RNA–Protein interactions for RNA: ENST00000587171.1

H3F3B-205, Transcript of H3 histone family member 3B, humanhuman

TSL 2

Gene H3F3B, Length 586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3B-205ENST00000587171 NISCHQ9Y2I1 1504 aa32.74■■■□□ 2.83
H3F3B-205ENST00000587171 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
H3F3B-205ENST00000587171 ABCC9O60706 1549 aa28.94■■■□□ 2.22
H3F3B-205ENST00000587171 RB1CC1Q8TDY2 1594 aa27.72■■■□□ 2.03
H3F3B-205ENST00000587171 NACADO15069 1562 aa27.6■■■□□ 2.01
H3F3B-205ENST00000587171 DCAF8L2P0C7V8 631 aa27.39■■□□□ 1.98
H3F3B-205ENST00000587171 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
H3F3B-205ENST00000587171 ZCCHC6Q5VYS8 1495 aaKnown RBP27.21■■□□□ 1.95
H3F3B-205ENST00000587171 UNC13AQ9UPW8 1703 aa27.15■■□□□ 1.94
H3F3B-205ENST00000587171 DCAF1Q9Y4B6 1507 aa27.1■■□□□ 1.93
H3F3B-205ENST00000587171 PABPN1Q86U42 306 aaKnown RBP eCLIP26.94■■□□□ 1.9
H3F3B-205ENST00000587171 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
H3F3B-205ENST00000587171 DNAJC5BQ9UF47 199 aa26.87■■□□□ 1.89
H3F3B-205ENST00000587171 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
H3F3B-205ENST00000587171 SHROOM4Q9ULL8 1493 aa26.6■■□□□ 1.85
H3F3B-205ENST00000587171 EIF4G1Q04637 1599 aaKnown RBP26.21■■□□□ 1.79
H3F3B-205ENST00000587171 CC2D2AQ9P2K1 1620 aa26.2■■□□□ 1.78
H3F3B-205ENST00000587171 CECR2Q9BXF3 1484 aa26.05■■□□□ 1.76
H3F3B-205ENST00000587171 SMARCA4P51532 1647 aa25.49■■□□□ 1.67
H3F3B-205ENST00000587171 NCAPD3P42695 1498 aa25.47■■□□□ 1.67
H3F3B-205ENST00000587171 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
H3F3B-205ENST00000587171 BAZ1AQ9NRL2 1556 aaPredicted RBP25.4■■□□□ 1.66
H3F3B-205ENST00000587171 SMARCA2P51531 1590 aa25.39■■□□□ 1.65
H3F3B-205ENST00000587171 HMGXB3Q12766 1538 aa25.33■■□□□ 1.65
H3F3B-205ENST00000587171 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
H3F3B-205ENST00000587171 MROH2BQ7Z745 1585 aa25.22■■□□□ 1.63
H3F3B-205ENST00000587171 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
H3F3B-205ENST00000587171 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
H3F3B-205ENST00000587171 NESP48681 1621 aa24.95■■□□□ 1.58
H3F3B-205ENST00000587171 WIZO95785 1651 aa24.94■■□□□ 1.58
H3F3B-205ENST00000587171 LAMC3Q9Y6N6 1575 aa24.86■■□□□ 1.57
H3F3B-205ENST00000587171 CUX2O14529 1486 aa24.86■■□□□ 1.57
H3F3B-205ENST00000587171 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
H3F3B-205ENST00000587171 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
H3F3B-205ENST00000587171 THOC2Q8NI27 1593 aaKnown RBP24.69■■□□□ 1.54
H3F3B-205ENST00000587171 CADPSQ9ULU8 1353 aa24.68■■□□□ 1.54
H3F3B-205ENST00000587171 PDS5BQ9NTI5 1447 aa24.68■■□□□ 1.54
H3F3B-205ENST00000587171 TOP2AP11388 1531 aaKnown RBP24.66■■□□□ 1.54
H3F3B-205ENST00000587171 CFTRP13569 1480 aa24.48■■□□□ 1.51
H3F3B-205ENST00000587171 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
H3F3B-205ENST00000587171 MRC2Q9UBG0 1479 aa24.45■■□□□ 1.51
H3F3B-205ENST00000587171 CEP164Q9UPV0 1460 aa24.42■■□□□ 1.5
H3F3B-205ENST00000587171 FANCD2Q9BXW9 1451 aa24.41■■□□□ 1.5
H3F3B-205ENST00000587171 WDR62O43379 1518 aa24.4■■□□□ 1.5
H3F3B-205ENST00000587171 CCDC88BA6NC98 1476 aa24.34■■□□□ 1.49
H3F3B-205ENST00000587171 PRDM2Q13029 1718 aa24.34■■□□□ 1.49
H3F3B-205ENST00000587171 URB2Q14146 1524 aaKnown RBP24.2■■□□□ 1.46
H3F3B-205ENST00000587171 TOPBP1Q92547 1522 aa23.99■■□□□ 1.43
H3F3B-205ENST00000587171 ABCC8Q09428 1581 aa23.96■■□□□ 1.43
H3F3B-205ENST00000587171 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.42
H3F3B-205ENST00000587171 IFT140Q96RY7 1462 aa23.92■■□□□ 1.42
H3F3B-205ENST00000587171 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
H3F3B-205ENST00000587171 SUPT5HO00267 1087 aaKnown RBP23.83■■□□□ 1.41
H3F3B-205ENST00000587171 TARBP1Q13395 1621 aaKnown RBP23.78■■□□□ 1.4
H3F3B-205ENST00000587171 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
H3F3B-205ENST00000587171 EIF4G3O43432 1585 aaKnown RBP23.76■■□□□ 1.39
H3F3B-205ENST00000587171 OSCARQ8IYS5 282 aa23.71■■□□□ 1.39
H3F3B-205ENST00000587171 CUX1P39880 1505 aa23.69■■□□□ 1.38
H3F3B-205ENST00000587171 AQRO60306 1485 aaKnown RBP eCLIP23.65■■□□□ 1.382e-9■■■■□ 20.2
H3F3B-205ENST00000587171 FGD5Q6ZNL6 1462 aa23.65■■□□□ 1.38
H3F3B-205ENST00000587171 RAD54L2Q9Y4B4 1467 aa23.64■■□□□ 1.38
H3F3B-205ENST00000587171 SOGA1O94964 1423 aa23.63■■□□□ 1.37
H3F3B-205ENST00000587171 WDR97A6NE52 1622 aa23.58■■□□□ 1.36
H3F3B-205ENST00000587171 CHD1O14646 1710 aa23.54■■□□□ 1.36
H3F3B-205ENST00000587171 TDRD9Q8NDG6 1382 aaKnown RBP23.53■■□□□ 1.36
H3F3B-205ENST00000587171 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
H3F3B-205ENST00000587171 RIMBP3CA6NJZ7 1639 aa23.44■■□□□ 1.34
H3F3B-205ENST00000587171 RIMBP3BA6NNM3 1639 aa23.44■■□□□ 1.34
H3F3B-205ENST00000587171 RIMBP3Q9UFD9 1639 aa23.44■■□□□ 1.34
H3F3B-205ENST00000587171 SNAPC4Q5SXM2 1469 aa23.43■■□□□ 1.34
H3F3B-205ENST00000587171 ABCA10Q8WWZ4 1543 aa23.42■■□□□ 1.34
H3F3B-205ENST00000587171 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
H3F3B-205ENST00000587171 GRIN2BQ13224 1484 aa23.41■■□□□ 1.34
H3F3B-205ENST00000587171 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
H3F3B-205ENST00000587171 MAGI1Q96QZ7 1491 aaPredicted RBP23.4■■□□□ 1.34
H3F3B-205ENST00000587171 ARHGEF11O15085 1522 aa23.38■■□□□ 1.33
H3F3B-205ENST00000587171 PBRM1Q86U86 1689 aa23.38■■□□□ 1.33
H3F3B-205ENST00000587171 FBLN2P98095 1184 aa23.38■■□□□ 1.33
H3F3B-205ENST00000587171 WRNQ14191 1432 aaPredicted RBP eCLIP23.38■■□□□ 1.337e-8■□□□□ 11.3
H3F3B-205ENST00000587171 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
H3F3B-205ENST00000587171 SYNJ1O43426 1573 aa23.37■■□□□ 1.33
H3F3B-205ENST00000587171 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
H3F3B-205ENST00000587171 SYNJ2O15056 1496 aa23.31■■□□□ 1.32
H3F3B-205ENST00000587171 CHMP7Q8WUX9 453 aaPredicted RBP23.28■■□□□ 1.32
H3F3B-205ENST00000587171 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
H3F3B-205ENST00000587171 ARAP1Q96P48 1450 aa23.17■■□□□ 1.3
H3F3B-205ENST00000587171 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
H3F3B-205ENST00000587171 ERICH3Q5RHP9 1530 aa23.13■■□□□ 1.29
H3F3B-205ENST00000587171 CYB5RLQ6IPT4 315 aa23.13■■□□□ 1.29
H3F3B-205ENST00000587171 GRIN2AQ12879 1464 aa23.12■■□□□ 1.29
H3F3B-205ENST00000587171 FHAD1B1AJZ9 1412 aa23.08■■□□□ 1.29
H3F3B-205ENST00000587171 NUP160Q12769 1436 aa23.04■■□□□ 1.28
H3F3B-205ENST00000587171 CEP170Q5SW79 1584 aa23.03■■□□□ 1.28
H3F3B-205ENST00000587171 SHROOM2Q13796 1616 aa22.93■■□□□ 1.26
H3F3B-205ENST00000587171 KIF27Q86VH2 1401 aa22.91■■□□□ 1.26
H3F3B-205ENST00000587171 ERCC6L2Q5T890 1561 aa22.9■■□□□ 1.26
H3F3B-205ENST00000587171 IGF1RP08069 1367 aa22.87■■□□□ 1.25
H3F3B-205ENST00000587171 CUL7Q14999 1698 aa22.87■■□□□ 1.25
H3F3B-205ENST00000587171 RUSC2Q8N2Y8 1516 aa22.84■■□□□ 1.25
H3F3B-205ENST00000587171 PRG4Q92954 1404 aaPredicted RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms