RNA–Protein interactions for RNA: ENST00000578773.1

GGA3-206, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 432 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-206ENST00000578773 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
GGA3-206ENST00000578773 ABCC9O60706 1549 aa27.72■■■□□ 2.03
GGA3-206ENST00000578773 DNAJC5BQ9UF47 199 aa26.87■■□□□ 1.89
GGA3-206ENST00000578773 CCDC180Q9P1Z9 1646 aa26.79■■□□□ 1.88
GGA3-206ENST00000578773 RB1CC1Q8TDY2 1594 aa25.87■■□□□ 1.73
GGA3-206ENST00000578773 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
GGA3-206ENST00000578773 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
GGA3-206ENST00000578773 NACADO15069 1562 aa25.43■■□□□ 1.66
GGA3-206ENST00000578773 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
GGA3-206ENST00000578773 DNAJC5Q9H3Z4 198 aa25.15■■□□□ 1.62
GGA3-206ENST00000578773 DCAF8L2P0C7V8 631 aa25.1■■□□□ 1.61
GGA3-206ENST00000578773 CC2D2AQ9P2K1 1620 aa25.02■■□□□ 1.6
GGA3-206ENST00000578773 CECR2Q9BXF3 1484 aa24.99■■□□□ 1.59
GGA3-206ENST00000578773 EIF4G1Q04637 1599 aaKnown RBP24.69■■□□□ 1.54
GGA3-206ENST00000578773 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
GGA3-206ENST00000578773 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
GGA3-206ENST00000578773 SCRIBQ14160 1630 aa24.46■■□□□ 1.51
GGA3-206ENST00000578773 ZCCHC6Q5VYS8 1495 aaKnown RBP24.14■■□□□ 1.46
GGA3-206ENST00000578773 CUX2O14529 1486 aa24.12■■□□□ 1.45
GGA3-206ENST00000578773 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.45
GGA3-206ENST00000578773 ERCC6Q03468 1493 aa23.87■■□□□ 1.41
GGA3-206ENST00000578773 TRIM41Q8WV44 630 aa23.75■■□□□ 1.39
GGA3-206ENST00000578773 NESP48681 1621 aa23.62■■□□□ 1.37
GGA3-206ENST00000578773 THOC2Q8NI27 1593 aaKnown RBP23.57■■□□□ 1.36
GGA3-206ENST00000578773 NCAPD3P42695 1498 aa23.47■■□□□ 1.35
GGA3-206ENST00000578773 KIF21AQ7Z4S6 1674 aa23.36■■□□□ 1.33
GGA3-206ENST00000578773 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
GGA3-206ENST00000578773 ATAD2BQ9ULI0 1458 aa23.34■■□□□ 1.33
GGA3-206ENST00000578773 HMGXB3Q12766 1538 aa23.27■■□□□ 1.32
GGA3-206ENST00000578773 SMARCA4P51532 1647 aa23.17■■□□□ 1.3
GGA3-206ENST00000578773 LAMC3Q9Y6N6 1575 aa23.14■■□□□ 1.3
GGA3-206ENST00000578773 BAZ1AQ9NRL2 1556 aaPredicted RBP23.1■■□□□ 1.29
GGA3-206ENST00000578773 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
GGA3-206ENST00000578773 PDS5BQ9NTI5 1447 aa22.92■■□□□ 1.26
GGA3-206ENST00000578773 WDR62O43379 1518 aa22.92■■□□□ 1.26
GGA3-206ENST00000578773 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
GGA3-206ENST00000578773 RIMBP3CA6NJZ7 1639 aa22.88■■□□□ 1.25
GGA3-206ENST00000578773 RIMBP3BA6NNM3 1639 aa22.88■■□□□ 1.25
GGA3-206ENST00000578773 RIMBP3Q9UFD9 1639 aa22.88■■□□□ 1.25
GGA3-206ENST00000578773 PEG3Q9GZU2 1588 aa22.87■■□□□ 1.25
GGA3-206ENST00000578773 OSCARQ8IYS5 282 aa22.78■■□□□ 1.24
GGA3-206ENST00000578773 MROH2BQ7Z745 1585 aa22.7■■□□□ 1.22
GGA3-206ENST00000578773 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
GGA3-206ENST00000578773 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
GGA3-206ENST00000578773 CEP164Q9UPV0 1460 aa22.61■■□□□ 1.21
GGA3-206ENST00000578773 FANCD2Q9BXW9 1451 aa22.52■■□□□ 1.2
GGA3-206ENST00000578773 URB2Q14146 1524 aaKnown RBP22.49■■□□□ 1.19
GGA3-206ENST00000578773 WIZO95785 1651 aa22.46■■□□□ 1.19
GGA3-206ENST00000578773 TRHP20396 242 aaPredicted RBP22.43■■□□□ 1.18
GGA3-206ENST00000578773 CYB5RLQ6IPT4 315 aa22.4■■□□□ 1.18
GGA3-206ENST00000578773 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
GGA3-206ENST00000578773 AEBP2Q6ZN18 517 aaPredicted RBP22.38■■□□□ 1.17
GGA3-206ENST00000578773 ARAP1Q96P48 1450 aa22.37■■□□□ 1.17
GGA3-206ENST00000578773 CHD1O14646 1710 aa22.34■■□□□ 1.17
GGA3-206ENST00000578773 CFTRP13569 1480 aa22.28■■□□□ 1.16
GGA3-206ENST00000578773 EIF4G3O43432 1585 aaKnown RBP22.23■■□□□ 1.15
GGA3-206ENST00000578773 PRDM2Q13029 1718 aa22.22■■□□□ 1.15
GGA3-206ENST00000578773 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
GGA3-206ENST00000578773 TOPBP1Q92547 1522 aa22.03■■□□□ 1.12
GGA3-206ENST00000578773 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
GGA3-206ENST00000578773 AQRO60306 1485 aaKnown RBP eCLIP22■■□□□ 1.11
GGA3-206ENST00000578773 TARBP1Q13395 1621 aaKnown RBP21.98■■□□□ 1.11
GGA3-206ENST00000578773 TOP2AP11388 1531 aaKnown RBP21.96■■□□□ 1.11
GGA3-206ENST00000578773 FBLN2P98095 1184 aa21.93■■□□□ 1.1
GGA3-206ENST00000578773 CLASP1Q7Z460 1538 aa21.92■■□□□ 1.1
GGA3-206ENST00000578773 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
GGA3-206ENST00000578773 SNAPC4Q5SXM2 1469 aa21.76■■□□□ 1.07
GGA3-206ENST00000578773 POLA1P09884 1462 aaPredicted RBP21.74■■□□□ 1.07
GGA3-206ENST00000578773 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
GGA3-206ENST00000578773 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
GGA3-206ENST00000578773 SYNJ1O43426 1573 aa21.73■■□□□ 1.07
GGA3-206ENST00000578773 ILDR1Q86SU0 546 aaPredicted RBP21.72■■□□□ 1.07
GGA3-206ENST00000578773 ABCC8Q09428 1581 aa21.71■■□□□ 1.07
GGA3-206ENST00000578773 TDRD9Q8NDG6 1382 aaKnown RBP21.68■■□□□ 1.06
GGA3-206ENST00000578773 KIF13AQ9H1H9 1805 aa21.68■■□□□ 1.06
GGA3-206ENST00000578773 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
GGA3-206ENST00000578773 ERCC6L2Q5T890 1561 aa21.65■■□□□ 1.06
GGA3-206ENST00000578773 CHMP7Q8WUX9 453 aaPredicted RBP21.55■■□□□ 1.04
GGA3-206ENST00000578773 PBRM1Q86U86 1689 aa21.55■■□□□ 1.04
GGA3-206ENST00000578773 MAGI1Q96QZ7 1491 aaPredicted RBP21.54■■□□□ 1.04
GGA3-206ENST00000578773 SOGA1O94964 1423 aa21.54■■□□□ 1.04
GGA3-206ENST00000578773 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
GGA3-206ENST00000578773 SYNJ2O15056 1496 aa21.51■■□□□ 1.03
GGA3-206ENST00000578773 FGD5Q6ZNL6 1462 aa21.49■■□□□ 1.03
GGA3-206ENST00000578773 GRIN2BQ13224 1484 aa21.45■■□□□ 1.03
GGA3-206ENST00000578773 KDM4FA0A1W2PPD8 638 aa21.43■■□□□ 1.02
GGA3-206ENST00000578773 CEP170Q5SW79 1584 aa21.38■■□□□ 1.01
GGA3-206ENST00000578773 CUX1P39880 1505 aa21.38■■□□□ 1.01
GGA3-206ENST00000578773 SHROOM2Q13796 1616 aa21.3■■□□□ 1
GGA3-206ENST00000578773 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
GGA3-206ENST00000578773 TSPOAP1O95153 1857 aa21.28■■□□□ 1
GGA3-206ENST00000578773 KDM6BO15054 1643 aa21.25■□□□□ 0.99
GGA3-206ENST00000578773 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
GGA3-206ENST00000578773 DIP2BQ9P265 1576 aa21.23■□□□□ 0.99
GGA3-206ENST00000578773 ADAMTS12P58397 1594 aa21.2■□□□□ 0.98
GGA3-206ENST00000578773 NUP160Q12769 1436 aa21.19■□□□□ 0.98
GGA3-206ENST00000578773 ABCC10Q5T3U5 1492 aa21.18■□□□□ 0.98
GGA3-206ENST00000578773 FAM69CQ0P6D2 419 aa21.16■□□□□ 0.98
GGA3-206ENST00000578773 HECW2Q9P2P5 1572 aa21.13■□□□□ 0.97
GGA3-206ENST00000578773 ABCA10Q8WWZ4 1543 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms