RNA–Protein interactions for RNA: ENST00000585388.1

LSM12-202, Transcript of LSM12 homolog, humanhuman

TSL 3 BASIC

Gene LSM12, Length 942 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM12-202ENST00000585388 NISCHQ9Y2I1 1504 aa41.03■■■■■ 4.16
LSM12-202ENST00000585388 CCDC180Q9P1Z9 1646 aa36.89■■■■□ 3.5
LSM12-202ENST00000585388 ABCC9O60706 1549 aa36.66■■■■□ 3.46
LSM12-202ENST00000585388 RB1CC1Q8TDY2 1594 aa35.04■■■■□ 3.2
LSM12-202ENST00000585388 NACADO15069 1562 aa34.8■■■■□ 3.16
LSM12-202ENST00000585388 DCAF8L2P0C7V8 631 aa34.45■■■■□ 3.11
LSM12-202ENST00000585388 MYO15BQ96JP2 1530 aa34.37■■■■□ 3.09
LSM12-202ENST00000585388 UNC13AQ9UPW8 1703 aa34.24■■■■□ 3.07
LSM12-202ENST00000585388 DNAJC5BQ9UF47 199 aa34.19■■■■□ 3.06
LSM12-202ENST00000585388 PABPN1Q86U42 306 aaKnown RBP eCLIP34.06■■■■□ 3.04
LSM12-202ENST00000585388 ZCCHC6Q5VYS8 1495 aaKnown RBP34.04■■■■□ 3.04
LSM12-202ENST00000585388 BICRAQ9NZM4 1560 aa33.95■■■■□ 3.03
LSM12-202ENST00000585388 DCAF1Q9Y4B6 1507 aa33.94■■■■□ 3.02
LSM12-202ENST00000585388 SHROOM4Q9ULL8 1493 aa33.63■■■□□ 2.97
LSM12-202ENST00000585388 SCRIBQ14160 1630 aa33.53■■■□□ 2.96
LSM12-202ENST00000585388 CC2D2AQ9P2K1 1620 aa33.17■■■□□ 2.9
LSM12-202ENST00000585388 EIF4G1Q04637 1599 aaKnown RBP33.13■■■□□ 2.89
LSM12-202ENST00000585388 CECR2Q9BXF3 1484 aa33.05■■■□□ 2.88
LSM12-202ENST00000585388 NCAPD3P42695 1498 aa32.08■■■□□ 2.73
LSM12-202ENST00000585388 SMARCA4P51532 1647 aa32.02■■■□□ 2.72
LSM12-202ENST00000585388 ATAD2BQ9ULI0 1458 aa31.97■■■□□ 2.71
LSM12-202ENST00000585388 SMARCA2P51531 1590 aa31.97■■■□□ 2.71
LSM12-202ENST00000585388 HMGXB3Q12766 1538 aa31.92■■■□□ 2.7
LSM12-202ENST00000585388 BAZ1AQ9NRL2 1556 aaPredicted RBP31.89■■■□□ 2.7
LSM12-202ENST00000585388 PEG3Q9GZU2 1588 aa31.73■■■□□ 2.67
LSM12-202ENST00000585388 BAZ1BQ9UIG0 1483 aaKnown RBP31.72■■■□□ 2.67
LSM12-202ENST00000585388 ERCC6Q03468 1493 aa31.71■■■□□ 2.67
LSM12-202ENST00000585388 CUX2O14529 1486 aa31.65■■■□□ 2.66
LSM12-202ENST00000585388 MROH2BQ7Z745 1585 aa31.58■■■□□ 2.65
LSM12-202ENST00000585388 NESP48681 1621 aa31.5■■■□□ 2.63
LSM12-202ENST00000585388 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
LSM12-202ENST00000585388 LAMC3Q9Y6N6 1575 aa31.41■■■□□ 2.62
LSM12-202ENST00000585388 THOC2Q8NI27 1593 aaKnown RBP31.26■■■□□ 2.6
LSM12-202ENST00000585388 WIZO95785 1651 aa31.22■■■□□ 2.59
LSM12-202ENST00000585388 KIF21AQ7Z4S6 1674 aa31.19■■■□□ 2.58
LSM12-202ENST00000585388 PDS5BQ9NTI5 1447 aa31.18■■■□□ 2.58
LSM12-202ENST00000585388 CADPSQ9ULU8 1353 aa31.08■■■□□ 2.57
LSM12-202ENST00000585388 RSF1Q96T23 1441 aaPredicted RBP30.94■■■□□ 2.54
LSM12-202ENST00000585388 MRC2Q9UBG0 1479 aa30.92■■■□□ 2.54
LSM12-202ENST00000585388 TOP2AP11388 1531 aaKnown RBP30.88■■■□□ 2.53
LSM12-202ENST00000585388 WDR62O43379 1518 aa30.85■■■□□ 2.53
LSM12-202ENST00000585388 CEP164Q9UPV0 1460 aa30.82■■■□□ 2.53
LSM12-202ENST00000585388 CFTRP13569 1480 aa30.77■■■□□ 2.52
LSM12-202ENST00000585388 FANCD2Q9BXW9 1451 aa30.76■■■□□ 2.51
LSM12-202ENST00000585388 PRDM2Q13029 1718 aa30.6■■■□□ 2.49
LSM12-202ENST00000585388 URB2Q14146 1524 aaKnown RBP30.48■■■□□ 2.47
LSM12-202ENST00000585388 CCDC88BA6NC98 1476 aa30.45■■■□□ 2.47
LSM12-202ENST00000585388 IFT140Q96RY7 1462 aa30.19■■■□□ 2.42
LSM12-202ENST00000585388 TOPBP1Q92547 1522 aa30.18■■■□□ 2.42
LSM12-202ENST00000585388 ABCC8Q09428 1581 aa30.18■■■□□ 2.42
LSM12-202ENST00000585388 DNMBPQ6XZF7 1577 aa30.13■■■□□ 2.41
LSM12-202ENST00000585388 OSCARQ8IYS5 282 aa30.12■■■□□ 2.41
LSM12-202ENST00000585388 ZNF608Q9ULD9 1512 aaPredicted RBP30.06■■■□□ 2.4
LSM12-202ENST00000585388 TRIM41Q8WV44 630 aa30.06■■■□□ 2.4
LSM12-202ENST00000585388 EIF4G3O43432 1585 aaKnown RBP30■■■□□ 2.39
LSM12-202ENST00000585388 TARBP1Q13395 1621 aaKnown RBP29.93■■■□□ 2.38
LSM12-202ENST00000585388 POLA1P09884 1462 aaPredicted RBP29.88■■■□□ 2.37
LSM12-202ENST00000585388 RIMBP3CA6NJZ7 1639 aa29.79■■■□□ 2.36
LSM12-202ENST00000585388 RIMBP3BA6NNM3 1639 aa29.79■■■□□ 2.36
LSM12-202ENST00000585388 RIMBP3Q9UFD9 1639 aa29.79■■■□□ 2.36
LSM12-202ENST00000585388 AQRO60306 1485 aaKnown RBP eCLIP29.79■■■□□ 2.363e-7■■■■□ 24
LSM12-202ENST00000585388 CHD1O14646 1710 aa29.76■■■□□ 2.36
LSM12-202ENST00000585388 WDR97A6NE52 1622 aa29.73■■■□□ 2.35
LSM12-202ENST00000585388 SOGA1O94964 1423 aa29.71■■■□□ 2.35
LSM12-202ENST00000585388 FGD5Q6ZNL6 1462 aa29.71■■■□□ 2.35
LSM12-202ENST00000585388 RAD54L2Q9Y4B4 1467 aa29.71■■■□□ 2.35
LSM12-202ENST00000585388 ARHGEF11O15085 1522 aa29.7■■■□□ 2.34
LSM12-202ENST00000585388 CUX1P39880 1505 aa29.68■■■□□ 2.34
LSM12-202ENST00000585388 TDRD9Q8NDG6 1382 aaKnown RBP29.61■■■□□ 2.33
LSM12-202ENST00000585388 FBLN2P98095 1184 aa29.56■■■□□ 2.32
LSM12-202ENST00000585388 SNAPC4Q5SXM2 1469 aa29.55■■■□□ 2.32
LSM12-202ENST00000585388 SUPT5HO00267 1087 aaKnown RBP29.55■■■□□ 2.32
LSM12-202ENST00000585388 MAGI1Q96QZ7 1491 aaPredicted RBP29.52■■■□□ 2.32
LSM12-202ENST00000585388 GRIN2BQ13224 1484 aa29.49■■■□□ 2.31
LSM12-202ENST00000585388 PBRM1Q86U86 1689 aa29.44■■■□□ 2.3
LSM12-202ENST00000585388 SYNJ1O43426 1573 aa29.43■■■□□ 2.3
LSM12-202ENST00000585388 CLASP1Q7Z460 1538 aa29.4■■■□□ 2.3
LSM12-202ENST00000585388 SYNJ2O15056 1496 aa29.4■■■□□ 2.3
LSM12-202ENST00000585388 ARAP1Q96P48 1450 aa29.4■■■□□ 2.3
LSM12-202ENST00000585388 CHMP7Q8WUX9 453 aaPredicted RBP29.39■■■□□ 2.3
LSM12-202ENST00000585388 ABCA10Q8WWZ4 1543 aa29.39■■■□□ 2.3
LSM12-202ENST00000585388 GAPVD1Q14C86 1478 aa29.38■■■□□ 2.29
LSM12-202ENST00000585388 CYB5RLQ6IPT4 315 aa29.37■■■□□ 2.29
LSM12-202ENST00000585388 ABCA5Q8WWZ7 1642 aa29.37■■■□□ 2.29
LSM12-202ENST00000585388 BIVM-ERCC5R4GMW8 1640 aa29.3■■■□□ 2.28
LSM12-202ENST00000585388 TOP2BQ02880 1626 aa29.28■■■□□ 2.28
LSM12-202ENST00000585388 WRNQ14191 1432 aaPredicted RBP eCLIP29.28■■■□□ 2.28
LSM12-202ENST00000585388 ADAMTS12P58397 1594 aa29.15■■■□□ 2.26
LSM12-202ENST00000585388 GRIN2AQ12879 1464 aa29.12■■■□□ 2.25
LSM12-202ENST00000585388 TRHP20396 242 aaPredicted RBP29.05■■■□□ 2.24
LSM12-202ENST00000585388 ERICH3Q5RHP9 1530 aa29.04■■■□□ 2.24
LSM12-202ENST00000585388 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
LSM12-202ENST00000585388 CEP170Q5SW79 1584 aa29.01■■■□□ 2.24
LSM12-202ENST00000585388 NUP160Q12769 1436 aa29.01■■■□□ 2.23
LSM12-202ENST00000585388 SHROOM2Q13796 1616 aa28.91■■■□□ 2.22
LSM12-202ENST00000585388 ERCC6L2Q5T890 1561 aa28.88■■■□□ 2.21
LSM12-202ENST00000585388 RUSC2Q8N2Y8 1516 aa28.75■■■□□ 2.19
LSM12-202ENST00000585388 PRG4Q92954 1404 aaPredicted RBP28.69■■■□□ 2.18
LSM12-202ENST00000585388 CUL7Q14999 1698 aa28.69■■■□□ 2.18
LSM12-202ENST00000585388 KIF27Q86VH2 1401 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms