RNA–Protein interactions for RNA: ENST00000582240.5

PPP4R1-221, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-221ENST00000582240 NISCHQ9Y2I1 1504 aa50.01■■■■■ 5.6
PPP4R1-221ENST00000582240 CCDC180Q9P1Z9 1646 aa44.28■■■■■ 4.68
PPP4R1-221ENST00000582240 ABCC9O60706 1549 aa43.57■■■■■ 4.56
PPP4R1-221ENST00000582240 DCAF8L2P0C7V8 631 aa42.06■■■■■ 4.32
PPP4R1-221ENST00000582240 RB1CC1Q8TDY2 1594 aa41.73■■■■■ 4.27
PPP4R1-221ENST00000582240 NACADO15069 1562 aa41.68■■■■■ 4.26
PPP4R1-221ENST00000582240 ZCCHC6Q5VYS8 1495 aaKnown RBP41.65■■■■■ 4.26
PPP4R1-221ENST00000582240 MYO15BQ96JP2 1530 aa41.36■■■■■ 4.21
PPP4R1-221ENST00000582240 DCAF1Q9Y4B6 1507 aa41.24■■■■■ 4.19
PPP4R1-221ENST00000582240 PABPN1Q86U42 306 aaKnown RBP eCLIP40.84■■■■■ 4.13
PPP4R1-221ENST00000582240 UNC13AQ9UPW8 1703 aa40.79■■■■■ 4.12
PPP4R1-221ENST00000582240 SCRIBQ14160 1630 aa40.63■■■■■ 4.09
PPP4R1-221ENST00000582240 BICRAQ9NZM4 1560 aa40.55■■■■■ 4.08
PPP4R1-221ENST00000582240 DNAJC5BQ9UF47 199 aa40.06■■■■■ 4
PPP4R1-221ENST00000582240 SHROOM4Q9ULL8 1493 aa39.89■■■■□ 3.98
PPP4R1-221ENST00000582240 EIF4G1Q04637 1599 aaKnown RBP39.45■■■■□ 3.91
PPP4R1-221ENST00000582240 CC2D2AQ9P2K1 1620 aa39.3■■■■□ 3.88
PPP4R1-221ENST00000582240 CECR2Q9BXF3 1484 aa39.1■■■■□ 3.85
PPP4R1-221ENST00000582240 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
PPP4R1-221ENST00000582240 BAZ1AQ9NRL2 1556 aaPredicted RBP38.7■■■■□ 3.79
PPP4R1-221ENST00000582240 MROH2BQ7Z745 1585 aa38.63■■■■□ 3.77
PPP4R1-221ENST00000582240 ATAD2BQ9ULI0 1458 aa38.6■■■■□ 3.77
PPP4R1-221ENST00000582240 NCAPD3P42695 1498 aa38.52■■■■□ 3.76
PPP4R1-221ENST00000582240 SMARCA2P51531 1590 aa38.46■■■■□ 3.75
PPP4R1-221ENST00000582240 PEG3Q9GZU2 1588 aa38.3■■■■□ 3.72
PPP4R1-221ENST00000582240 BAZ1BQ9UIG0 1483 aaKnown RBP38.27■■■■□ 3.72
PPP4R1-221ENST00000582240 HMGXB3Q12766 1538 aa38.26■■■■□ 3.72
PPP4R1-221ENST00000582240 WIZO95785 1651 aa38.2■■■■□ 3.71
PPP4R1-221ENST00000582240 RSF1Q96T23 1441 aaPredicted RBP38.2■■■■□ 3.71
PPP4R1-221ENST00000582240 NESP48681 1621 aa37.73■■■■□ 3.63
PPP4R1-221ENST00000582240 TOP2AP11388 1531 aaKnown RBP37.71■■■■□ 3.63
PPP4R1-221ENST00000582240 SUPT5HO00267 1087 aaKnown RBP37.48■■■■□ 3.59
PPP4R1-221ENST00000582240 ERCC6Q03468 1493 aa37.47■■■■□ 3.59
PPP4R1-221ENST00000582240 CADPSQ9ULU8 1353 aa37.45■■■■□ 3.59
PPP4R1-221ENST00000582240 LAMC3Q9Y6N6 1575 aa37.43■■■■□ 3.58
PPP4R1-221ENST00000582240 CCDC88BA6NC98 1476 aa37.38■■■■□ 3.57
PPP4R1-221ENST00000582240 PDS5BQ9NTI5 1447 aa37.25■■■■□ 3.55
PPP4R1-221ENST00000582240 CFTRP13569 1480 aa37.2■■■■□ 3.55
PPP4R1-221ENST00000582240 KIF21AQ7Z4S6 1674 aa37.15■■■■□ 3.54
PPP4R1-221ENST00000582240 FANCD2Q9BXW9 1451 aa37.03■■■■□ 3.52
PPP4R1-221ENST00000582240 THOC2Q8NI27 1593 aaKnown RBP36.99■■■■□ 3.51
PPP4R1-221ENST00000582240 CUX2O14529 1486 aa36.94■■■■□ 3.5
PPP4R1-221ENST00000582240 CEP164Q9UPV0 1460 aa36.94■■■■□ 3.5
PPP4R1-221ENST00000582240 MRC2Q9UBG0 1479 aa36.88■■■■□ 3.5
PPP4R1-221ENST00000582240 PRDM2Q13029 1718 aa36.76■■■■□ 3.47
PPP4R1-221ENST00000582240 WDR62O43379 1518 aa36.71■■■■□ 3.47
PPP4R1-221ENST00000582240 URB2Q14146 1524 aaKnown RBP36.68■■■■□ 3.46
PPP4R1-221ENST00000582240 TOPBP1Q92547 1522 aa36.44■■■■□ 3.42
PPP4R1-221ENST00000582240 DNMBPQ6XZF7 1577 aa36.34■■■■□ 3.41
PPP4R1-221ENST00000582240 ABCC8Q09428 1581 aa36.32■■■■□ 3.4
PPP4R1-221ENST00000582240 CUX1P39880 1505 aa36.21■■■■□ 3.39
PPP4R1-221ENST00000582240 IFT140Q96RY7 1462 aa36.15■■■■□ 3.38
PPP4R1-221ENST00000582240 POLA1P09884 1462 aaPredicted RBP36.13■■■■□ 3.37
PPP4R1-221ENST00000582240 ZNF608Q9ULD9 1512 aaPredicted RBP36.1■■■■□ 3.37
PPP4R1-221ENST00000582240 RAD54L2Q9Y4B4 1467 aa36.09■■■■□ 3.37
PPP4R1-221ENST00000582240 FGD5Q6ZNL6 1462 aa36.08■■■■□ 3.37
PPP4R1-221ENST00000582240 SOGA1O94964 1423 aa36.04■■■■□ 3.36
PPP4R1-221ENST00000582240 TARBP1Q13395 1621 aaKnown RBP35.99■■■■□ 3.35
PPP4R1-221ENST00000582240 WRNQ14191 1432 aaPredicted RBP eCLIP35.99■■■■□ 3.35
PPP4R1-221ENST00000582240 AQRO60306 1485 aaKnown RBP eCLIP35.93■■■■□ 3.347e-12■■□□□ 13.1
PPP4R1-221ENST00000582240 SYNJ1O43426 1573 aa35.9■■■■□ 3.34
PPP4R1-221ENST00000582240 DNAJC5Q9H3Z4 198 aa35.9■■■■□ 3.34
PPP4R1-221ENST00000582240 TDRD9Q8NDG6 1382 aaKnown RBP35.89■■■■□ 3.34
PPP4R1-221ENST00000582240 EIF4G3O43432 1585 aaKnown RBP35.84■■■■□ 3.33
PPP4R1-221ENST00000582240 TOP2BQ02880 1626 aa35.83■■■■□ 3.33
PPP4R1-221ENST00000582240 BIVM-ERCC5R4GMW8 1640 aa35.79■■■■□ 3.32
PPP4R1-221ENST00000582240 ABCA10Q8WWZ4 1543 aa35.67■■■■□ 3.3
PPP4R1-221ENST00000582240 WDR97A6NE52 1622 aa35.65■■■■□ 3.3
PPP4R1-221ENST00000582240 OSCARQ8IYS5 282 aa35.58■■■■□ 3.29
PPP4R1-221ENST00000582240 GAPVD1Q14C86 1478 aa35.58■■■■□ 3.29
PPP4R1-221ENST00000582240 FBLN2P98095 1184 aa35.56■■■■□ 3.28
PPP4R1-221ENST00000582240 GRIN2BQ13224 1484 aa35.54■■■■□ 3.28
PPP4R1-221ENST00000582240 SNAPC4Q5SXM2 1469 aa35.54■■■■□ 3.28
PPP4R1-221ENST00000582240 ABCA5Q8WWZ7 1642 aa35.49■■■■□ 3.27
PPP4R1-221ENST00000582240 PBRM1Q86U86 1689 aa35.41■■■■□ 3.26
PPP4R1-221ENST00000582240 CHMP7Q8WUX9 453 aaPredicted RBP35.39■■■■□ 3.26
PPP4R1-221ENST00000582240 CHD1O14646 1710 aa35.38■■■■□ 3.25
PPP4R1-221ENST00000582240 MAGI1Q96QZ7 1491 aaPredicted RBP35.38■■■■□ 3.25
PPP4R1-221ENST00000582240 TRIM41Q8WV44 630 aa35.29■■■■□ 3.24
PPP4R1-221ENST00000582240 SYNJ2O15056 1496 aa35.29■■■■□ 3.24
PPP4R1-221ENST00000582240 KIF27Q86VH2 1401 aa35.21■■■■□ 3.23
PPP4R1-221ENST00000582240 ERICH3Q5RHP9 1530 aa35.2■■■■□ 3.23
PPP4R1-221ENST00000582240 ADAMTS12P58397 1594 aa35.17■■■■□ 3.22
PPP4R1-221ENST00000582240 FHAD1B1AJZ9 1412 aa35.15■■■■□ 3.22
PPP4R1-221ENST00000582240 IGF1RP08069 1367 aa35.13■■■■□ 3.21
PPP4R1-221ENST00000582240 GRIN2AQ12879 1464 aa35.09■■■■□ 3.21
PPP4R1-221ENST00000582240 RUSC2Q8N2Y8 1516 aa35.08■■■■□ 3.21
PPP4R1-221ENST00000582240 CLASP1Q7Z460 1538 aa35■■■■□ 3.19
PPP4R1-221ENST00000582240 CHIC1Q5VXU3 224 aa34.95■■■■□ 3.19
PPP4R1-221ENST00000582240 RIMBP3CA6NJZ7 1639 aa34.93■■■■□ 3.18
PPP4R1-221ENST00000582240 RIMBP3BA6NNM3 1639 aa34.93■■■■□ 3.18
PPP4R1-221ENST00000582240 RIMBP3Q9UFD9 1639 aa34.93■■■■□ 3.18
PPP4R1-221ENST00000582240 CEP170Q5SW79 1584 aa34.93■■■■□ 3.18
PPP4R1-221ENST00000582240 ARHGEF11O15085 1522 aa34.93■■■■□ 3.18
PPP4R1-221ENST00000582240 CARMIL1Q5VZK9 1371 aa34.92■■■■□ 3.18
PPP4R1-221ENST00000582240 NUP160Q12769 1436 aa34.91■■■■□ 3.18
PPP4R1-221ENST00000582240 CUL7Q14999 1698 aa34.86■■■■□ 3.17
PPP4R1-221ENST00000582240 CYB5RLQ6IPT4 315 aa34.77■■■■□ 3.16
PPP4R1-221ENST00000582240 FAM9AQ8IZU1 332 aaPredicted RBP34.72■■■■□ 3.15
PPP4R1-221ENST00000582240 ARAP1Q96P48 1450 aa34.7■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms