RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 NISCHQ9Y2I1 1504 aa32.05■■■□□ 2.72
CDK5RAP3-219ENST00000580670 CCDC180Q9P1Z9 1646 aa28.1■■■□□ 2.09
CDK5RAP3-219ENST00000580670 ABCC9O60706 1549 aa26.86■■□□□ 1.89
CDK5RAP3-219ENST00000580670 ZCCHC6Q5VYS8 1495 aaKnown RBP26.85■■□□□ 1.89
CDK5RAP3-219ENST00000580670 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
CDK5RAP3-219ENST00000580670 DCAF1Q9Y4B6 1507 aa26.5■■□□□ 1.83
CDK5RAP3-219ENST00000580670 MYO15BQ96JP2 1530 aa26.31■■□□□ 1.8
CDK5RAP3-219ENST00000580670 NACADO15069 1562 aa26.25■■□□□ 1.79
CDK5RAP3-219ENST00000580670 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
CDK5RAP3-219ENST00000580670 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
CDK5RAP3-219ENST00000580670 SCRIBQ14160 1630 aa25.8■■□□□ 1.72
CDK5RAP3-219ENST00000580670 UNC13AQ9UPW8 1703 aa25.55■■□□□ 1.68
CDK5RAP3-219ENST00000580670 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
CDK5RAP3-219ENST00000580670 PABPN1Q86U42 306 aaKnown RBP eCLIP25.27■■□□□ 1.642e-10■■□□□ 14.3
CDK5RAP3-219ENST00000580670 CECR2Q9BXF3 1484 aa24.92■■□□□ 1.58
CDK5RAP3-219ENST00000580670 BAZ1AQ9NRL2 1556 aaPredicted RBP24.78■■□□□ 1.56
CDK5RAP3-219ENST00000580670 SUPT5HO00267 1087 aaKnown RBP24.77■■□□□ 1.56
CDK5RAP3-219ENST00000580670 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
CDK5RAP3-219ENST00000580670 RSF1Q96T23 1441 aaPredicted RBP24.72■■□□□ 1.55
CDK5RAP3-219ENST00000580670 SMARCA4P51532 1647 aa24.7■■□□□ 1.55
CDK5RAP3-219ENST00000580670 EIF4G1Q04637 1599 aaKnown RBP24.58■■□□□ 1.53
CDK5RAP3-219ENST00000580670 WIZO95785 1651 aa24.52■■□□□ 1.52
CDK5RAP3-219ENST00000580670 PEG3Q9GZU2 1588 aa24.41■■□□□ 1.5
CDK5RAP3-219ENST00000580670 ATAD2BQ9ULI0 1458 aa24.38■■□□□ 1.49
CDK5RAP3-219ENST00000580670 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
CDK5RAP3-219ENST00000580670 CC2D2AQ9P2K1 1620 aa24.3■■□□□ 1.48
CDK5RAP3-219ENST00000580670 TOP2AP11388 1531 aaKnown RBP24.27■■□□□ 1.48
CDK5RAP3-219ENST00000580670 BAZ1BQ9UIG0 1483 aaKnown RBP24.23■■□□□ 1.47
CDK5RAP3-219ENST00000580670 NCAPD3P42695 1498 aa24.23■■□□□ 1.47
CDK5RAP3-219ENST00000580670 HMGXB3Q12766 1538 aa24.17■■□□□ 1.46
CDK5RAP3-219ENST00000580670 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
CDK5RAP3-219ENST00000580670 DNAJC5BQ9UF47 199 aa23.97■■□□□ 1.43
CDK5RAP3-219ENST00000580670 CFTRP13569 1480 aa23.59■■□□□ 1.37
CDK5RAP3-219ENST00000580670 CADPSQ9ULU8 1353 aa23.59■■□□□ 1.37
CDK5RAP3-219ENST00000580670 CHIC1Q5VXU3 224 aa23.53■■□□□ 1.36
CDK5RAP3-219ENST00000580670 NESP48681 1621 aa23.47■■□□□ 1.35
CDK5RAP3-219ENST00000580670 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
CDK5RAP3-219ENST00000580670 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
CDK5RAP3-219ENST00000580670 ABCC8Q09428 1581 aa23.39■■□□□ 1.34
CDK5RAP3-219ENST00000580670 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.32
CDK5RAP3-219ENST00000580670 TRIM41Q8WV44 630 aa23.32■■□□□ 1.32
CDK5RAP3-219ENST00000580670 WRNQ14191 1432 aaPredicted RBP eCLIP23.3■■□□□ 1.32
CDK5RAP3-219ENST00000580670 PDS5BQ9NTI5 1447 aa23.3■■□□□ 1.32
CDK5RAP3-219ENST00000580670 CEP164Q9UPV0 1460 aa23.22■■□□□ 1.31
CDK5RAP3-219ENST00000580670 SYNJ1O43426 1573 aa23.2■■□□□ 1.3
CDK5RAP3-219ENST00000580670 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
CDK5RAP3-219ENST00000580670 CUX1P39880 1505 aa23.16■■□□□ 1.3
CDK5RAP3-219ENST00000580670 TOP2BQ02880 1626 aa23.14■■□□□ 1.3
CDK5RAP3-219ENST00000580670 BIVM-ERCC5R4GMW8 1640 aa23.12■■□□□ 1.29
CDK5RAP3-219ENST00000580670 ERCC6Q03468 1493 aa23.09■■□□□ 1.29
CDK5RAP3-219ENST00000580670 DNMBPQ6XZF7 1577 aa23.06■■□□□ 1.28
CDK5RAP3-219ENST00000580670 URB2Q14146 1524 aaKnown RBP23.04■■□□□ 1.28
CDK5RAP3-219ENST00000580670 TOPBP1Q92547 1522 aa23.04■■□□□ 1.28
CDK5RAP3-219ENST00000580670 MRC2Q9UBG0 1479 aa23.02■■□□□ 1.28
CDK5RAP3-219ENST00000580670 FGD5Q6ZNL6 1462 aa22.96■■□□□ 1.27
CDK5RAP3-219ENST00000580670 WDR62O43379 1518 aa22.9■■□□□ 1.26
CDK5RAP3-219ENST00000580670 THOC2Q8NI27 1593 aaKnown RBP22.9■■□□□ 1.26
CDK5RAP3-219ENST00000580670 POLA1P09884 1462 aaPredicted RBP22.89■■□□□ 1.26
CDK5RAP3-219ENST00000580670 SOGA1O94964 1423 aa22.89■■□□□ 1.25
CDK5RAP3-219ENST00000580670 FAM9AQ8IZU1 332 aaPredicted RBP22.88■■□□□ 1.25
CDK5RAP3-219ENST00000580670 RAD54L2Q9Y4B4 1467 aa22.82■■□□□ 1.24
CDK5RAP3-219ENST00000580670 RUSC2Q8N2Y8 1516 aa22.82■■□□□ 1.24
CDK5RAP3-219ENST00000580670 EEA1Q15075 1411 aa22.8■■□□□ 1.24
CDK5RAP3-219ENST00000580670 CUX2O14529 1486 aa22.76■■□□□ 1.23
CDK5RAP3-219ENST00000580670 ABCA10Q8WWZ4 1543 aa22.76■■□□□ 1.23
CDK5RAP3-219ENST00000580670 KIF27Q86VH2 1401 aa22.75■■□□□ 1.23
CDK5RAP3-219ENST00000580670 TARBP1Q13395 1621 aaKnown RBP22.71■■□□□ 1.23
CDK5RAP3-219ENST00000580670 CSRNP3Q8WYN3 585 aa22.7■■□□□ 1.22
CDK5RAP3-219ENST00000580670 WDR97A6NE52 1622 aa22.7■■□□□ 1.22
CDK5RAP3-219ENST00000580670 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
CDK5RAP3-219ENST00000580670 TDRD9Q8NDG6 1382 aaKnown RBP22.63■■□□□ 1.21
CDK5RAP3-219ENST00000580670 LOC105371045A0A1W2PR82 267 aa22.62■■□□□ 1.21
CDK5RAP3-219ENST00000580670 ABCA5Q8WWZ7 1642 aa22.59■■□□□ 1.21
CDK5RAP3-219ENST00000580670 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
CDK5RAP3-219ENST00000580670 EHMT2Q96KQ7 1210 aa22.57■■□□□ 1.2
CDK5RAP3-219ENST00000580670 IGF1RP08069 1367 aa22.57■■□□□ 1.2
CDK5RAP3-219ENST00000580670 ZNF608Q9ULD9 1512 aaPredicted RBP22.56■■□□□ 1.2
CDK5RAP3-219ENST00000580670 AQRO60306 1485 aaKnown RBP eCLIP22.54■■□□□ 1.29e-9■■■■□ 24.7
CDK5RAP3-219ENST00000580670 KIF21BO75037 1637 aa22.51■■□□□ 1.19
CDK5RAP3-219ENST00000580670 PRXQ9BXM0 1461 aa22.5■■□□□ 1.19
CDK5RAP3-219ENST00000580670 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CDK5RAP3-219ENST00000580670 EIF4G3O43432 1585 aaKnown RBP22.47■■□□□ 1.19
CDK5RAP3-219ENST00000580670 GOLGA3Q08378 1498 aa22.46■■□□□ 1.19
CDK5RAP3-219ENST00000580670 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
CDK5RAP3-219ENST00000580670 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
CDK5RAP3-219ENST00000580670 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
CDK5RAP3-219ENST00000580670 RAPGEF2Q9Y4G8 1499 aa22.45■■□□□ 1.18
CDK5RAP3-219ENST00000580670 CUL7Q14999 1698 aa22.43■■□□□ 1.18
CDK5RAP3-219ENST00000580670 UBTFP17480 764 aaKnown RBP22.4■■□□□ 1.18
CDK5RAP3-219ENST00000580670 SNAPC4Q5SXM2 1469 aa22.33■■□□□ 1.17
CDK5RAP3-219ENST00000580670 TNIKQ9UKE5 1360 aa22.33■■□□□ 1.16
CDK5RAP3-219ENST00000580670 ADAMTS12P58397 1594 aa22.32■■□□□ 1.16
CDK5RAP3-219ENST00000580670 FHAD1B1AJZ9 1412 aa22.32■■□□□ 1.16
CDK5RAP3-219ENST00000580670 MAGI1Q96QZ7 1491 aaPredicted RBP22.3■■□□□ 1.16
CDK5RAP3-219ENST00000580670 SYNJ2O15056 1496 aa22.2■■□□□ 1.15
CDK5RAP3-219ENST00000580670 CEP162Q5TB80 1403 aa22.19■■□□□ 1.14
CDK5RAP3-219ENST00000580670 CHMP7Q8WUX9 453 aaPredicted RBP22.18■■□□□ 1.14
CDK5RAP3-219ENST00000580670 GRIN2AQ12879 1464 aa22.17■■□□□ 1.14
CDK5RAP3-219ENST00000580670 FBLN2P98095 1184 aa22.16■■□□□ 1.14
CDK5RAP3-219ENST00000580670 RANGAP1P46060 587 aaPredicted RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms