RNA–Protein interactions for RNA: ENST00000582275.5

CDK5RAP3-224, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 442 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-224ENST00000582275 NISCHQ9Y2I1 1504 aa22.45■■□□□ 1.18
CDK5RAP3-224ENST00000582275 AEBP2Q6ZN18 517 aaPredicted RBP21.64■■□□□ 1.05
CDK5RAP3-224ENST00000582275 CHIC1Q5VXU3 224 aa21.03■□□□□ 0.96
CDK5RAP3-224ENST00000582275 ABCC9O60706 1549 aa20.78■□□□□ 0.92
CDK5RAP3-224ENST00000582275 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
CDK5RAP3-224ENST00000582275 DNAJC5BQ9UF47 199 aa19.88■□□□□ 0.77
CDK5RAP3-224ENST00000582275 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
CDK5RAP3-224ENST00000582275 NACADO15069 1562 aa19.41■□□□□ 0.7
CDK5RAP3-224ENST00000582275 PABPN1Q86U42 306 aaKnown RBP eCLIP19.26■□□□□ 0.67
CDK5RAP3-224ENST00000582275 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
CDK5RAP3-224ENST00000582275 UNC13AQ9UPW8 1703 aa19.08■□□□□ 0.64
CDK5RAP3-224ENST00000582275 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
CDK5RAP3-224ENST00000582275 BICRAQ9NZM4 1560 aa18.99■□□□□ 0.63
CDK5RAP3-224ENST00000582275 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
CDK5RAP3-224ENST00000582275 CECR2Q9BXF3 1484 aa18.82■□□□□ 0.6
CDK5RAP3-224ENST00000582275 CC2D2AQ9P2K1 1620 aa18.76■□□□□ 0.59
CDK5RAP3-224ENST00000582275 DNAJC5Q9H3Z4 198 aa18.72■□□□□ 0.59
CDK5RAP3-224ENST00000582275 EIF4G1Q04637 1599 aaKnown RBP18.61■□□□□ 0.57
CDK5RAP3-224ENST00000582275 DCAF1Q9Y4B6 1507 aa18.57■□□□□ 0.56
CDK5RAP3-224ENST00000582275 PHF23Q9BUL5 403 aaPredicted RBP18.49■□□□□ 0.55
CDK5RAP3-224ENST00000582275 ZCCHC6Q5VYS8 1495 aaKnown RBP18.49■□□□□ 0.55
CDK5RAP3-224ENST00000582275 SCRIBQ14160 1630 aa18.45■□□□□ 0.54
CDK5RAP3-224ENST00000582275 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
CDK5RAP3-224ENST00000582275 CUX2O14529 1486 aa18.21■□□□□ 0.51
CDK5RAP3-224ENST00000582275 ERCC6Q03468 1493 aa18.05■□□□□ 0.48
CDK5RAP3-224ENST00000582275 NCAPD3P42695 1498 aa17.92■□□□□ 0.46
CDK5RAP3-224ENST00000582275 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
CDK5RAP3-224ENST00000582275 HMGXB3Q12766 1538 aa17.73■□□□□ 0.43
CDK5RAP3-224ENST00000582275 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
CDK5RAP3-224ENST00000582275 NESP48681 1621 aa17.68■□□□□ 0.42
CDK5RAP3-224ENST00000582275 TRIM41Q8WV44 630 aa17.65■□□□□ 0.42
CDK5RAP3-224ENST00000582275 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
CDK5RAP3-224ENST00000582275 SMARCA4P51532 1647 aa17.59■□□□□ 0.41
CDK5RAP3-224ENST00000582275 LAMC3Q9Y6N6 1575 aa17.58■□□□□ 0.41
CDK5RAP3-224ENST00000582275 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
CDK5RAP3-224ENST00000582275 PDS5BQ9NTI5 1447 aa17.54■□□□□ 0.4
CDK5RAP3-224ENST00000582275 BAZ1AQ9NRL2 1556 aaPredicted RBP17.49■□□□□ 0.39
CDK5RAP3-224ENST00000582275 PEG3Q9GZU2 1588 aa17.46■□□□□ 0.39
CDK5RAP3-224ENST00000582275 KIF21AQ7Z4S6 1674 aa17.43■□□□□ 0.38
CDK5RAP3-224ENST00000582275 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
CDK5RAP3-224ENST00000582275 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
CDK5RAP3-224ENST00000582275 WDR62O43379 1518 aa17.32■□□□□ 0.36
CDK5RAP3-224ENST00000582275 OSCARQ8IYS5 282 aa17.31■□□□□ 0.36
CDK5RAP3-224ENST00000582275 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
CDK5RAP3-224ENST00000582275 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
CDK5RAP3-224ENST00000582275 FANCD2Q9BXW9 1451 aa17.13■□□□□ 0.33
CDK5RAP3-224ENST00000582275 FOXD1Q16676 465 aa17.07■□□□□ 0.32
CDK5RAP3-224ENST00000582275 CFTRP13569 1480 aa17.04■□□□□ 0.32
CDK5RAP3-224ENST00000582275 RIMBP3CA6NJZ7 1639 aa17.03■□□□□ 0.32
CDK5RAP3-224ENST00000582275 RIMBP3BA6NNM3 1639 aa17.03■□□□□ 0.32
CDK5RAP3-224ENST00000582275 RIMBP3Q9UFD9 1639 aa17.03■□□□□ 0.32
CDK5RAP3-224ENST00000582275 PLPPR3Q6T4P5 718 aa17.02■□□□□ 0.32
CDK5RAP3-224ENST00000582275 WIZO95785 1651 aa16.99■□□□□ 0.31
CDK5RAP3-224ENST00000582275 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
CDK5RAP3-224ENST00000582275 ARHGEF11O15085 1522 aa16.96■□□□□ 0.3
CDK5RAP3-224ENST00000582275 IFT140Q96RY7 1462 aa16.9■□□□□ 0.3
CDK5RAP3-224ENST00000582275 CYB5RLQ6IPT4 315 aa16.88■□□□□ 0.29
CDK5RAP3-224ENST00000582275 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
CDK5RAP3-224ENST00000582275 ZNF608Q9ULD9 1512 aaPredicted RBP16.82■□□□□ 0.28
CDK5RAP3-224ENST00000582275 TOP2AP11388 1531 aaKnown RBP16.81■□□□□ 0.28
CDK5RAP3-224ENST00000582275 PRDM2Q13029 1718 aa16.79■□□□□ 0.28
CDK5RAP3-224ENST00000582275 ABCC8Q09428 1581 aa16.77■□□□□ 0.27
CDK5RAP3-224ENST00000582275 RSF1Q96T23 1441 aaPredicted RBP16.76■□□□□ 0.27
CDK5RAP3-224ENST00000582275 ARAP1Q96P48 1450 aa16.74■□□□□ 0.27
CDK5RAP3-224ENST00000582275 TOPBP1Q92547 1522 aa16.74■□□□□ 0.27
CDK5RAP3-224ENST00000582275 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
CDK5RAP3-224ENST00000582275 CHD1O14646 1710 aa16.67■□□□□ 0.26
CDK5RAP3-224ENST00000582275 FBLN2P98095 1184 aa16.67■□□□□ 0.26
CDK5RAP3-224ENST00000582275 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
CDK5RAP3-224ENST00000582275 AQRO60306 1485 aaKnown RBP eCLIP16.63■□□□□ 0.252e-7■■■□□ 16.6
CDK5RAP3-224ENST00000582275 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
CDK5RAP3-224ENST00000582275 TARBP1Q13395 1621 aaKnown RBP16.59■□□□□ 0.25
CDK5RAP3-224ENST00000582275 POLA1P09884 1462 aaPredicted RBP16.53■□□□□ 0.24
CDK5RAP3-224ENST00000582275 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
CDK5RAP3-224ENST00000582275 CLASP1Q7Z460 1538 aa16.5■□□□□ 0.23
CDK5RAP3-224ENST00000582275 WDR97A6NE52 1622 aa16.5■□□□□ 0.23
CDK5RAP3-224ENST00000582275 CHMP7Q8WUX9 453 aaPredicted RBP16.5■□□□□ 0.23
CDK5RAP3-224ENST00000582275 SOGA1O94964 1423 aa16.48■□□□□ 0.23
CDK5RAP3-224ENST00000582275 TDRD9Q8NDG6 1382 aaKnown RBP16.47■□□□□ 0.23
CDK5RAP3-224ENST00000582275 SNAPC4Q5SXM2 1469 aa16.47■□□□□ 0.23
CDK5RAP3-224ENST00000582275 MAGI1Q96QZ7 1491 aaPredicted RBP16.47■□□□□ 0.23
CDK5RAP3-224ENST00000582275 RAD54L2Q9Y4B4 1467 aa16.44■□□□□ 0.22
CDK5RAP3-224ENST00000582275 GRIN2BQ13224 1484 aa16.41■□□□□ 0.22
CDK5RAP3-224ENST00000582275 SYNJ2O15056 1496 aa16.4■□□□□ 0.22
CDK5RAP3-224ENST00000582275 GAPVD1Q14C86 1478 aa16.4■□□□□ 0.22
CDK5RAP3-224ENST00000582275 PPP6R1Q9UPN7 881 aa16.35■□□□□ 0.21
CDK5RAP3-224ENST00000582275 FGD5Q6ZNL6 1462 aa16.35■□□□□ 0.21
CDK5RAP3-224ENST00000582275 ADRA2BP18089 450 aa16.33■□□□□ 0.2
CDK5RAP3-224ENST00000582275 CUX1P39880 1505 aa16.24■□□□□ 0.19
CDK5RAP3-224ENST00000582275 PBRM1Q86U86 1689 aa16.23■□□□□ 0.19
CDK5RAP3-224ENST00000582275 ABCA10Q8WWZ4 1543 aa16.18■□□□□ 0.18
CDK5RAP3-224ENST00000582275 GRIN2AQ12879 1464 aa16.16■□□□□ 0.18
CDK5RAP3-224ENST00000582275 ABCA5Q8WWZ7 1642 aa16.15■□□□□ 0.18
CDK5RAP3-224ENST00000582275 CEP170Q5SW79 1584 aa16.14■□□□□ 0.17
CDK5RAP3-224ENST00000582275 ERCC6L2Q5T890 1561 aa16.14■□□□□ 0.17
CDK5RAP3-224ENST00000582275 NUP160Q12769 1436 aa16.14■□□□□ 0.17
CDK5RAP3-224ENST00000582275 KIF13AQ9H1H9 1805 aa16.1■□□□□ 0.17
CDK5RAP3-224ENST00000582275 SHROOM2Q13796 1616 aa16.09■□□□□ 0.17
CDK5RAP3-224ENST00000582275 ADAMTS12P58397 1594 aa16.08■□□□□ 0.16
CDK5RAP3-224ENST00000582275 FHAD1B1AJZ9 1412 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms