RNA–Protein interactions for RNA: ENST00000586835.1

TMED1-202, Transcript of transmembrane p24 trafficking protein 1, humanhuman

TSL 2

Gene TMED1, Length 713 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED1-202ENST00000586835 NISCHQ9Y2I1 1504 aa32.87■■■□□ 2.85
TMED1-202ENST00000586835 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
TMED1-202ENST00000586835 ABCC9O60706 1549 aa28.7■■■□□ 2.19
TMED1-202ENST00000586835 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
TMED1-202ENST00000586835 NACADO15069 1562 aa27.53■■■□□ 2
TMED1-202ENST00000586835 DCAF8L2P0C7V8 631 aa27.5■■□□□ 1.99
TMED1-202ENST00000586835 ZCCHC6Q5VYS8 1495 aaKnown RBP27.35■■□□□ 1.97
TMED1-202ENST00000586835 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
TMED1-202ENST00000586835 DCAF1Q9Y4B6 1507 aa27.2■■□□□ 1.94
TMED1-202ENST00000586835 UNC13AQ9UPW8 1703 aa26.93■■□□□ 1.9
TMED1-202ENST00000586835 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
TMED1-202ENST00000586835 BICRAQ9NZM4 1560 aa26.75■■□□□ 1.87
TMED1-202ENST00000586835 DNAJC5BQ9UF47 199 aa26.69■■□□□ 1.86
TMED1-202ENST00000586835 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
TMED1-202ENST00000586835 SHROOM4Q9ULL8 1493 aa26.46■■□□□ 1.83
TMED1-202ENST00000586835 EIF4G1Q04637 1599 aaKnown RBP26.04■■□□□ 1.76
TMED1-202ENST00000586835 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
TMED1-202ENST00000586835 CECR2Q9BXF3 1484 aa25.81■■□□□ 1.72
TMED1-202ENST00000586835 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
TMED1-202ENST00000586835 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
TMED1-202ENST00000586835 NCAPD3P42695 1498 aa25.42■■□□□ 1.66
TMED1-202ENST00000586835 ATAD2BQ9ULI0 1458 aa25.41■■□□□ 1.66
TMED1-202ENST00000586835 SMARCA2P51531 1590 aa25.36■■□□□ 1.65
TMED1-202ENST00000586835 MROH2BQ7Z745 1585 aa25.32■■□□□ 1.64
TMED1-202ENST00000586835 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
TMED1-202ENST00000586835 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
TMED1-202ENST00000586835 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
TMED1-202ENST00000586835 DNAJC5Q9H3Z4 198 aa25.13■■□□□ 1.61
TMED1-202ENST00000586835 WIZO95785 1651 aa25.04■■□□□ 1.6
TMED1-202ENST00000586835 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
TMED1-202ENST00000586835 NESP48681 1621 aa24.82■■□□□ 1.56
TMED1-202ENST00000586835 TOP2AP11388 1531 aaKnown RBP24.76■■□□□ 1.55
TMED1-202ENST00000586835 LAMC3Q9Y6N6 1575 aa24.74■■□□□ 1.55
TMED1-202ENST00000586835 ERCC6Q03468 1493 aa24.73■■□□□ 1.55
TMED1-202ENST00000586835 SUPT5HO00267 1087 aaKnown RBP24.68■■□□□ 1.54
TMED1-202ENST00000586835 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
TMED1-202ENST00000586835 PDS5BQ9NTI5 1447 aa24.59■■□□□ 1.53
TMED1-202ENST00000586835 CUX2O14529 1486 aa24.52■■□□□ 1.52
TMED1-202ENST00000586835 KIF21AQ7Z4S6 1674 aa24.5■■□□□ 1.51
TMED1-202ENST00000586835 CCDC88BA6NC98 1476 aa24.5■■□□□ 1.51
TMED1-202ENST00000586835 CFTRP13569 1480 aa24.5■■□□□ 1.51
TMED1-202ENST00000586835 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.5
TMED1-202ENST00000586835 FANCD2Q9BXW9 1451 aa24.37■■□□□ 1.49
TMED1-202ENST00000586835 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
TMED1-202ENST00000586835 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
TMED1-202ENST00000586835 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
TMED1-202ENST00000586835 WDR62O43379 1518 aa24.25■■□□□ 1.47
TMED1-202ENST00000586835 URB2Q14146 1524 aaKnown RBP24.14■■□□□ 1.45
TMED1-202ENST00000586835 TOPBP1Q92547 1522 aa23.98■■□□□ 1.43
TMED1-202ENST00000586835 ABCC8Q09428 1581 aa23.98■■□□□ 1.43
TMED1-202ENST00000586835 DNMBPQ6XZF7 1577 aa23.93■■□□□ 1.42
TMED1-202ENST00000586835 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
TMED1-202ENST00000586835 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
TMED1-202ENST00000586835 CUX1P39880 1505 aa23.76■■□□□ 1.39
TMED1-202ENST00000586835 ZNF608Q9ULD9 1512 aaPredicted RBP23.74■■□□□ 1.39
TMED1-202ENST00000586835 TRIM41Q8WV44 630 aa23.74■■□□□ 1.39
TMED1-202ENST00000586835 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
TMED1-202ENST00000586835 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
TMED1-202ENST00000586835 SOGA1O94964 1423 aa23.67■■□□□ 1.38
TMED1-202ENST00000586835 RAD54L2Q9Y4B4 1467 aa23.67■■□□□ 1.38
TMED1-202ENST00000586835 CHIC1Q5VXU3 224 aa23.64■■□□□ 1.37
TMED1-202ENST00000586835 EIF4G3O43432 1585 aaKnown RBP23.62■■□□□ 1.37
TMED1-202ENST00000586835 AQRO60306 1485 aaKnown RBP eCLIP23.61■■□□□ 1.37
TMED1-202ENST00000586835 WRNQ14191 1432 aaPredicted RBP eCLIP23.58■■□□□ 1.36
TMED1-202ENST00000586835 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
TMED1-202ENST00000586835 TOP2BQ02880 1626 aa23.52■■□□□ 1.36
TMED1-202ENST00000586835 OSCARQ8IYS5 282 aa23.52■■□□□ 1.36
TMED1-202ENST00000586835 WDR97A6NE52 1622 aa23.51■■□□□ 1.35
TMED1-202ENST00000586835 BIVM-ERCC5R4GMW8 1640 aa23.51■■□□□ 1.35
TMED1-202ENST00000586835 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
TMED1-202ENST00000586835 ABCA10Q8WWZ4 1543 aa23.47■■□□□ 1.35
TMED1-202ENST00000586835 GRIN2BQ13224 1484 aa23.4■■□□□ 1.34
TMED1-202ENST00000586835 GAPVD1Q14C86 1478 aa23.39■■□□□ 1.34
TMED1-202ENST00000586835 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
TMED1-202ENST00000586835 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
TMED1-202ENST00000586835 CHD1O14646 1710 aa23.35■■□□□ 1.33
TMED1-202ENST00000586835 MAGI1Q96QZ7 1491 aaPredicted RBP23.35■■□□□ 1.33
TMED1-202ENST00000586835 FBLN2P98095 1184 aa23.34■■□□□ 1.33
TMED1-202ENST00000586835 PBRM1Q86U86 1689 aa23.32■■□□□ 1.32
TMED1-202ENST00000586835 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.32
TMED1-202ENST00000586835 SYNJ2O15056 1496 aa23.26■■□□□ 1.31
TMED1-202ENST00000586835 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
TMED1-202ENST00000586835 ADAMTS12P58397 1594 aa23.14■■□□□ 1.3
TMED1-202ENST00000586835 FHAD1B1AJZ9 1412 aa23.12■■□□□ 1.29
TMED1-202ENST00000586835 RIMBP3CA6NJZ7 1639 aa23.11■■□□□ 1.29
TMED1-202ENST00000586835 RIMBP3BA6NNM3 1639 aa23.11■■□□□ 1.29
TMED1-202ENST00000586835 RIMBP3Q9UFD9 1639 aa23.11■■□□□ 1.29
TMED1-202ENST00000586835 ARHGEF11O15085 1522 aa23.11■■□□□ 1.29
TMED1-202ENST00000586835 CLASP1Q7Z460 1538 aa23.11■■□□□ 1.29
TMED1-202ENST00000586835 GRIN2AQ12879 1464 aa23.1■■□□□ 1.29
TMED1-202ENST00000586835 KIF27Q86VH2 1401 aa23.09■■□□□ 1.29
TMED1-202ENST00000586835 EEA1Q15075 1411 aa23.08■■□□□ 1.28
TMED1-202ENST00000586835 IGF1RP08069 1367 aa23.03■■□□□ 1.28
TMED1-202ENST00000586835 NUP160Q12769 1436 aa23.01■■□□□ 1.27
TMED1-202ENST00000586835 CEP170Q5SW79 1584 aa22.98■■□□□ 1.27
TMED1-202ENST00000586835 CUL7Q14999 1698 aa22.93■■□□□ 1.26
TMED1-202ENST00000586835 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
TMED1-202ENST00000586835 CYB5RLQ6IPT4 315 aa22.92■■□□□ 1.26
TMED1-202ENST00000586835 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.25
TMED1-202ENST00000586835 RUSC2Q8N2Y8 1516 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms