RNA–Protein interactions for RNA: ENST00000579040.5

SSH2-208, Transcript of slingshot protein phosphatase 2, humanhuman

TSL 1 (best)

Gene SSH2, Length 965 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH2-208ENST00000579040 NISCHQ9Y2I1 1504 aa28.72■■■□□ 2.19
SSH2-208ENST00000579040 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
SSH2-208ENST00000579040 ABCC9O60706 1549 aa25.45■■□□□ 1.66
SSH2-208ENST00000579040 RB1CC1Q8TDY2 1594 aa24.41■■□□□ 1.5
SSH2-208ENST00000579040 NACADO15069 1562 aa24.29■■□□□ 1.48
SSH2-208ENST00000579040 MYO15BQ96JP2 1530 aa24.05■■□□□ 1.44
SSH2-208ENST00000579040 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
SSH2-208ENST00000579040 UNC13AQ9UPW8 1703 aa23.88■■□□□ 1.41
SSH2-208ENST00000579040 ZCCHC6Q5VYS8 1495 aaKnown RBP23.86■■□□□ 1.41
SSH2-208ENST00000579040 DCAF1Q9Y4B6 1507 aa23.79■■□□□ 1.4
SSH2-208ENST00000579040 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
SSH2-208ENST00000579040 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
SSH2-208ENST00000579040 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
SSH2-208ENST00000579040 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
SSH2-208ENST00000579040 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
SSH2-208ENST00000579040 EIF4G1Q04637 1599 aaKnown RBP23.06■■□□□ 1.28
SSH2-208ENST00000579040 CC2D2AQ9P2K1 1620 aa23.05■■□□□ 1.28
SSH2-208ENST00000579040 CECR2Q9BXF3 1484 aa22.93■■□□□ 1.26
SSH2-208ENST00000579040 SMARCA4P51532 1647 aa22.39■■□□□ 1.17
SSH2-208ENST00000579040 NCAPD3P42695 1498 aa22.38■■□□□ 1.17
SSH2-208ENST00000579040 ATAD2BQ9ULI0 1458 aa22.33■■□□□ 1.16
SSH2-208ENST00000579040 SMARCA2P51531 1590 aa22.33■■□□□ 1.16
SSH2-208ENST00000579040 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
SSH2-208ENST00000579040 HMGXB3Q12766 1538 aa22.28■■□□□ 1.16
SSH2-208ENST00000579040 PEG3Q9GZU2 1588 aa22.2■■□□□ 1.14
SSH2-208ENST00000579040 BAZ1BQ9UIG0 1483 aaKnown RBP22.14■■□□□ 1.13
SSH2-208ENST00000579040 MROH2BQ7Z745 1585 aa22.11■■□□□ 1.13
SSH2-208ENST00000579040 ERCC6Q03468 1493 aa21.99■■□□□ 1.11
SSH2-208ENST00000579040 CUX2O14529 1486 aa21.94■■□□□ 1.1
SSH2-208ENST00000579040 NESP48681 1621 aa21.91■■□□□ 1.1
SSH2-208ENST00000579040 LAMC3Q9Y6N6 1575 aa21.89■■□□□ 1.09
SSH2-208ENST00000579040 WIZO95785 1651 aa21.87■■□□□ 1.09
SSH2-208ENST00000579040 THOC2Q8NI27 1593 aaKnown RBP21.73■■□□□ 1.07
SSH2-208ENST00000579040 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
SSH2-208ENST00000579040 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
SSH2-208ENST00000579040 PDS5BQ9NTI5 1447 aa21.72■■□□□ 1.07
SSH2-208ENST00000579040 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
SSH2-208ENST00000579040 TOP2AP11388 1531 aaKnown RBP21.64■■□□□ 1.05
SSH2-208ENST00000579040 DNAJC5Q9H3Z4 198 aa21.63■■□□□ 1.05
SSH2-208ENST00000579040 MRC2Q9UBG0 1479 aa21.52■■□□□ 1.04
SSH2-208ENST00000579040 CFTRP13569 1480 aa21.5■■□□□ 1.03
SSH2-208ENST00000579040 WDR62O43379 1518 aa21.48■■□□□ 1.03
SSH2-208ENST00000579040 CEP164Q9UPV0 1460 aa21.47■■□□□ 1.03
SSH2-208ENST00000579040 FANCD2Q9BXW9 1451 aa21.45■■□□□ 1.03
SSH2-208ENST00000579040 PRDM2Q13029 1718 aa21.42■■□□□ 1.02
SSH2-208ENST00000579040 CCDC88BA6NC98 1476 aa21.33■■□□□ 1.01
SSH2-208ENST00000579040 URB2Q14146 1524 aaKnown RBP21.26■□□□□ 0.99
SSH2-208ENST00000579040 ABCC8Q09428 1581 aa21.09■□□□□ 0.97
SSH2-208ENST00000579040 TOPBP1Q92547 1522 aa21.08■□□□□ 0.96
SSH2-208ENST00000579040 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
SSH2-208ENST00000579040 IFT140Q96RY7 1462 aa21.04■□□□□ 0.96
SSH2-208ENST00000579040 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
SSH2-208ENST00000579040 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
SSH2-208ENST00000579040 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.94
SSH2-208ENST00000579040 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.94
SSH2-208ENST00000579040 POLA1P09884 1462 aaPredicted RBP20.86■□□□□ 0.93
SSH2-208ENST00000579040 SUPT5HO00267 1087 aaKnown RBP20.81■□□□□ 0.92
SSH2-208ENST00000579040 CUX1P39880 1505 aa20.78■□□□□ 0.92
SSH2-208ENST00000579040 WDR97A6NE52 1622 aa20.77■□□□□ 0.92
SSH2-208ENST00000579040 AQRO60306 1485 aaKnown RBP eCLIP20.76■□□□□ 0.91
SSH2-208ENST00000579040 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
SSH2-208ENST00000579040 SOGA1O94964 1423 aa20.75■□□□□ 0.91
SSH2-208ENST00000579040 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
SSH2-208ENST00000579040 CHD1O14646 1710 aa20.73■□□□□ 0.91
SSH2-208ENST00000579040 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
SSH2-208ENST00000579040 TDRD9Q8NDG6 1382 aaKnown RBP20.66■□□□□ 0.9
SSH2-208ENST00000579040 RIMBP3CA6NJZ7 1639 aa20.65■□□□□ 0.9
SSH2-208ENST00000579040 RIMBP3BA6NNM3 1639 aa20.65■□□□□ 0.9
SSH2-208ENST00000579040 RIMBP3Q9UFD9 1639 aa20.65■□□□□ 0.9
SSH2-208ENST00000579040 ARHGEF11O15085 1522 aa20.59■□□□□ 0.89
SSH2-208ENST00000579040 SNAPC4Q5SXM2 1469 aa20.59■□□□□ 0.89
SSH2-208ENST00000579040 MAGI1Q96QZ7 1491 aaPredicted RBP20.59■□□□□ 0.89
SSH2-208ENST00000579040 GRIN2BQ13224 1484 aa20.58■□□□□ 0.89
SSH2-208ENST00000579040 PBRM1Q86U86 1689 aa20.57■□□□□ 0.88
SSH2-208ENST00000579040 ABCA10Q8WWZ4 1543 aa20.56■□□□□ 0.88
SSH2-208ENST00000579040 FBLN2P98095 1184 aa20.55■□□□□ 0.88
SSH2-208ENST00000579040 BIVM-ERCC5R4GMW8 1640 aa20.55■□□□□ 0.88
SSH2-208ENST00000579040 TOP2BQ02880 1626 aa20.53■□□□□ 0.88
SSH2-208ENST00000579040 ABCA5Q8WWZ7 1642 aa20.53■□□□□ 0.88
SSH2-208ENST00000579040 GAPVD1Q14C86 1478 aa20.53■□□□□ 0.88
SSH2-208ENST00000579040 WRNQ14191 1432 aaPredicted RBP eCLIP20.5■□□□□ 0.87
SSH2-208ENST00000579040 SYNJ2O15056 1496 aa20.5■□□□□ 0.87
SSH2-208ENST00000579040 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
SSH2-208ENST00000579040 CHMP7Q8WUX9 453 aaPredicted RBP20.47■□□□□ 0.87
SSH2-208ENST00000579040 CLASP1Q7Z460 1538 aa20.47■□□□□ 0.87
SSH2-208ENST00000579040 ARAP1Q96P48 1450 aa20.39■□□□□ 0.85
SSH2-208ENST00000579040 ADAMTS12P58397 1594 aa20.36■□□□□ 0.85
SSH2-208ENST00000579040 CYB5RLQ6IPT4 315 aa20.35■□□□□ 0.85
SSH2-208ENST00000579040 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
SSH2-208ENST00000579040 GRIN2AQ12879 1464 aa20.32■□□□□ 0.84
SSH2-208ENST00000579040 FHAD1B1AJZ9 1412 aa20.28■□□□□ 0.84
SSH2-208ENST00000579040 NUP160Q12769 1436 aa20.25■□□□□ 0.83
SSH2-208ENST00000579040 CEP170Q5SW79 1584 aa20.23■□□□□ 0.83
SSH2-208ENST00000579040 SHROOM2Q13796 1616 aa20.18■□□□□ 0.82
SSH2-208ENST00000579040 ERCC6L2Q5T890 1561 aa20.11■□□□□ 0.81
SSH2-208ENST00000579040 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
SSH2-208ENST00000579040 CUL7Q14999 1698 aa20.1■□□□□ 0.81
SSH2-208ENST00000579040 TRHP20396 242 aaPredicted RBP20.07■□□□□ 0.8
SSH2-208ENST00000579040 RUSC2Q8N2Y8 1516 aa20.07■□□□□ 0.8
SSH2-208ENST00000579040 IGF1RP08069 1367 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms