RNA–Protein interactions for RNA: ENST00000586538.1

ACTN4-209, Transcript of actinin alpha 4, humanhuman

TSL 5

Gene ACTN4, Length 546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-209ENST00000586538 NISCHQ9Y2I1 1504 aa27.77■■■□□ 2.04
ACTN4-209ENST00000586538 CCDC180Q9P1Z9 1646 aa24.94■■□□□ 1.58
ACTN4-209ENST00000586538 ABCC9O60706 1549 aa24.6■■□□□ 1.53
ACTN4-209ENST00000586538 RB1CC1Q8TDY2 1594 aa23.64■■□□□ 1.37
ACTN4-209ENST00000586538 NACADO15069 1562 aa23.52■■□□□ 1.36
ACTN4-209ENST00000586538 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
ACTN4-209ENST00000586538 MYO15BQ96JP2 1530 aa23.29■■□□□ 1.32
ACTN4-209ENST00000586538 ZCCHC6Q5VYS8 1495 aaKnown RBP23.07■■□□□ 1.28
ACTN4-209ENST00000586538 DCAF1Q9Y4B6 1507 aa23.03■■□□□ 1.28
ACTN4-209ENST00000586538 UNC13AQ9UPW8 1703 aa22.98■■□□□ 1.27
ACTN4-209ENST00000586538 PABPN1Q86U42 306 aaKnown RBP eCLIP22.86■■□□□ 1.25
ACTN4-209ENST00000586538 BICRAQ9NZM4 1560 aa22.79■■□□□ 1.24
ACTN4-209ENST00000586538 SHROOM4Q9ULL8 1493 aa22.75■■□□□ 1.23
ACTN4-209ENST00000586538 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
ACTN4-209ENST00000586538 SCRIBQ14160 1630 aa22.61■■□□□ 1.21
ACTN4-209ENST00000586538 EIF4G1Q04637 1599 aaKnown RBP22.29■■□□□ 1.16
ACTN4-209ENST00000586538 CC2D2AQ9P2K1 1620 aa22.27■■□□□ 1.16
ACTN4-209ENST00000586538 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
ACTN4-209ENST00000586538 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
ACTN4-209ENST00000586538 SMARCA4P51532 1647 aa21.63■■□□□ 1.05
ACTN4-209ENST00000586538 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
ACTN4-209ENST00000586538 BAZ1AQ9NRL2 1556 aaPredicted RBP21.61■■□□□ 1.05
ACTN4-209ENST00000586538 ATAD2BQ9ULI0 1458 aa21.58■■□□□ 1.05
ACTN4-209ENST00000586538 HMGXB3Q12766 1538 aa21.57■■□□□ 1.04
ACTN4-209ENST00000586538 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
ACTN4-209ENST00000586538 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
ACTN4-209ENST00000586538 ERCC6Q03468 1493 aa21.33■■□□□ 1.01
ACTN4-209ENST00000586538 MROH2BQ7Z745 1585 aa21.33■■□□□ 1.01
ACTN4-209ENST00000586538 CUX2O14529 1486 aa21.26■□□□□ 0.99
ACTN4-209ENST00000586538 LAMC3Q9Y6N6 1575 aa21.19■□□□□ 0.98
ACTN4-209ENST00000586538 NESP48681 1621 aa21.13■□□□□ 0.97
ACTN4-209ENST00000586538 WIZO95785 1651 aa21.09■□□□□ 0.97
ACTN4-209ENST00000586538 PDS5BQ9NTI5 1447 aa21.07■□□□□ 0.96
ACTN4-209ENST00000586538 CADPSQ9ULU8 1353 aa21■□□□□ 0.95
ACTN4-209ENST00000586538 THOC2Q8NI27 1593 aaKnown RBP20.98■□□□□ 0.95
ACTN4-209ENST00000586538 RSF1Q96T23 1441 aaPredicted RBP20.98■□□□□ 0.95
ACTN4-209ENST00000586538 KIF21AQ7Z4S6 1674 aa20.94■□□□□ 0.94
ACTN4-209ENST00000586538 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
ACTN4-209ENST00000586538 DNAJC5Q9H3Z4 198 aa20.9■□□□□ 0.94
ACTN4-209ENST00000586538 MRC2Q9UBG0 1479 aa20.83■□□□□ 0.93
ACTN4-209ENST00000586538 CFTRP13569 1480 aa20.81■□□□□ 0.92
ACTN4-209ENST00000586538 CEP164Q9UPV0 1460 aa20.81■□□□□ 0.92
ACTN4-209ENST00000586538 WDR62O43379 1518 aa20.78■□□□□ 0.92
ACTN4-209ENST00000586538 FANCD2Q9BXW9 1451 aa20.76■□□□□ 0.91
ACTN4-209ENST00000586538 PRDM2Q13029 1718 aa20.68■□□□□ 0.9
ACTN4-209ENST00000586538 CCDC88BA6NC98 1476 aa20.62■□□□□ 0.89
ACTN4-209ENST00000586538 URB2Q14146 1524 aaKnown RBP20.52■□□□□ 0.87
ACTN4-209ENST00000586538 ABCC8Q09428 1581 aa20.47■□□□□ 0.87
ACTN4-209ENST00000586538 IFT140Q96RY7 1462 aa20.39■□□□□ 0.85
ACTN4-209ENST00000586538 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
ACTN4-209ENST00000586538 DNMBPQ6XZF7 1577 aa20.36■□□□□ 0.85
ACTN4-209ENST00000586538 OSCARQ8IYS5 282 aa20.26■□□□□ 0.83
ACTN4-209ENST00000586538 ZNF608Q9ULD9 1512 aaPredicted RBP20.21■□□□□ 0.83
ACTN4-209ENST00000586538 EIF4G3O43432 1585 aaKnown RBP20.2■□□□□ 0.82
ACTN4-209ENST00000586538 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
ACTN4-209ENST00000586538 TARBP1Q13395 1621 aaKnown RBP20.16■□□□□ 0.82
ACTN4-209ENST00000586538 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
ACTN4-209ENST00000586538 WDR97A6NE52 1622 aa20.14■□□□□ 0.81
ACTN4-209ENST00000586538 SOGA1O94964 1423 aa20.1■□□□□ 0.81
ACTN4-209ENST00000586538 FGD5Q6ZNL6 1462 aa20.07■□□□□ 0.8
ACTN4-209ENST00000586538 AQRO60306 1485 aaKnown RBP eCLIP20.06■□□□□ 0.82e-11■■■■■ 52.4
ACTN4-209ENST00000586538 TRIM41Q8WV44 630 aa20.05■□□□□ 0.8
ACTN4-209ENST00000586538 CUX1P39880 1505 aa20.05■□□□□ 0.8
ACTN4-209ENST00000586538 RAD54L2Q9Y4B4 1467 aa20.03■□□□□ 0.8
ACTN4-209ENST00000586538 CHD1O14646 1710 aa19.99■□□□□ 0.79
ACTN4-209ENST00000586538 TDRD9Q8NDG6 1382 aaKnown RBP19.97■□□□□ 0.79
ACTN4-209ENST00000586538 MAGI1Q96QZ7 1491 aaPredicted RBP19.95■□□□□ 0.78
ACTN4-209ENST00000586538 GRIN2BQ13224 1484 aa19.94■□□□□ 0.78
ACTN4-209ENST00000586538 FBLN2P98095 1184 aa19.94■□□□□ 0.78
ACTN4-209ENST00000586538 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
ACTN4-209ENST00000586538 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
ACTN4-209ENST00000586538 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
ACTN4-209ENST00000586538 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
ACTN4-209ENST00000586538 ARHGEF11O15085 1522 aa19.92■□□□□ 0.78
ACTN4-209ENST00000586538 ABCA10Q8WWZ4 1543 aa19.9■□□□□ 0.78
ACTN4-209ENST00000586538 WRNQ14191 1432 aaPredicted RBP eCLIP19.88■□□□□ 0.77
ACTN4-209ENST00000586538 GAPVD1Q14C86 1478 aa19.87■□□□□ 0.77
ACTN4-209ENST00000586538 CHMP7Q8WUX9 453 aaPredicted RBP19.87■□□□□ 0.77
ACTN4-209ENST00000586538 SYNJ1O43426 1573 aa19.87■□□□□ 0.77
ACTN4-209ENST00000586538 PBRM1Q86U86 1689 aa19.86■□□□□ 0.77
ACTN4-209ENST00000586538 BIVM-ERCC5R4GMW8 1640 aa19.86■□□□□ 0.77
ACTN4-209ENST00000586538 SYNJ2O15056 1496 aa19.86■□□□□ 0.77
ACTN4-209ENST00000586538 TOP2BQ02880 1626 aa19.85■□□□□ 0.77
ACTN4-209ENST00000586538 ABCA5Q8WWZ7 1642 aa19.84■□□□□ 0.77
ACTN4-209ENST00000586538 CLASP1Q7Z460 1538 aa19.76■□□□□ 0.75
ACTN4-209ENST00000586538 CYB5RLQ6IPT4 315 aa19.71■□□□□ 0.75
ACTN4-209ENST00000586538 ARAP1Q96P48 1450 aa19.69■□□□□ 0.74
ACTN4-209ENST00000586538 ERICH3Q5RHP9 1530 aa19.69■□□□□ 0.74
ACTN4-209ENST00000586538 ADAMTS12P58397 1594 aa19.68■□□□□ 0.74
ACTN4-209ENST00000586538 GRIN2AQ12879 1464 aa19.67■□□□□ 0.74
ACTN4-209ENST00000586538 FHAD1B1AJZ9 1412 aa19.66■□□□□ 0.74
ACTN4-209ENST00000586538 NUP160Q12769 1436 aa19.58■□□□□ 0.72
ACTN4-209ENST00000586538 CEP170Q5SW79 1584 aa19.53■□□□□ 0.72
ACTN4-209ENST00000586538 KIF27Q86VH2 1401 aa19.51■□□□□ 0.71
ACTN4-209ENST00000586538 TRHP20396 242 aaPredicted RBP19.48■□□□□ 0.71
ACTN4-209ENST00000586538 SHROOM2Q13796 1616 aa19.47■□□□□ 0.71
ACTN4-209ENST00000586538 CUL7Q14999 1698 aa19.46■□□□□ 0.71
ACTN4-209ENST00000586538 RUSC2Q8N2Y8 1516 aa19.4■□□□□ 0.7
ACTN4-209ENST00000586538 IGF1RP08069 1367 aa19.37■□□□□ 0.69
ACTN4-209ENST00000586538 ERCC6L2Q5T890 1561 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms