RNA–Protein interactions for RNA: ENST00000583517.1

NLK-204, Transcript of nemo like kinase, humanhuman

TSL 3

Gene NLK, Length 695 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLK-204ENST00000583517 NISCHQ9Y2I1 1504 aa29.92■■■□□ 2.38
NLK-204ENST00000583517 CCDC180Q9P1Z9 1646 aa26.85■■□□□ 1.89
NLK-204ENST00000583517 ABCC9O60706 1549 aa26.84■■□□□ 1.89
NLK-204ENST00000583517 RB1CC1Q8TDY2 1594 aa25.56■■□□□ 1.68
NLK-204ENST00000583517 NACADO15069 1562 aa25.39■■□□□ 1.66
NLK-204ENST00000583517 DNAJC5BQ9UF47 199 aa25.21■■□□□ 1.63
NLK-204ENST00000583517 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
NLK-204ENST00000583517 MYO15BQ96JP2 1530 aa25.07■■□□□ 1.6
NLK-204ENST00000583517 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
NLK-204ENST00000583517 UNC13AQ9UPW8 1703 aa24.96■■□□□ 1.59
NLK-204ENST00000583517 BICRAQ9NZM4 1560 aa24.84■■□□□ 1.57
NLK-204ENST00000583517 ZCCHC6Q5VYS8 1495 aaKnown RBP24.81■■□□□ 1.56
NLK-204ENST00000583517 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
NLK-204ENST00000583517 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
NLK-204ENST00000583517 SCRIBQ14160 1630 aa24.43■■□□□ 1.5
NLK-204ENST00000583517 CC2D2AQ9P2K1 1620 aa24.26■■□□□ 1.47
NLK-204ENST00000583517 EIF4G1Q04637 1599 aaKnown RBP24.21■■□□□ 1.47
NLK-204ENST00000583517 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
NLK-204ENST00000583517 NCAPD3P42695 1498 aa23.45■■□□□ 1.34
NLK-204ENST00000583517 ATAD2BQ9ULI0 1458 aa23.37■■□□□ 1.33
NLK-204ENST00000583517 SMARCA4P51532 1647 aa23.33■■□□□ 1.33
NLK-204ENST00000583517 SMARCA2P51531 1590 aa23.3■■□□□ 1.32
NLK-204ENST00000583517 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
NLK-204ENST00000583517 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
NLK-204ENST00000583517 CUX2O14529 1486 aa23.17■■□□□ 1.3
NLK-204ENST00000583517 ERCC6Q03468 1493 aa23.17■■□□□ 1.3
NLK-204ENST00000583517 DNAJC5Q9H3Z4 198 aa23.16■■□□□ 1.3
NLK-204ENST00000583517 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.3
NLK-204ENST00000583517 BAZ1BQ9UIG0 1483 aaKnown RBP23.12■■□□□ 1.29
NLK-204ENST00000583517 NESP48681 1621 aa23.06■■□□□ 1.28
NLK-204ENST00000583517 MROH2BQ7Z745 1585 aa23.05■■□□□ 1.28
NLK-204ENST00000583517 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
NLK-204ENST00000583517 THOC2Q8NI27 1593 aaKnown RBP22.85■■□□□ 1.25
NLK-204ENST00000583517 PDS5BQ9NTI5 1447 aa22.78■■□□□ 1.24
NLK-204ENST00000583517 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
NLK-204ENST00000583517 WIZO95785 1651 aa22.74■■□□□ 1.23
NLK-204ENST00000583517 CADPSQ9ULU8 1353 aa22.73■■□□□ 1.23
NLK-204ENST00000583517 MRC2Q9UBG0 1479 aa22.58■■□□□ 1.2
NLK-204ENST00000583517 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
NLK-204ENST00000583517 WDR62O43379 1518 aa22.55■■□□□ 1.2
NLK-204ENST00000583517 CFTRP13569 1480 aa22.48■■□□□ 1.19
NLK-204ENST00000583517 CEP164Q9UPV0 1460 aa22.48■■□□□ 1.19
NLK-204ENST00000583517 TOP2AP11388 1531 aaKnown RBP22.48■■□□□ 1.19
NLK-204ENST00000583517 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
NLK-204ENST00000583517 URB2Q14146 1524 aaKnown RBP22.29■■□□□ 1.16
NLK-204ENST00000583517 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
NLK-204ENST00000583517 CCDC88BA6NC98 1476 aa22.22■■□□□ 1.15
NLK-204ENST00000583517 PRDM2Q13029 1718 aa22.21■■□□□ 1.15
NLK-204ENST00000583517 TRIM41Q8WV44 630 aa22.08■■□□□ 1.13
NLK-204ENST00000583517 OSCARQ8IYS5 282 aa22.07■■□□□ 1.12
NLK-204ENST00000583517 IFT140Q96RY7 1462 aa22.04■■□□□ 1.12
NLK-204ENST00000583517 TOPBP1Q92547 1522 aa22.04■■□□□ 1.12
NLK-204ENST00000583517 ZNF608Q9ULD9 1512 aaPredicted RBP22.01■■□□□ 1.11
NLK-204ENST00000583517 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
NLK-204ENST00000583517 DNMBPQ6XZF7 1577 aa21.95■■□□□ 1.11
NLK-204ENST00000583517 EIF4G3O43432 1585 aaKnown RBP21.89■■□□□ 1.09
NLK-204ENST00000583517 TARBP1Q13395 1621 aaKnown RBP21.86■■□□□ 1.09
NLK-204ENST00000583517 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
NLK-204ENST00000583517 RIMBP3CA6NJZ7 1639 aa21.8■■□□□ 1.08
NLK-204ENST00000583517 RIMBP3BA6NNM3 1639 aa21.8■■□□□ 1.08
NLK-204ENST00000583517 RIMBP3Q9UFD9 1639 aa21.8■■□□□ 1.08
NLK-204ENST00000583517 AQRO60306 1485 aaKnown RBP eCLIP21.8■■□□□ 1.08
NLK-204ENST00000583517 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
NLK-204ENST00000583517 RAD54L2Q9Y4B4 1467 aa21.72■■□□□ 1.07
NLK-204ENST00000583517 SOGA1O94964 1423 aa21.7■■□□□ 1.06
NLK-204ENST00000583517 CHD1O14646 1710 aa21.69■■□□□ 1.06
NLK-204ENST00000583517 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
NLK-204ENST00000583517 CUX1P39880 1505 aa21.65■■□□□ 1.06
NLK-204ENST00000583517 TDRD9Q8NDG6 1382 aaKnown RBP21.65■■□□□ 1.06
NLK-204ENST00000583517 WDR97A6NE52 1622 aa21.64■■□□□ 1.05
NLK-204ENST00000583517 FBLN2P98095 1184 aa21.61■■□□□ 1.05
NLK-204ENST00000583517 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
NLK-204ENST00000583517 CYB5RLQ6IPT4 315 aa21.55■■□□□ 1.04
NLK-204ENST00000583517 ARAP1Q96P48 1450 aa21.53■■□□□ 1.04
NLK-204ENST00000583517 MAGI1Q96QZ7 1491 aaPredicted RBP21.53■■□□□ 1.04
NLK-204ENST00000583517 GRIN2BQ13224 1484 aa21.52■■□□□ 1.04
NLK-204ENST00000583517 CLASP1Q7Z460 1538 aa21.5■■□□□ 1.03
NLK-204ENST00000583517 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
NLK-204ENST00000583517 CHMP7Q8WUX9 453 aaPredicted RBP21.47■■□□□ 1.03
NLK-204ENST00000583517 SYNJ2O15056 1496 aa21.46■■□□□ 1.03
NLK-204ENST00000583517 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
NLK-204ENST00000583517 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
NLK-204ENST00000583517 GAPVD1Q14C86 1478 aa21.44■■□□□ 1.02
NLK-204ENST00000583517 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
NLK-204ENST00000583517 ABCA5Q8WWZ7 1642 aa21.41■■□□□ 1.02
NLK-204ENST00000583517 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1.01
NLK-204ENST00000583517 TOP2BQ02880 1626 aa21.3■■□□□ 1
NLK-204ENST00000583517 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
NLK-204ENST00000583517 TRHP20396 242 aaPredicted RBP21.28■■□□□ 1
NLK-204ENST00000583517 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
NLK-204ENST00000583517 ADAMTS12P58397 1594 aa21.24■□□□□ 0.99
NLK-204ENST00000583517 NUP160Q12769 1436 aa21.2■□□□□ 0.98
NLK-204ENST00000583517 FHAD1B1AJZ9 1412 aa21.17■□□□□ 0.98
NLK-204ENST00000583517 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
NLK-204ENST00000583517 CEP170Q5SW79 1584 aa21.17■□□□□ 0.98
NLK-204ENST00000583517 ERCC6L2Q5T890 1561 aa21.14■□□□□ 0.97
NLK-204ENST00000583517 SHROOM2Q13796 1616 aa21.11■□□□□ 0.97
NLK-204ENST00000583517 CHIC1Q5VXU3 224 aa21.03■□□□□ 0.96
NLK-204ENST00000583517 PRG4Q92954 1404 aaPredicted RBP20.96■□□□□ 0.95
NLK-204ENST00000583517 RUSC2Q8N2Y8 1516 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms