RNA–Protein interactions for RNA: ENST00000583805.1

CRLF3-205, Transcript of cytokine receptor like factor 3, humanhuman

TSL 4

Gene CRLF3, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-205ENST00000583805 NISCHQ9Y2I1 1504 aa21.76■■□□□ 1.07
CRLF3-205ENST00000583805 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
CRLF3-205ENST00000583805 AEBP2Q6ZN18 517 aaPredicted RBP21.13■□□□□ 0.97
CRLF3-205ENST00000583805 CCDC180Q9P1Z9 1646 aa19.71■□□□□ 0.75
CRLF3-205ENST00000583805 ABCC9O60706 1549 aa19.35■□□□□ 0.69
CRLF3-205ENST00000583805 PHF23Q9BUL5 403 aaPredicted RBP18.99■□□□□ 0.63
CRLF3-205ENST00000583805 RB1CC1Q8TDY2 1594 aa18.63■□□□□ 0.57
CRLF3-205ENST00000583805 NACADO15069 1562 aa18.51■□□□□ 0.55
CRLF3-205ENST00000583805 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
CRLF3-205ENST00000583805 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
CRLF3-205ENST00000583805 DCAF8L2P0C7V8 631 aa18.12■□□□□ 0.49
CRLF3-205ENST00000583805 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
CRLF3-205ENST00000583805 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
CRLF3-205ENST00000583805 PLPPR3Q6T4P5 718 aa18.02■□□□□ 0.48
CRLF3-205ENST00000583805 BICRAQ9NZM4 1560 aa18.01■□□□□ 0.47
CRLF3-205ENST00000583805 SENP3Q9H4L4 574 aaPredicted RBP17.99■□□□□ 0.47
CRLF3-205ENST00000583805 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
CRLF3-205ENST00000583805 SHROOM4Q9ULL8 1493 aa17.91■□□□□ 0.46
CRLF3-205ENST00000583805 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
CRLF3-205ENST00000583805 SCRIBQ14160 1630 aa17.79■□□□□ 0.44
CRLF3-205ENST00000583805 CC2D2AQ9P2K1 1620 aa17.61■□□□□ 0.41
CRLF3-205ENST00000583805 EIF4G1Q04637 1599 aaKnown RBP17.59■□□□□ 0.41
CRLF3-205ENST00000583805 CECR2Q9BXF3 1484 aa17.47■□□□□ 0.39
CRLF3-205ENST00000583805 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
CRLF3-205ENST00000583805 SMARCA2P51531 1590 aa17■□□□□ 0.31
CRLF3-205ENST00000583805 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
CRLF3-205ENST00000583805 HMGXB3Q12766 1538 aa16.98■□□□□ 0.31
CRLF3-205ENST00000583805 BAZ1AQ9NRL2 1556 aaPredicted RBP16.95■□□□□ 0.3
CRLF3-205ENST00000583805 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
CRLF3-205ENST00000583805 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.3
CRLF3-205ENST00000583805 BAZ1BQ9UIG0 1483 aaKnown RBP16.81■□□□□ 0.28
CRLF3-205ENST00000583805 CUX2O14529 1486 aa16.8■□□□□ 0.28
CRLF3-205ENST00000583805 ERCC6Q03468 1493 aa16.77■□□□□ 0.28
CRLF3-205ENST00000583805 MROH2BQ7Z745 1585 aa16.72■□□□□ 0.27
CRLF3-205ENST00000583805 LAMC3Q9Y6N6 1575 aa16.72■□□□□ 0.27
CRLF3-205ENST00000583805 ADRA2BP18089 450 aa16.67■□□□□ 0.26
CRLF3-205ENST00000583805 NESP48681 1621 aa16.64■□□□□ 0.25
CRLF3-205ENST00000583805 KIF21AQ7Z4S6 1674 aa16.63■□□□□ 0.25
CRLF3-205ENST00000583805 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
CRLF3-205ENST00000583805 WIZO95785 1651 aa16.59■□□□□ 0.25
CRLF3-205ENST00000583805 DNAJC5Q9H3Z4 198 aa16.54■□□□□ 0.24
CRLF3-205ENST00000583805 PDS5BQ9NTI5 1447 aa16.52■□□□□ 0.23
CRLF3-205ENST00000583805 KCNA4P22459 653 aa16.47■□□□□ 0.23
CRLF3-205ENST00000583805 FOXD1Q16676 465 aa16.47■□□□□ 0.23
CRLF3-205ENST00000583805 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
CRLF3-205ENST00000583805 PRDM2Q13029 1718 aa16.45■□□□□ 0.22
CRLF3-205ENST00000583805 CADPSQ9ULU8 1353 aa16.44■□□□□ 0.22
CRLF3-205ENST00000583805 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
CRLF3-205ENST00000583805 TOP2AP11388 1531 aaKnown RBP16.41■□□□□ 0.22
CRLF3-205ENST00000583805 WDR62O43379 1518 aa16.39■□□□□ 0.21
CRLF3-205ENST00000583805 MRC2Q9UBG0 1479 aa16.38■□□□□ 0.21
CRLF3-205ENST00000583805 RSF1Q96T23 1441 aaPredicted RBP16.36■□□□□ 0.21
CRLF3-205ENST00000583805 CEP164Q9UPV0 1460 aa16.34■□□□□ 0.21
CRLF3-205ENST00000583805 CFTRP13569 1480 aa16.31■□□□□ 0.2
CRLF3-205ENST00000583805 FANCD2Q9BXW9 1451 aa16.29■□□□□ 0.2
CRLF3-205ENST00000583805 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.17
CRLF3-205ENST00000583805 CCDC88BA6NC98 1476 aa16.11■□□□□ 0.17
CRLF3-205ENST00000583805 ABCC8Q09428 1581 aa16.04■□□□□ 0.16
CRLF3-205ENST00000583805 DNMBPQ6XZF7 1577 aa16.01■□□□□ 0.15
CRLF3-205ENST00000583805 IFT140Q96RY7 1462 aa16.01■□□□□ 0.15
CRLF3-205ENST00000583805 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
CRLF3-205ENST00000583805 EIF4G3O43432 1585 aaKnown RBP15.95■□□□□ 0.14
CRLF3-205ENST00000583805 PPP4R3CPQ6ZMV5 832 aa15.94■□□□□ 0.14
CRLF3-205ENST00000583805 SLC4A1APQ9BWU0 796 aaKnown RBP15.94■□□□□ 0.14
CRLF3-205ENST00000583805 TARBP1Q13395 1621 aaKnown RBP15.91■□□□□ 0.14
CRLF3-205ENST00000583805 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
CRLF3-205ENST00000583805 OSCARQ8IYS5 282 aa15.89■□□□□ 0.13
CRLF3-205ENST00000583805 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
CRLF3-205ENST00000583805 WDR97A6NE52 1622 aa15.88■□□□□ 0.13
CRLF3-205ENST00000583805 CHD1O14646 1710 aa15.88■□□□□ 0.13
CRLF3-205ENST00000583805 POLA1P09884 1462 aaPredicted RBP15.83■□□□□ 0.12
CRLF3-205ENST00000583805 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
CRLF3-205ENST00000583805 RIMBP3CA6NJZ7 1639 aa15.82■□□□□ 0.12
CRLF3-205ENST00000583805 RIMBP3BA6NNM3 1639 aa15.82■□□□□ 0.12
CRLF3-205ENST00000583805 RIMBP3Q9UFD9 1639 aa15.82■□□□□ 0.12
CRLF3-205ENST00000583805 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
CRLF3-205ENST00000583805 TRIM41Q8WV44 630 aa15.78■□□□□ 0.12
CRLF3-205ENST00000583805 PBRM1Q86U86 1689 aa15.73■□□□□ 0.11
CRLF3-205ENST00000583805 FGD5Q6ZNL6 1462 aa15.73■□□□□ 0.11
CRLF3-205ENST00000583805 ARHGEF11O15085 1522 aa15.73■□□□□ 0.11
CRLF3-205ENST00000583805 CUX1P39880 1505 aa15.73■□□□□ 0.11
CRLF3-205ENST00000583805 AQRO60306 1485 aaKnown RBP eCLIP15.72■□□□□ 0.11
CRLF3-205ENST00000583805 SOGA1O94964 1423 aa15.7■□□□□ 0.1
CRLF3-205ENST00000583805 RAD54L2Q9Y4B4 1467 aa15.7■□□□□ 0.1
CRLF3-205ENST00000583805 MAGI1Q96QZ7 1491 aaPredicted RBP15.67■□□□□ 0.1
CRLF3-205ENST00000583805 SYNJ1O43426 1573 aa15.65■□□□□ 0.1
CRLF3-205ENST00000583805 BIVM-ERCC5R4GMW8 1640 aa15.64■□□□□ 0.09
CRLF3-205ENST00000583805 SNAPC4Q5SXM2 1469 aa15.64■□□□□ 0.09
CRLF3-205ENST00000583805 ABCA5Q8WWZ7 1642 aa15.63■□□□□ 0.09
CRLF3-205ENST00000583805 GRIN2BQ13224 1484 aa15.63■□□□□ 0.09
CRLF3-205ENST00000583805 CLASP1Q7Z460 1538 aa15.61■□□□□ 0.09
CRLF3-205ENST00000583805 TDRD9Q8NDG6 1382 aaKnown RBP15.61■□□□□ 0.09
CRLF3-205ENST00000583805 ABCA10Q8WWZ4 1543 aa15.59■□□□□ 0.09
CRLF3-205ENST00000583805 TOP2BQ02880 1626 aa15.58■□□□□ 0.09
CRLF3-205ENST00000583805 SYNJ2O15056 1496 aa15.58■□□□□ 0.08
CRLF3-205ENST00000583805 GAPVD1Q14C86 1478 aa15.57■□□□□ 0.08
CRLF3-205ENST00000583805 SUPT5HO00267 1087 aaKnown RBP15.55■□□□□ 0.08
CRLF3-205ENST00000583805 FBLN2P98095 1184 aa15.55■□□□□ 0.08
CRLF3-205ENST00000583805 ARAP1Q96P48 1450 aa15.54■□□□□ 0.08
CRLF3-205ENST00000583805 CHMP7Q8WUX9 453 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms