RNA–Protein interactions for RNA: ENST00000580654.5

SMARCE1-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-217ENST00000580654 AEBP2Q6ZN18 517 aaPredicted RBP23.34■■□□□ 1.33
SMARCE1-217ENST00000580654 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
SMARCE1-217ENST00000580654 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
SMARCE1-217ENST00000580654 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
SMARCE1-217ENST00000580654 PHF23Q9BUL5 403 aaPredicted RBP19.67■□□□□ 0.74
SMARCE1-217ENST00000580654 ABCC9O60706 1549 aa18.9■□□□□ 0.62
SMARCE1-217ENST00000580654 FOXD1Q16676 465 aa18.73■□□□□ 0.59
SMARCE1-217ENST00000580654 POTEDQ86YR6 584 aa18.39■□□□□ 0.53
SMARCE1-217ENST00000580654 CCDC180Q9P1Z9 1646 aa18.38■□□□□ 0.53
SMARCE1-217ENST00000580654 DNAJC5BQ9UF47 199 aa18.27■□□□□ 0.52
SMARCE1-217ENST00000580654 MSH5O43196 834 aa17.81■□□□□ 0.44
SMARCE1-217ENST00000580654 RB1CC1Q8TDY2 1594 aa17.73■□□□□ 0.43
SMARCE1-217ENST00000580654 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
SMARCE1-217ENST00000580654 NACADO15069 1562 aa17.47■□□□□ 0.39
SMARCE1-217ENST00000580654 UNC13AQ9UPW8 1703 aa17.44■□□□□ 0.38
SMARCE1-217ENST00000580654 PIAS4Q8N2W9 510 aaPredicted RBP17.36■□□□□ 0.37
SMARCE1-217ENST00000580654 BICRAQ9NZM4 1560 aa17.32■□□□□ 0.36
SMARCE1-217ENST00000580654 DNAJC5Q9H3Z4 198 aa17.2■□□□□ 0.34
SMARCE1-217ENST00000580654 DCAF8L2P0C7V8 631 aa17.19■□□□□ 0.34
SMARCE1-217ENST00000580654 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
SMARCE1-217ENST00000580654 CECR2Q9BXF3 1484 aa17.06■□□□□ 0.32
SMARCE1-217ENST00000580654 MYO15BQ96JP2 1530 aa17.06■□□□□ 0.32
SMARCE1-217ENST00000580654 PPP6R1Q9UPN7 881 aa17.02■□□□□ 0.32
SMARCE1-217ENST00000580654 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
SMARCE1-217ENST00000580654 ADRA2BP18089 450 aa16.92■□□□□ 0.3
SMARCE1-217ENST00000580654 SHROOM4Q9ULL8 1493 aa16.92■□□□□ 0.3
SMARCE1-217ENST00000580654 EIF4G1Q04637 1599 aaKnown RBP16.89■□□□□ 0.29
SMARCE1-217ENST00000580654 SCRIBQ14160 1630 aa16.71■□□□□ 0.27
SMARCE1-217ENST00000580654 DCAF1Q9Y4B6 1507 aa16.64■□□□□ 0.25
SMARCE1-217ENST00000580654 ZCCHC6Q5VYS8 1495 aaKnown RBP16.63■□□□□ 0.25
SMARCE1-217ENST00000580654 CUX2O14529 1486 aa16.48■□□□□ 0.23
SMARCE1-217ENST00000580654 ERCC6Q03468 1493 aa16.29■□□□□ 0.2
SMARCE1-217ENST00000580654 NCAPD3P42695 1498 aa16.15■□□□□ 0.18
SMARCE1-217ENST00000580654 NESP48681 1621 aa16.11■□□□□ 0.17
SMARCE1-217ENST00000580654 TRIM41Q8WV44 630 aa16.1■□□□□ 0.17
SMARCE1-217ENST00000580654 THOC2Q8NI27 1593 aaKnown RBP16.08■□□□□ 0.16
SMARCE1-217ENST00000580654 ATAD2BQ9ULI0 1458 aa16.03■□□□□ 0.16
SMARCE1-217ENST00000580654 HMGXB3Q12766 1538 aa15.98■□□□□ 0.15
SMARCE1-217ENST00000580654 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
SMARCE1-217ENST00000580654 KIF21AQ7Z4S6 1674 aa15.9■□□□□ 0.14
SMARCE1-217ENST00000580654 SMARCA4P51532 1647 aa15.89■□□□□ 0.13
SMARCE1-217ENST00000580654 LAMC3Q9Y6N6 1575 aa15.87■□□□□ 0.13
SMARCE1-217ENST00000580654 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
SMARCE1-217ENST00000580654 DMRT2Q9Y5R5 561 aa15.8■□□□□ 0.12
SMARCE1-217ENST00000580654 PDS5BQ9NTI5 1447 aa15.75■□□□□ 0.11
SMARCE1-217ENST00000580654 PEG3Q9GZU2 1588 aa15.75■□□□□ 0.11
SMARCE1-217ENST00000580654 BAZ1AQ9NRL2 1556 aaPredicted RBP15.73■□□□□ 0.11
SMARCE1-217ENST00000580654 MAPK8IP2Q13387 824 aaPredicted RBP15.72■□□□□ 0.11
SMARCE1-217ENST00000580654 WDR62O43379 1518 aa15.69■□□□□ 0.1
SMARCE1-217ENST00000580654 MRC2Q9UBG0 1479 aa15.68■□□□□ 0.1
SMARCE1-217ENST00000580654 CACNB1Q02641 598 aaPredicted RBP15.63■□□□□ 0.09
SMARCE1-217ENST00000580654 CADPSQ9ULU8 1353 aa15.61■□□□□ 0.09
SMARCE1-217ENST00000580654 OSCARQ8IYS5 282 aa15.59■□□□□ 0.09
SMARCE1-217ENST00000580654 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.09
SMARCE1-217ENST00000580654 RIMBP3CA6NJZ7 1639 aa15.55■□□□□ 0.08
SMARCE1-217ENST00000580654 RIMBP3BA6NNM3 1639 aa15.55■□□□□ 0.08
SMARCE1-217ENST00000580654 RIMBP3Q9UFD9 1639 aa15.55■□□□□ 0.08
SMARCE1-217ENST00000580654 SCAF1Q9H7N4 1312 aaKnown RBP15.55■□□□□ 0.08
SMARCE1-217ENST00000580654 CEP164Q9UPV0 1460 aa15.49■□□□□ 0.07
SMARCE1-217ENST00000580654 FANCD2Q9BXW9 1451 aa15.44■□□□□ 0.06
SMARCE1-217ENST00000580654 ARHGEF11O15085 1522 aa15.43■□□□□ 0.06
SMARCE1-217ENST00000580654 URB2Q14146 1524 aaKnown RBP15.39■□□□□ 0.05
SMARCE1-217ENST00000580654 WIZO95785 1651 aa15.38■□□□□ 0.05
SMARCE1-217ENST00000580654 CFTRP13569 1480 aa15.33■□□□□ 0.05
SMARCE1-217ENST00000580654 ZNF608Q9ULD9 1512 aaPredicted RBP15.29■□□□□ 0.04
SMARCE1-217ENST00000580654 CYB5RLQ6IPT4 315 aa15.29■□□□□ 0.04
SMARCE1-217ENST00000580654 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-217ENST00000580654 ARAP1Q96P48 1450 aa15.25■□□□□ 0.03
SMARCE1-217ENST00000580654 IFT140Q96RY7 1462 aa15.2■□□□□ 0.02
SMARCE1-217ENST00000580654 CHD1O14646 1710 aa15.2■□□□□ 0.02
SMARCE1-217ENST00000580654 PRDM2Q13029 1718 aa15.19■□□□□ 0.02
SMARCE1-217ENST00000580654 EIF4G3O43432 1585 aaKnown RBP15.18■□□□□ 0.02
SMARCE1-217ENST00000580654 DCAF8L1A6NGE4 600 aa15.13■□□□□ 0.01
SMARCE1-217ENST00000580654 RNF39Q9H2S5 420 aa15.13■□□□□ 0.01
SMARCE1-217ENST00000580654 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
SMARCE1-217ENST00000580654 TOPBP1Q92547 1522 aa15.11■□□□□ 0.01
SMARCE1-217ENST00000580654 RSF1Q96T23 1441 aaPredicted RBP15.1■□□□□ 0.01
SMARCE1-217ENST00000580654 AQRO60306 1485 aaKnown RBP eCLIP15.06■□□□□ 05e-8■■■□□ 18.8
SMARCE1-217ENST00000580654 TARBP1Q13395 1621 aaKnown RBP15.05■□□□□ -0
SMARCE1-217ENST00000580654 DNMBPQ6XZF7 1577 aa15□□□□□ -0.01
SMARCE1-217ENST00000580654 CLASP1Q7Z460 1538 aa14.99□□□□□ -0.01
SMARCE1-217ENST00000580654 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
SMARCE1-217ENST00000580654 FBLN2P98095 1184 aa14.99□□□□□ -0.01
SMARCE1-217ENST00000580654 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
SMARCE1-217ENST00000580654 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
SMARCE1-217ENST00000580654 POLA1P09884 1462 aaPredicted RBP14.91□□□□□ -0.02
SMARCE1-217ENST00000580654 SNAPC4Q5SXM2 1469 aa14.89□□□□□ -0.03
SMARCE1-217ENST00000580654 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
SMARCE1-217ENST00000580654 C1QBPQ07021 282 aaKnown RBP14.88□□□□□ -0.03
SMARCE1-217ENST00000580654 SYNJ1O43426 1573 aa14.87□□□□□ -0.03
SMARCE1-217ENST00000580654 TDRD9Q8NDG6 1382 aaKnown RBP14.85□□□□□ -0.03
SMARCE1-217ENST00000580654 GAPVD1Q14C86 1478 aa14.82□□□□□ -0.04
SMARCE1-217ENST00000580654 SOGA1O94964 1423 aa14.8□□□□□ -0.04
SMARCE1-217ENST00000580654 MAGI1Q96QZ7 1491 aaPredicted RBP14.8□□□□□ -0.04
SMARCE1-217ENST00000580654 WDR97A6NE52 1622 aa14.8□□□□□ -0.04
SMARCE1-217ENST00000580654 PPP4R3CPQ6ZMV5 832 aa14.79□□□□□ -0.04
SMARCE1-217ENST00000580654 CHMP7Q8WUX9 453 aaPredicted RBP14.78□□□□□ -0.04
SMARCE1-217ENST00000580654 ILDR1Q86SU0 546 aaPredicted RBP14.77□□□□□ -0.05
SMARCE1-217ENST00000580654 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
SMARCE1-217ENST00000580654 ERCC6L2Q5T890 1561 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms