RNA–Protein interactions for RNA: ENST00000584042.1

CDK5RAP3-230, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 3

Gene CDK5RAP3, Length 638 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-230ENST00000584042 NISCHQ9Y2I1 1504 aa39.35■■■■□ 3.89
CDK5RAP3-230ENST00000584042 CCDC180Q9P1Z9 1646 aa34.77■■■■□ 3.16
CDK5RAP3-230ENST00000584042 ABCC9O60706 1549 aa33.05■■■□□ 2.88
CDK5RAP3-230ENST00000584042 ZCCHC6Q5VYS8 1495 aaKnown RBP33.01■■■□□ 2.88
CDK5RAP3-230ENST00000584042 DCAF1Q9Y4B6 1507 aa32.67■■■□□ 2.82
CDK5RAP3-230ENST00000584042 MYO15BQ96JP2 1530 aa32.52■■■□□ 2.8
CDK5RAP3-230ENST00000584042 NACADO15069 1562 aa32.41■■■□□ 2.78
CDK5RAP3-230ENST00000584042 DCAF8L2P0C7V8 631 aa32.27■■■□□ 2.76
CDK5RAP3-230ENST00000584042 RB1CC1Q8TDY2 1594 aa32.25■■■□□ 2.75
CDK5RAP3-230ENST00000584042 SCRIBQ14160 1630 aa31.68■■■□□ 2.66
CDK5RAP3-230ENST00000584042 UNC13AQ9UPW8 1703 aa31.58■■■□□ 2.65
CDK5RAP3-230ENST00000584042 SHROOM4Q9ULL8 1493 aa31.42■■■□□ 2.62
CDK5RAP3-230ENST00000584042 BICRAQ9NZM4 1560 aa31.24■■■□□ 2.59
CDK5RAP3-230ENST00000584042 PABPN1Q86U42 306 aaKnown RBP eCLIP30.9■■■□□ 2.54
CDK5RAP3-230ENST00000584042 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
CDK5RAP3-230ENST00000584042 BAZ1AQ9NRL2 1556 aaPredicted RBP30.49■■■□□ 2.47
CDK5RAP3-230ENST00000584042 SMARCA4P51532 1647 aa30.42■■■□□ 2.46
CDK5RAP3-230ENST00000584042 EIF4G1Q04637 1599 aaKnown RBP30.35■■■□□ 2.45
CDK5RAP3-230ENST00000584042 MROH2BQ7Z745 1585 aa30.32■■■□□ 2.44
CDK5RAP3-230ENST00000584042 RSF1Q96T23 1441 aaPredicted RBP30.23■■■□□ 2.43
CDK5RAP3-230ENST00000584042 PEG3Q9GZU2 1588 aa30.14■■■□□ 2.42
CDK5RAP3-230ENST00000584042 WIZO95785 1651 aa30.05■■■□□ 2.4
CDK5RAP3-230ENST00000584042 SMARCA2P51531 1590 aa30.04■■■□□ 2.4
CDK5RAP3-230ENST00000584042 CC2D2AQ9P2K1 1620 aa30.01■■■□□ 2.39
CDK5RAP3-230ENST00000584042 ATAD2BQ9ULI0 1458 aa29.99■■■□□ 2.39
CDK5RAP3-230ENST00000584042 SUPT5HO00267 1087 aaKnown RBP29.91■■■□□ 2.38
CDK5RAP3-230ENST00000584042 HMGXB3Q12766 1538 aa29.87■■■□□ 2.37
CDK5RAP3-230ENST00000584042 NCAPD3P42695 1498 aa29.84■■■□□ 2.37
CDK5RAP3-230ENST00000584042 TOP2AP11388 1531 aaKnown RBP29.84■■■□□ 2.37
CDK5RAP3-230ENST00000584042 BAZ1BQ9UIG0 1483 aaKnown RBP29.8■■■□□ 2.36
CDK5RAP3-230ENST00000584042 DNAJC5BQ9UF47 199 aa29.47■■■□□ 2.31
CDK5RAP3-230ENST00000584042 CCDC88BA6NC98 1476 aa29.38■■■□□ 2.29
CDK5RAP3-230ENST00000584042 CFTRP13569 1480 aa29.03■■■□□ 2.24
CDK5RAP3-230ENST00000584042 PRDM2Q13029 1718 aa29.03■■■□□ 2.24
CDK5RAP3-230ENST00000584042 LAMC3Q9Y6N6 1575 aa29■■■□□ 2.23
CDK5RAP3-230ENST00000584042 CADPSQ9ULU8 1353 aa28.98■■■□□ 2.23
CDK5RAP3-230ENST00000584042 NESP48681 1621 aa28.84■■■□□ 2.21
CDK5RAP3-230ENST00000584042 PDS5BQ9NTI5 1447 aa28.69■■■□□ 2.18
CDK5RAP3-230ENST00000584042 FANCD2Q9BXW9 1451 aa28.68■■■□□ 2.18
CDK5RAP3-230ENST00000584042 KIF21AQ7Z4S6 1674 aa28.63■■■□□ 2.17
CDK5RAP3-230ENST00000584042 CEP164Q9UPV0 1460 aa28.6■■■□□ 2.17
CDK5RAP3-230ENST00000584042 ABCC8Q09428 1581 aa28.58■■■□□ 2.17
CDK5RAP3-230ENST00000584042 WRNQ14191 1432 aaPredicted RBP eCLIP28.51■■■□□ 2.15
CDK5RAP3-230ENST00000584042 BIVM-ERCC5R4GMW8 1640 aa28.46■■■□□ 2.15
CDK5RAP3-230ENST00000584042 ERCC6Q03468 1493 aa28.45■■■□□ 2.14
CDK5RAP3-230ENST00000584042 SYNJ1O43426 1573 aa28.45■■■□□ 2.14
CDK5RAP3-230ENST00000584042 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
CDK5RAP3-230ENST00000584042 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
CDK5RAP3-230ENST00000584042 CUX1P39880 1505 aa28.43■■■□□ 2.14
CDK5RAP3-230ENST00000584042 DNMBPQ6XZF7 1577 aa28.42■■■□□ 2.14
CDK5RAP3-230ENST00000584042 MRC2Q9UBG0 1479 aa28.4■■■□□ 2.14
CDK5RAP3-230ENST00000584042 THOC2Q8NI27 1593 aaKnown RBP28.37■■■□□ 2.13
CDK5RAP3-230ENST00000584042 URB2Q14146 1524 aaKnown RBP28.36■■■□□ 2.13
CDK5RAP3-230ENST00000584042 TOPBP1Q92547 1522 aa28.33■■■□□ 2.13
CDK5RAP3-230ENST00000584042 WDR62O43379 1518 aa28.33■■■□□ 2.13
CDK5RAP3-230ENST00000584042 TRIM41Q8WV44 630 aa28.25■■■□□ 2.11
CDK5RAP3-230ENST00000584042 FGD5Q6ZNL6 1462 aa28.19■■■□□ 2.1
CDK5RAP3-230ENST00000584042 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
CDK5RAP3-230ENST00000584042 WDR97A6NE52 1622 aa28.05■■■□□ 2.08
CDK5RAP3-230ENST00000584042 CUX2O14529 1486 aa28■■■□□ 2.07
CDK5RAP3-230ENST00000584042 TARBP1Q13395 1621 aaKnown RBP28■■■□□ 2.07
CDK5RAP3-230ENST00000584042 ABCA10Q8WWZ4 1543 aa27.98■■■□□ 2.07
CDK5RAP3-230ENST00000584042 SOGA1O94964 1423 aa27.96■■■□□ 2.07
CDK5RAP3-230ENST00000584042 IFT140Q96RY7 1462 aa27.95■■■□□ 2.07
CDK5RAP3-230ENST00000584042 RAD54L2Q9Y4B4 1467 aa27.95■■■□□ 2.07
CDK5RAP3-230ENST00000584042 EEA1Q15075 1411 aa27.9■■■□□ 2.06
