RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 NISCHQ9Y2I1 1504 aa22.54■■□□□ 1.2
RFFL-210ENST00000582308 CCDC180Q9P1Z9 1646 aa19.88■□□□□ 0.77
RFFL-210ENST00000582308 ABCC9O60706 1549 aa19.1■□□□□ 0.65
RFFL-210ENST00000582308 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
RFFL-210ENST00000582308 DCAF8L2P0C7V8 631 aa18.69■□□□□ 0.58
RFFL-210ENST00000582308 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.58
RFFL-210ENST00000582308 NACADO15069 1562 aa18.59■□□□□ 0.57
RFFL-210ENST00000582308 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
RFFL-210ENST00000582308 RB1CC1Q8TDY2 1594 aa18.51■□□□□ 0.55
RFFL-210ENST00000582308 UNC13AQ9UPW8 1703 aa18.2■□□□□ 0.5
RFFL-210ENST00000582308 SCRIBQ14160 1630 aa18.19■□□□□ 0.5
RFFL-210ENST00000582308 SHROOM4Q9ULL8 1493 aa18.05■□□□□ 0.48
RFFL-210ENST00000582308 BICRAQ9NZM4 1560 aa18■□□□□ 0.47
RFFL-210ENST00000582308 PABPN1Q86U42 306 aaKnown RBP eCLIP17.93■□□□□ 0.46
RFFL-210ENST00000582308 CECR2Q9BXF3 1484 aa17.54■□□□□ 0.4
RFFL-210ENST00000582308 EIF4G1Q04637 1599 aaKnown RBP17.46■□□□□ 0.39
RFFL-210ENST00000582308 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
RFFL-210ENST00000582308 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
RFFL-210ENST00000582308 MROH2BQ7Z745 1585 aa17.4■□□□□ 0.38
RFFL-210ENST00000582308 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
RFFL-210ENST00000582308 CC2D2AQ9P2K1 1620 aa17.31■□□□□ 0.36
RFFL-210ENST00000582308 DNAJC5BQ9UF47 199 aa17.25■□□□□ 0.35
RFFL-210ENST00000582308 WIZO95785 1651 aa17.25■□□□□ 0.35
RFFL-210ENST00000582308 PEG3Q9GZU2 1588 aa17.23■□□□□ 0.35
RFFL-210ENST00000582308 ATAD2BQ9ULI0 1458 aa17.22■□□□□ 0.35
RFFL-210ENST00000582308 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
RFFL-210ENST00000582308 SUPT5HO00267 1087 aaKnown RBP17.16■□□□□ 0.34
RFFL-210ENST00000582308 NCAPD3P42695 1498 aa17.15■□□□□ 0.34
RFFL-210ENST00000582308 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
RFFL-210ENST00000582308 HMGXB3Q12766 1538 aa17.09■□□□□ 0.33
RFFL-210ENST00000582308 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
RFFL-210ENST00000582308 CCDC88BA6NC98 1476 aa16.86■□□□□ 0.29
RFFL-210ENST00000582308 NESP48681 1621 aa16.67■□□□□ 0.26
RFFL-210ENST00000582308 CADPSQ9ULU8 1353 aa16.66■□□□□ 0.26
RFFL-210ENST00000582308 CFTRP13569 1480 aa16.65■□□□□ 0.26
RFFL-210ENST00000582308 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
RFFL-210ENST00000582308 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
RFFL-210ENST00000582308 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
RFFL-210ENST00000582308 KIF21AQ7Z4S6 1674 aa16.5■□□□□ 0.23
RFFL-210ENST00000582308 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
RFFL-210ENST00000582308 CEP164Q9UPV0 1460 aa16.42■□□□□ 0.22
RFFL-210ENST00000582308 ERCC6Q03468 1493 aa16.41■□□□□ 0.22
RFFL-210ENST00000582308 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
RFFL-210ENST00000582308 THOC2Q8NI27 1593 aaKnown RBP16.32■□□□□ 0.2
RFFL-210ENST00000582308 MRC2Q9UBG0 1479 aa16.32■□□□□ 0.2
RFFL-210ENST00000582308 URB2Q14146 1524 aaKnown RBP16.31■□□□□ 0.2
RFFL-210ENST00000582308 CUX1P39880 1505 aa16.3■□□□□ 0.2
RFFL-210ENST00000582308 WRNQ14191 1432 aaPredicted RBP eCLIP16.29■□□□□ 0.2
RFFL-210ENST00000582308 SYNJ1O43426 1573 aa16.27■□□□□ 0.2
RFFL-210ENST00000582308 DNMBPQ6XZF7 1577 aa16.27■□□□□ 0.2
RFFL-210ENST00000582308 TOPBP1Q92547 1522 aa16.27■□□□□ 0.2
RFFL-210ENST00000582308 WDR62O43379 1518 aa16.26■□□□□ 0.19
RFFL-210ENST00000582308 BIVM-ERCC5R4GMW8 1640 aa16.25■□□□□ 0.19
RFFL-210ENST00000582308 TOP2BQ02880 1626 aa16.24■□□□□ 0.19
RFFL-210ENST00000582308 CHIC1Q5VXU3 224 aa16.24■□□□□ 0.19
RFFL-210ENST00000582308 TRIM41Q8WV44 630 aa16.17■□□□□ 0.18
RFFL-210ENST00000582308 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
RFFL-210ENST00000582308 POLA1P09884 1462 aaPredicted RBP16.15■□□□□ 0.18
RFFL-210ENST00000582308 CUX2O14529 1486 aa16.12■□□□□ 0.17
RFFL-210ENST00000582308 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
RFFL-210ENST00000582308 SOGA1O94964 1423 aa16.09■□□□□ 0.17
RFFL-210ENST00000582308 TARBP1Q13395 1621 aaKnown RBP16.08■□□□□ 0.17
RFFL-210ENST00000582308 IFT140Q96RY7 1462 aa16.05■□□□□ 0.16
RFFL-210ENST00000582308 WDR97A6NE52 1622 aa16.05■□□□□ 0.16
RFFL-210ENST00000582308 ABCA10Q8WWZ4 1543 aa16.02■□□□□ 0.15
RFFL-210ENST00000582308 ZNF608Q9ULD9 1512 aaPredicted RBP15.99■□□□□ 0.15
RFFL-210ENST00000582308 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.15
RFFL-210ENST00000582308 RUSC2Q8N2Y8 1516 aa15.94■□□□□ 0.14
RFFL-210ENST00000582308 AQRO60306 1485 aaKnown RBP eCLIP15.94■□□□□ 0.14
RFFL-210ENST00000582308 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
RFFL-210ENST00000582308 KIF27Q86VH2 1401 aa15.93■□□□□ 0.14
RFFL-210ENST00000582308 EIF4G3O43432 1585 aaKnown RBP15.92■□□□□ 0.14
RFFL-210ENST00000582308 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
RFFL-210ENST00000582308 PBRM1Q86U86 1689 aa15.89■□□□□ 0.13
RFFL-210ENST00000582308 FAM9AQ8IZU1 332 aaPredicted RBP15.85■□□□□ 0.13
RFFL-210ENST00000582308 EEA1Q15075 1411 aa15.85■□□□□ 0.13
RFFL-210ENST00000582308 GRIN2BQ13224 1484 aa15.84■□□□□ 0.13
RFFL-210ENST00000582308 IGF1RP08069 1367 aa15.84■□□□□ 0.13
RFFL-210ENST00000582308 ERICH3Q5RHP9 1530 aa15.83■□□□□ 0.12
RFFL-210ENST00000582308 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
RFFL-210ENST00000582308 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
RFFL-210ENST00000582308 MAGI1Q96QZ7 1491 aaPredicted RBP15.77■□□□□ 0.11
RFFL-210ENST00000582308 CUL7Q14999 1698 aa15.76■□□□□ 0.11
RFFL-210ENST00000582308 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
RFFL-210ENST00000582308 CARMIL1Q5VZK9 1371 aa15.75■□□□□ 0.11
RFFL-210ENST00000582308 FHAD1B1AJZ9 1412 aa15.73■□□□□ 0.11
RFFL-210ENST00000582308 PRXQ9BXM0 1461 aa15.72■□□□□ 0.11
RFFL-210ENST00000582308 CHD1O14646 1710 aa15.71■□□□□ 0.1
RFFL-210ENST00000582308 SYNJ2O15056 1496 aa15.7■□□□□ 0.1
RFFL-210ENST00000582308 KIF21BO75037 1637 aa15.68■□□□□ 0.1
RFFL-210ENST00000582308 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
RFFL-210ENST00000582308 CHMP7Q8WUX9 453 aaPredicted RBP15.66■□□□□ 0.1
RFFL-210ENST00000582308 GRIN2AQ12879 1464 aa15.65■□□□□ 0.1
RFFL-210ENST00000582308 FBLN2P98095 1184 aa15.65■□□□□ 0.1
RFFL-210ENST00000582308 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
RFFL-210ENST00000582308 GOLGA3Q08378 1498 aa15.6■□□□□ 0.09
RFFL-210ENST00000582308 LOC105371045A0A1W2PR82 267 aa15.6■□□□□ 0.09
RFFL-210ENST00000582308 CEP170Q5SW79 1584 aa15.58■□□□□ 0.08
RFFL-210ENST00000582308 NUP160Q12769 1436 aa15.57■□□□□ 0.08
RFFL-210ENST00000582308 CTTNBP2Q8WZ74 1663 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms