RNA–Protein interactions for RNA: ENST00000583211.5

LIMD2-211, Transcript of LIM domain containing 2, humanhuman

TSL 3 BASIC

Gene LIMD2, Length 1,298 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-211ENST00000583211 NISCHQ9Y2I1 1504 aa44.07■■■■■ 4.65
LIMD2-211ENST00000583211 CCDC180Q9P1Z9 1646 aa39.24■■■■□ 3.87
LIMD2-211ENST00000583211 ABCC9O60706 1549 aa38.05■■■■□ 3.68
LIMD2-211ENST00000583211 NACADO15069 1562 aa36.79■■■■□ 3.48
LIMD2-211ENST00000583211 RB1CC1Q8TDY2 1594 aa36.78■■■■□ 3.48
LIMD2-211ENST00000583211 ZCCHC6Q5VYS8 1495 aaKnown RBP36.76■■■■□ 3.48
LIMD2-211ENST00000583211 MYO15BQ96JP2 1530 aa36.64■■■■□ 3.46
LIMD2-211ENST00000583211 DCAF8L2P0C7V8 631 aa36.6■■■■□ 3.45
LIMD2-211ENST00000583211 DCAF1Q9Y4B6 1507 aa36.54■■■■□ 3.44
LIMD2-211ENST00000583211 UNC13AQ9UPW8 1703 aa36.05■■■■□ 3.36
LIMD2-211ENST00000583211 SCRIBQ14160 1630 aa35.69■■■■□ 3.3
LIMD2-211ENST00000583211 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
LIMD2-211ENST00000583211 PABPN1Q86U42 306 aaKnown RBP eCLIP35.51■■■■□ 3.28
LIMD2-211ENST00000583211 SHROOM4Q9ULL8 1493 aa35.35■■■■□ 3.25
LIMD2-211ENST00000583211 DNAJC5BQ9UF47 199 aa34.7■■■■□ 3.15
LIMD2-211ENST00000583211 EIF4G1Q04637 1599 aaKnown RBP34.69■■■■□ 3.14
LIMD2-211ENST00000583211 CC2D2AQ9P2K1 1620 aa34.51■■■■□ 3.11
LIMD2-211ENST00000583211 CECR2Q9BXF3 1484 aa34.25■■■■□ 3.07
LIMD2-211ENST00000583211 SMARCA4P51532 1647 aa34.2■■■■□ 3.07
LIMD2-211ENST00000583211 BAZ1AQ9NRL2 1556 aaPredicted RBP34.18■■■■□ 3.06
LIMD2-211ENST00000583211 SMARCA2P51531 1590 aa33.94■■■■□ 3.02
LIMD2-211ENST00000583211 MROH2BQ7Z745 1585 aa33.94■■■■□ 3.02
LIMD2-211ENST00000583211 ATAD2BQ9ULI0 1458 aa33.91■■■■□ 3.02
LIMD2-211ENST00000583211 PEG3Q9GZU2 1588 aa33.89■■■■□ 3.02
LIMD2-211ENST00000583211 NCAPD3P42695 1498 aa33.89■■■■□ 3.02
LIMD2-211ENST00000583211 HMGXB3Q12766 1538 aa33.8■■■■□ 3
LIMD2-211ENST00000583211 BAZ1BQ9UIG0 1483 aaKnown RBP33.66■■■□□ 2.98
LIMD2-211ENST00000583211 WIZO95785 1651 aa33.63■■■□□ 2.97
LIMD2-211ENST00000583211 RSF1Q96T23 1441 aaPredicted RBP33.59■■■□□ 2.97
LIMD2-211ENST00000583211 TOP2AP11388 1531 aaKnown RBP33.28■■■□□ 2.92
LIMD2-211ENST00000583211 LAMC3Q9Y6N6 1575 aa33.03■■■□□ 2.88
LIMD2-211ENST00000583211 NESP48681 1621 aa32.98■■■□□ 2.87
LIMD2-211ENST00000583211 CADPSQ9ULU8 1353 aa32.88■■■□□ 2.85
LIMD2-211ENST00000583211 CCDC88BA6NC98 1476 aa32.83■■■□□ 2.85
LIMD2-211ENST00000583211 ERCC6Q03468 1493 aa32.81■■■□□ 2.84
LIMD2-211ENST00000583211 CFTRP13569 1480 aa32.75■■■□□ 2.83
LIMD2-211ENST00000583211 SUPT5HO00267 1087 aaKnown RBP32.75■■■□□ 2.83
LIMD2-211ENST00000583211 PDS5BQ9NTI5 1447 aa32.74■■■□□ 2.83
LIMD2-211ENST00000583211 KIF21AQ7Z4S6 1674 aa32.72■■■□□ 2.83
LIMD2-211ENST00000583211 PRDM2Q13029 1718 aa32.71■■■□□ 2.83
LIMD2-211ENST00000583211 THOC2Q8NI27 1593 aaKnown RBP32.54■■■□□ 2.8
LIMD2-211ENST00000583211 FANCD2Q9BXW9 1451 aa32.51■■■□□ 2.79
LIMD2-211ENST00000583211 CEP164Q9UPV0 1460 aa32.48■■■□□ 2.79
LIMD2-211ENST00000583211 CUX2O14529 1486 aa32.47■■■□□ 2.79
LIMD2-211ENST00000583211 MRC2Q9UBG0 1479 aa32.41■■■□□ 2.78
LIMD2-211ENST00000583211 WDR62O43379 1518 aa32.33■■■□□ 2.77
LIMD2-211ENST00000583211 URB2Q14146 1524 aaKnown RBP32.18■■■□□ 2.74
LIMD2-211ENST00000583211 ABCC8Q09428 1581 aa32.09■■■□□ 2.73
LIMD2-211ENST00000583211 DNMBPQ6XZF7 1577 aa32.05■■■□□ 2.72
LIMD2-211ENST00000583211 TOPBP1Q92547 1522 aa32.03■■■□□ 2.72
LIMD2-211ENST00000583211 CUX1P39880 1505 aa31.84■■■□□ 2.69
LIMD2-211ENST00000583211 IFT140Q96RY7 1462 aa31.79■■■□□ 2.68
LIMD2-211ENST00000583211 POLA1P09884 1462 aaPredicted RBP31.76■■■□□ 2.67
LIMD2-211ENST00000583211 FGD5Q6ZNL6 1462 aa31.71■■■□□ 2.67
LIMD2-211ENST00000583211 TARBP1Q13395 1621 aaKnown RBP31.71■■■□□ 2.67
LIMD2-211ENST00000583211 BIVM-ERCC5R4GMW8 1640 aa31.69■■■□□ 2.66
LIMD2-211ENST00000583211 WRNQ14191 1432 aaPredicted RBP eCLIP31.68■■■□□ 2.66
LIMD2-211ENST00000583211 TOP2BQ02880 1626 aa31.67■■■□□ 2.66
LIMD2-211ENST00000583211 SYNJ1O43426 1573 aa31.63■■■□□ 2.65
LIMD2-211ENST00000583211 SOGA1O94964 1423 aa31.6■■■□□ 2.65
LIMD2-211ENST00000583211 ZNF608Q9ULD9 1512 aaPredicted RBP31.59■■■□□ 2.65
LIMD2-211ENST00000583211 RAD54L2Q9Y4B4 1467 aa31.58■■■□□ 2.65
LIMD2-211ENST00000583211 EIF4G3O43432 1585 aaKnown RBP31.56■■■□□ 2.64
LIMD2-211ENST00000583211 WDR97A6NE52 1622 aa31.55■■■□□ 2.64
LIMD2-211ENST00000583211 ABCA10Q8WWZ4 1543 aa31.43■■■□□ 2.62
LIMD2-211ENST00000583211 AQRO60306 1485 aaKnown RBP eCLIP31.41■■■□□ 2.62
LIMD2-211ENST00000583211 TDRD9Q8NDG6 1382 aaKnown RBP31.36■■■□□ 2.61
LIMD2-211ENST00000583211 ABCA5Q8WWZ7 1642 aa31.33■■■□□ 2.61
LIMD2-211ENST00000583211 PBRM1Q86U86 1689 aa31.31■■■□□ 2.6
LIMD2-211ENST00000583211 GAPVD1Q14C86 1478 aa31.27■■■□□ 2.6
LIMD2-211ENST00000583211 GRIN2BQ13224 1484 aa31.25■■■□□ 2.59
LIMD2-211ENST00000583211 DNAJC5Q9H3Z4 198 aa31.19■■■□□ 2.58
LIMD2-211ENST00000583211 MAGI1Q96QZ7 1491 aaPredicted RBP31.18■■■□□ 2.58
LIMD2-211ENST00000583211 CHD1O14646 1710 aa31.18■■■□□ 2.58
LIMD2-211ENST00000583211 SNAPC4Q5SXM2 1469 aa31.16■■■□□ 2.58
LIMD2-211ENST00000583211 ERICH3Q5RHP9 1530 aa31.08■■■□□ 2.57
LIMD2-211ENST00000583211 OSCARQ8IYS5 282 aa31.07■■■□□ 2.56
LIMD2-211ENST00000583211 SYNJ2O15056 1496 aa31.04■■■□□ 2.56
LIMD2-211ENST00000583211 KIF27Q86VH2 1401 aa31.02■■■□□ 2.56
LIMD2-211ENST00000583211 ADAMTS12P58397 1594 aa31■■■□□ 2.55
LIMD2-211ENST00000583211 TRIM41Q8WV44 630 aa30.99■■■□□ 2.55
LIMD2-211ENST00000583211 FBLN2P98095 1184 aa30.96■■■□□ 2.55
LIMD2-211ENST00000583211 CHMP7Q8WUX9 453 aaPredicted RBP30.94■■■□□ 2.54
LIMD2-211ENST00000583211 FHAD1B1AJZ9 1412 aa30.91■■■□□ 2.54
LIMD2-211ENST00000583211 CUL7Q14999 1698 aa30.88■■■□□ 2.53
LIMD2-211ENST00000583211 GRIN2AQ12879 1464 aa30.85■■■□□ 2.53
LIMD2-211ENST00000583211 IGF1RP08069 1367 aa30.82■■■□□ 2.52
LIMD2-211ENST00000583211 CLASP1Q7Z460 1538 aa30.78■■■□□ 2.52
LIMD2-211ENST00000583211 RUSC2Q8N2Y8 1516 aa30.73■■■□□ 2.51
LIMD2-211ENST00000583211 NUP160Q12769 1436 aa30.72■■■□□ 2.51
LIMD2-211ENST00000583211 CEP170Q5SW79 1584 aa30.71■■■□□ 2.51
LIMD2-211ENST00000583211 CHIC1Q5VXU3 224 aa30.69■■■□□ 2.5
LIMD2-211ENST00000583211 CARMIL1Q5VZK9 1371 aa30.66■■■□□ 2.5
LIMD2-211ENST00000583211 RIMBP3CA6NJZ7 1639 aa30.63■■■□□ 2.49
LIMD2-211ENST00000583211 RIMBP3BA6NNM3 1639 aa30.63■■■□□ 2.49
LIMD2-211ENST00000583211 RIMBP3Q9UFD9 1639 aa30.63■■■□□ 2.49
LIMD2-211ENST00000583211 ARHGEF11O15085 1522 aa30.62■■■□□ 2.49
LIMD2-211ENST00000583211 EEA1Q15075 1411 aa30.56■■■□□ 2.48
LIMD2-211ENST00000583211 RAPGEF2Q9Y4G8 1499 aa30.53■■■□□ 2.48
LIMD2-211ENST00000583211 SHROOM2Q13796 1616 aa30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms