RNA–Protein interactions for RNA: ENST00000586892.1

SMARCA4-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 4

Gene SMARCA4, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-210ENST00000586892 NISCHQ9Y2I1 1504 aa32.41■■■□□ 2.78
SMARCA4-210ENST00000586892 CCDC180Q9P1Z9 1646 aa28.89■■■□□ 2.22
SMARCA4-210ENST00000586892 ABCC9O60706 1549 aa28.23■■■□□ 2.11
SMARCA4-210ENST00000586892 RB1CC1Q8TDY2 1594 aa27.2■■□□□ 1.94
SMARCA4-210ENST00000586892 NACADO15069 1562 aa27.15■■□□□ 1.94
SMARCA4-210ENST00000586892 DCAF8L2P0C7V8 631 aa27.04■■□□□ 1.92
SMARCA4-210ENST00000586892 MYO15BQ96JP2 1530 aa27■■□□□ 1.91
SMARCA4-210ENST00000586892 ZCCHC6Q5VYS8 1495 aaKnown RBP27■■□□□ 1.91
SMARCA4-210ENST00000586892 DCAF1Q9Y4B6 1507 aa26.85■■□□□ 1.89
SMARCA4-210ENST00000586892 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
SMARCA4-210ENST00000586892 PABPN1Q86U42 306 aaKnown RBP eCLIP26.35■■□□□ 1.81
SMARCA4-210ENST00000586892 BICRAQ9NZM4 1560 aa26.35■■□□□ 1.81
SMARCA4-210ENST00000586892 SCRIBQ14160 1630 aa26.3■■□□□ 1.8
SMARCA4-210ENST00000586892 SHROOM4Q9ULL8 1493 aa26.13■■□□□ 1.77
SMARCA4-210ENST00000586892 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
SMARCA4-210ENST00000586892 EIF4G1Q04637 1599 aaKnown RBP25.67■■□□□ 1.7
SMARCA4-210ENST00000586892 CC2D2AQ9P2K1 1620 aa25.57■■□□□ 1.68
SMARCA4-210ENST00000586892 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
SMARCA4-210ENST00000586892 SMARCA4P51532 1647 aa25.17■■□□□ 1.62
SMARCA4-210ENST00000586892 BAZ1AQ9NRL2 1556 aaPredicted RBP25.14■■□□□ 1.62
SMARCA4-210ENST00000586892 SMARCA2P51531 1590 aa25.04■■□□□ 1.6
SMARCA4-210ENST00000586892 NCAPD3P42695 1498 aa25.03■■□□□ 1.6
SMARCA4-210ENST00000586892 ATAD2BQ9ULI0 1458 aa25.03■■□□□ 1.6
SMARCA4-210ENST00000586892 MROH2BQ7Z745 1585 aa24.96■■□□□ 1.59
SMARCA4-210ENST00000586892 PEG3Q9GZU2 1588 aa24.95■■□□□ 1.58
SMARCA4-210ENST00000586892 HMGXB3Q12766 1538 aa24.93■■□□□ 1.58
SMARCA4-210ENST00000586892 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
SMARCA4-210ENST00000586892 WIZO95785 1651 aa24.7■■□□□ 1.54
SMARCA4-210ENST00000586892 RSF1Q96T23 1441 aaPredicted RBP24.66■■□□□ 1.54
SMARCA4-210ENST00000586892 TOP2AP11388 1531 aaKnown RBP24.45■■□□□ 1.51
SMARCA4-210ENST00000586892 NESP48681 1621 aa24.42■■□□□ 1.5
SMARCA4-210ENST00000586892 LAMC3Q9Y6N6 1575 aa24.42■■□□□ 1.5
SMARCA4-210ENST00000586892 ERCC6Q03468 1493 aa24.38■■□□□ 1.49
SMARCA4-210ENST00000586892 CADPSQ9ULU8 1353 aa24.29■■□□□ 1.48
SMARCA4-210ENST00000586892 PDS5BQ9NTI5 1447 aa24.24■■□□□ 1.47
SMARCA4-210ENST00000586892 KIF21AQ7Z4S6 1674 aa24.17■■□□□ 1.46
SMARCA4-210ENST00000586892 CUX2O14529 1486 aa24.15■■□□□ 1.46
SMARCA4-210ENST00000586892 CFTRP13569 1480 aa24.15■■□□□ 1.46
SMARCA4-210ENST00000586892 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
SMARCA4-210ENST00000586892 THOC2Q8NI27 1593 aaKnown RBP24.1■■□□□ 1.45
SMARCA4-210ENST00000586892 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
SMARCA4-210ENST00000586892 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
SMARCA4-210ENST00000586892 CEP164Q9UPV0 1460 aa24.01■■□□□ 1.43
SMARCA4-210ENST00000586892 MRC2Q9UBG0 1479 aa23.98■■□□□ 1.43
SMARCA4-210ENST00000586892 SUPT5HO00267 1087 aaKnown RBP23.95■■□□□ 1.42
SMARCA4-210ENST00000586892 WDR62O43379 1518 aa23.91■■□□□ 1.42
SMARCA4-210ENST00000586892 URB2Q14146 1524 aaKnown RBP23.77■■□□□ 1.4
SMARCA4-210ENST00000586892 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
SMARCA4-210ENST00000586892 TOPBP1Q92547 1522 aa23.63■■□□□ 1.37
SMARCA4-210ENST00000586892 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
SMARCA4-210ENST00000586892 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
SMARCA4-210ENST00000586892 DNAJC5Q9H3Z4 198 aa23.43■■□□□ 1.34
SMARCA4-210ENST00000586892 CUX1P39880 1505 aa23.43■■□□□ 1.34
SMARCA4-210ENST00000586892 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
SMARCA4-210ENST00000586892 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
SMARCA4-210ENST00000586892 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
SMARCA4-210ENST00000586892 FGD5Q6ZNL6 1462 aa23.36■■□□□ 1.33
SMARCA4-210ENST00000586892 SOGA1O94964 1423 aa23.32■■□□□ 1.32
SMARCA4-210ENST00000586892 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
SMARCA4-210ENST00000586892 RAD54L2Q9Y4B4 1467 aa23.3■■□□□ 1.32
SMARCA4-210ENST00000586892 WRNQ14191 1432 aaPredicted RBP eCLIP23.26■■□□□ 1.31
SMARCA4-210ENST00000586892 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
SMARCA4-210ENST00000586892 TOP2BQ02880 1626 aa23.24■■□□□ 1.31
SMARCA4-210ENST00000586892 BIVM-ERCC5R4GMW8 1640 aa23.24■■□□□ 1.31
SMARCA4-210ENST00000586892 AQRO60306 1485 aaKnown RBP eCLIP23.23■■□□□ 1.31
SMARCA4-210ENST00000586892 SYNJ1O43426 1573 aa23.21■■□□□ 1.31
SMARCA4-210ENST00000586892 TDRD9Q8NDG6 1382 aaKnown RBP23.18■■□□□ 1.3
SMARCA4-210ENST00000586892 ABCA10Q8WWZ4 1543 aa23.14■■□□□ 1.3
SMARCA4-210ENST00000586892 OSCARQ8IYS5 282 aa23.11■■□□□ 1.29
SMARCA4-210ENST00000586892 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
SMARCA4-210ENST00000586892 ABCA5Q8WWZ7 1642 aa23.07■■□□□ 1.28
SMARCA4-210ENST00000586892 GAPVD1Q14C86 1478 aa23.06■■□□□ 1.28
SMARCA4-210ENST00000586892 PBRM1Q86U86 1689 aa23.04■■□□□ 1.28
SMARCA4-210ENST00000586892 SNAPC4Q5SXM2 1469 aa23.04■■□□□ 1.28
SMARCA4-210ENST00000586892 CHD1O14646 1710 aa23.03■■□□□ 1.28
SMARCA4-210ENST00000586892 MAGI1Q96QZ7 1491 aaPredicted RBP23.03■■□□□ 1.28
SMARCA4-210ENST00000586892 FBLN2P98095 1184 aa22.96■■□□□ 1.27
SMARCA4-210ENST00000586892 SYNJ2O15056 1496 aa22.93■■□□□ 1.26
SMARCA4-210ENST00000586892 CHMP7Q8WUX9 453 aaPredicted RBP22.9■■□□□ 1.26
SMARCA4-210ENST00000586892 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
SMARCA4-210ENST00000586892 ADAMTS12P58397 1594 aa22.84■■□□□ 1.25
SMARCA4-210ENST00000586892 FHAD1B1AJZ9 1412 aa22.8■■□□□ 1.24
SMARCA4-210ENST00000586892 KIF27Q86VH2 1401 aa22.79■■□□□ 1.24
SMARCA4-210ENST00000586892 CLASP1Q7Z460 1538 aa22.77■■□□□ 1.24
SMARCA4-210ENST00000586892 GRIN2AQ12879 1464 aa22.77■■□□□ 1.24
SMARCA4-210ENST00000586892 RIMBP3CA6NJZ7 1639 aa22.76■■□□□ 1.23
SMARCA4-210ENST00000586892 RIMBP3BA6NNM3 1639 aa22.76■■□□□ 1.23
SMARCA4-210ENST00000586892 RIMBP3Q9UFD9 1639 aa22.76■■□□□ 1.23
SMARCA4-210ENST00000586892 ARHGEF11O15085 1522 aa22.75■■□□□ 1.23
SMARCA4-210ENST00000586892 CUL7Q14999 1698 aa22.68■■□□□ 1.22
SMARCA4-210ENST00000586892 IGF1RP08069 1367 aa22.68■■□□□ 1.22
SMARCA4-210ENST00000586892 NUP160Q12769 1436 aa22.67■■□□□ 1.22
SMARCA4-210ENST00000586892 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
SMARCA4-210ENST00000586892 CEP170Q5SW79 1584 aa22.66■■□□□ 1.22
SMARCA4-210ENST00000586892 ARAP1Q96P48 1450 aa22.55■■□□□ 1.2
SMARCA4-210ENST00000586892 CARMIL1Q5VZK9 1371 aa22.55■■□□□ 1.2
SMARCA4-210ENST00000586892 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
SMARCA4-210ENST00000586892 RUSC2Q8N2Y8 1516 aa22.52■■□□□ 1.19
SMARCA4-210ENST00000586892 CYB5RLQ6IPT4 315 aa22.51■■□□□ 1.19
SMARCA4-210ENST00000586892 KIAA0586Q9BVV6 1533 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms