENST00000587197 RIMBP3BA6NNM3 1639 aa29.61■■■□□ 2.33
DNMT1-212ENST00000587197 RIMBP3Q9UFD9 1639 aa29.61■■■□□ 2.33
DNMT1-212ENST00000587197 PBRM1Q86U86 1689 aa29.6■■■□□ 2.33
DNMT1-212ENST00000587197 ABCA5Q8WWZ7 1642 aa29.6■■■□□ 2.33
DNMT1-212ENST00000587197 SYNJ2O15056 1496 aa29.59■■■□□ 2.33
DNMT1-212ENST00000587197 ARHGEF11O15085 1522 aa29.59■■■□□ 2.33
DNMT1-212ENST00000587197 CLASP1Q7Z460 1538 aa29.42■■■□□ 2.3
DNMT1-212ENST00000587197 CYB5RLQ6IPT4 315 aa29.39■■■□□ 2.3
DNMT1-212ENST00000587197 ERICH3Q5RHP9 1530 aa29.37■■■□□ 2.29
DNMT1-212ENST00000587197 FHAD1B1AJZ9 1412 aa29.35■■■□□ 2.29
DNMT1-212ENST00000587197 ADAMTS12P58397 1594 aa29.35■■■□□ 2.29
DNMT1-212ENST00000587197 GRIN2AQ12879 1464 aa29.34■■■□□ 2.29
DNMT1-212ENST00000587197 ARAP1Q96P48 1450 aa29.29■■■□□ 2.28
DNMT1-212ENST00000587197 NUP160Q12769 1436 aa29.21■■■□□ 2.27
DNMT1-212ENST00000587197 KIF27Q86VH2 1401 aa29.2■■■□□ 2.26
DNMT1-212ENST00000587197 CEP170Q5SW79 1584 aa29.17■■■□□ 2.26
DNMT1-212ENST00000587197 CHIC1Q5VXU3 224 aa29.16■■■□□ 2.26
DNMT1-212ENST00000587197 IGF1RP08069 1367 aa29.08■■■□□ 2.25
DNMT1-212ENST00000587197 CUL7Q14999 1698 aa29.03■■■□□ 2.24
DNMT1-212ENST00000587197 SHROOM2Q13796 1616 aa29.01■■■□□ 2.23
DNMT1-212ENST00000587197 JPH4Q96JJ6 628 aa28.98■■■□□ 2.23
DNMT1-212ENST00000587197 TRHP20396 242 aaPredicted RBP28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 207 ms