CDK5RAP3-230ENST00000584042 ABCA5Q8WWZ7 1642 aa27.86■■■□□ 2.05
CDK5RAP3-230ENST00000584042 KIF27Q86VH2 1401 aa27.84■■■□□ 2.05
CDK5RAP3-230ENST00000584042 RUSC2Q8N2Y8 1516 aa27.77■■■□□ 2.04
CDK5RAP3-230ENST00000584042 EIF4G3O43432 1585 aaKnown RBP27.75■■■□□ 2.03
CDK5RAP3-230ENST00000584042 ZNF608Q9ULD9 1512 aaPredicted RBP27.72■■■□□ 2.03
CDK5RAP3-230ENST00000584042 GAPVD1Q14C86 1478 aa27.71■■■□□ 2.03
CDK5RAP3-230ENST00000584042 PBRM1Q86U86 1689 aa27.71■■■□□ 2.03
CDK5RAP3-230ENST00000584042 ERICH3Q5RHP9 1530 aa27.68■■■□□ 2.02
CDK5RAP3-230ENST00000584042 TDRD9Q8NDG6 1382 aaKnown RBP27.67■■■□□ 2.02
CDK5RAP3-230ENST00000584042 CUL7Q14999 1698 aa27.63■■■□□ 2.01
CDK5RAP3-230ENST00000584042 AQRO60306 1485 aaKnown RBP eCLIP27.62■■■□□ 2.019e-9■■■□□ 18
CDK5RAP3-230ENST00000584042 GRIN2BQ13224 1484 aa27.61■■■□□ 2.01
CDK5RAP3-230ENST00000584042 KIF21BO75037 1637 aa27.59■■■□□ 2.01
CDK5RAP3-230ENST00000584042 FAM9AQ8IZU1 332 aaPredicted RBP27.58■■■□□ 2.01
CDK5RAP3-230ENST00000584042 CSRNP3Q8WYN3 585 aa27.57■■■□□ 2
CDK5RAP3-230ENST00000584042 IGF1RP08069 1367 aa27.56■■■□□ 2
CDK5RAP3-230ENST00000584042 ADAMTS12P58397 1594 aa27.54■■■□□ 2
CDK5RAP3-230ENST00000584042 PRXQ9BXM0 1461 aa27.54■■■□□ 2
CDK5RAP3-230ENST00000584042 MAGI1Q96QZ7 1491 aaPredicted RBP27.5■■□□□ 1.99
CDK5RAP3-230ENST00000584042 SNAPC4Q5SXM2 1469 aa27.47■■□□□ 1.99
CDK5RAP3-230ENST00000584042 GOLGA3Q08378 1498 aa27.44■■□□□ 1.98
CDK5RAP3-230ENST00000584042 CARMIL1Q5VZK9 1371 aa27.43■■□□□ 1.98
CDK5RAP3-230ENST00000584042 FHAD1B1AJZ9 1412 aa27.42■■□□□ 1.98
CDK5RAP3-230ENST00000584042 RAPGEF2Q9Y4G8 1499 aa27.42■■□□□ 1.98
CDK5RAP3-230ENST00000584042 SYNJ2O15056 1496 aa27.35■■□□□ 1.97
CDK5RAP3-230ENST00000584042 GRIN2AQ12879 1464 aa27.28■■□□□ 1.96
CDK5RAP3-230ENST00000584042 CHD1O14646 1710 aa27.24■■□□□ 1.95
CDK5RAP3-230ENST00000584042 CTTNBP2Q8WZ74 1663 aa27.24■■□□□ 1.95
CDK5RAP3-230ENST00000584042 TNIKQ9UKE5 1360 aa27.18■■□□□ 1.94
CDK5RAP3-230ENST00000584042 LOC105371045A0A1W2PR82 267 aa27.17■■□□□ 1.94
CDK5RAP3-230ENST00000584042 NUP160Q12769 1436 aa27.13■■□□□ 1.93
CDK5RAP3-230ENST00000584042 CHMP7Q8WUX9 453 aaPredicted RBP27.12■■□□□ 1.93
CDK5RAP3-230ENST00000584042 CEP170Q5SW79 1584 aa27.12■■□□□ 1.93
CDK5RAP3-230ENST00000584042 EHMT2Q96KQ7 1210 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms