RNA–Protein interactions for RNA: ENST00000578240.1

CTC1-203, Transcript of CST telomere replication complex component 1, humanhuman

TSL 2

Gene CTC1, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1-203ENST00000578240 NISCHQ9Y2I1 1504 aa30.61■■■□□ 2.49
CTC1-203ENST00000578240 CCDC180Q9P1Z9 1646 aa26.94■■□□□ 1.9
CTC1-203ENST00000578240 ABCC9O60706 1549 aa25.74■■□□□ 1.71
CTC1-203ENST00000578240 ZCCHC6Q5VYS8 1495 aaKnown RBP25.73■■□□□ 1.71
CTC1-203ENST00000578240 DCAF1Q9Y4B6 1507 aa25.34■■□□□ 1.65
CTC1-203ENST00000578240 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
CTC1-203ENST00000578240 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
CTC1-203ENST00000578240 NACADO15069 1562 aa24.99■■□□□ 1.59
CTC1-203ENST00000578240 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.56
CTC1-203ENST00000578240 SHROOM4Q9ULL8 1493 aa24.69■■□□□ 1.54
CTC1-203ENST00000578240 SCRIBQ14160 1630 aa24.65■■□□□ 1.54
CTC1-203ENST00000578240 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
CTC1-203ENST00000578240 BICRAQ9NZM4 1560 aa24.2■■□□□ 1.47
CTC1-203ENST00000578240 PABPN1Q86U42 306 aaKnown RBP eCLIP23.99■■□□□ 1.43
CTC1-203ENST00000578240 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
CTC1-203ENST00000578240 DNAJC5BQ9UF47 199 aa23.79■■□□□ 1.4
CTC1-203ENST00000578240 MROH2BQ7Z745 1585 aa23.67■■□□□ 1.38
CTC1-203ENST00000578240 SMARCA4P51532 1647 aa23.66■■□□□ 1.38
CTC1-203ENST00000578240 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
CTC1-203ENST00000578240 RSF1Q96T23 1441 aaPredicted RBP23.62■■□□□ 1.37
CTC1-203ENST00000578240 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
CTC1-203ENST00000578240 WIZO95785 1651 aa23.53■■□□□ 1.36
CTC1-203ENST00000578240 EIF4G1Q04637 1599 aaKnown RBP23.42■■□□□ 1.34
CTC1-203ENST00000578240 PEG3Q9GZU2 1588 aa23.39■■□□□ 1.33
CTC1-203ENST00000578240 CC2D2AQ9P2K1 1620 aa23.28■■□□□ 1.32
CTC1-203ENST00000578240 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
CTC1-203ENST00000578240 ATAD2BQ9ULI0 1458 aa23.2■■□□□ 1.3
CTC1-203ENST00000578240 SMARCA2P51531 1590 aa23.2■■□□□ 1.3
CTC1-203ENST00000578240 HMGXB3Q12766 1538 aa23.07■■□□□ 1.28
CTC1-203ENST00000578240 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
CTC1-203ENST00000578240 NCAPD3P42695 1498 aa23.01■■□□□ 1.27
CTC1-203ENST00000578240 CCDC88BA6NC98 1476 aa22.91■■□□□ 1.26
CTC1-203ENST00000578240 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
CTC1-203ENST00000578240 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
CTC1-203ENST00000578240 CFTRP13569 1480 aa22.47■■□□□ 1.19
CTC1-203ENST00000578240 ABCC8Q09428 1581 aa22.45■■□□□ 1.19
CTC1-203ENST00000578240 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
CTC1-203ENST00000578240 LAMC3Q9Y6N6 1575 aa22.34■■□□□ 1.17
CTC1-203ENST00000578240 NESP48681 1621 aa22.34■■□□□ 1.17
CTC1-203ENST00000578240 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
CTC1-203ENST00000578240 ERCC6Q03468 1493 aa22.24■■□□□ 1.15
CTC1-203ENST00000578240 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
CTC1-203ENST00000578240 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
CTC1-203ENST00000578240 WRNQ14191 1432 aaPredicted RBP eCLIP22.2■■□□□ 1.14
CTC1-203ENST00000578240 TOP2BQ02880 1626 aa22.19■■□□□ 1.14
CTC1-203ENST00000578240 FANCD2Q9BXW9 1451 aa22.16■■□□□ 1.14
CTC1-203ENST00000578240 CUX1P39880 1505 aa22.15■■□□□ 1.14
CTC1-203ENST00000578240 TRIM41Q8WV44 630 aa22.13■■□□□ 1.13
CTC1-203ENST00000578240 CUX2O14529 1486 aa22.09■■□□□ 1.13
CTC1-203ENST00000578240 CEP164Q9UPV0 1460 aa22.05■■□□□ 1.12
CTC1-203ENST00000578240 DNMBPQ6XZF7 1577 aa22.01■■□□□ 1.11
CTC1-203ENST00000578240 PDS5BQ9NTI5 1447 aa22.01■■□□□ 1.11
CTC1-203ENST00000578240 URB2Q14146 1524 aaKnown RBP21.97■■□□□ 1.11
CTC1-203ENST00000578240 TOPBP1Q92547 1522 aa21.95■■□□□ 1.1
CTC1-203ENST00000578240 THOC2Q8NI27 1593 aaKnown RBP21.93■■□□□ 1.1
CTC1-203ENST00000578240 FGD5Q6ZNL6 1462 aa21.89■■□□□ 1.09
CTC1-203ENST00000578240 SOGA1O94964 1423 aa21.88■■□□□ 1.09
CTC1-203ENST00000578240 RUSC2Q8N2Y8 1516 aa21.87■■□□□ 1.09
CTC1-203ENST00000578240 WDR97A6NE52 1622 aa21.87■■□□□ 1.09
CTC1-203ENST00000578240 MRC2Q9UBG0 1479 aa21.84■■□□□ 1.09
CTC1-203ENST00000578240 POLA1P09884 1462 aaPredicted RBP21.83■■□□□ 1.08
CTC1-203ENST00000578240 WDR62O43379 1518 aa21.82■■□□□ 1.08
CTC1-203ENST00000578240 DNAJC5Q9H3Z4 198 aa21.81■■□□□ 1.08
CTC1-203ENST00000578240 EEA1Q15075 1411 aa21.75■■□□□ 1.07
CTC1-203ENST00000578240 TARBP1Q13395 1621 aaKnown RBP21.74■■□□□ 1.07
CTC1-203ENST00000578240 FAM9AQ8IZU1 332 aaPredicted RBP21.73■■□□□ 1.07
CTC1-203ENST00000578240 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
CTC1-203ENST00000578240 ABCA10Q8WWZ4 1543 aa21.7■■□□□ 1.06
CTC1-203ENST00000578240 ABCA5Q8WWZ7 1642 aa21.67■■□□□ 1.06
CTC1-203ENST00000578240 KIF21BO75037 1637 aa21.66■■□□□ 1.06
CTC1-203ENST00000578240 KIF27Q86VH2 1401 aa21.61■■□□□ 1.05
CTC1-203ENST00000578240 LOC105371045A0A1W2PR82 267 aa21.6■■□□□ 1.05
CTC1-203ENST00000578240 PBRM1Q86U86 1689 aa21.58■■□□□ 1.04
CTC1-203ENST00000578240 CSRNP3Q8WYN3 585 aa21.54■■□□□ 1.04
CTC1-203ENST00000578240 PRXQ9BXM0 1461 aa21.52■■□□□ 1.04
CTC1-203ENST00000578240 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
CTC1-203ENST00000578240 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
CTC1-203ENST00000578240 EIF4G3O43432 1585 aaKnown RBP21.49■■□□□ 1.03
CTC1-203ENST00000578240 CUL7Q14999 1698 aa21.48■■□□□ 1.03
CTC1-203ENST00000578240 GOLGA3Q08378 1498 aa21.48■■□□□ 1.03
CTC1-203ENST00000578240 RAPGEF2Q9Y4G8 1499 aa21.48■■□□□ 1.03
CTC1-203ENST00000578240 ZNF608Q9ULD9 1512 aaPredicted RBP21.46■■□□□ 1.03
CTC1-203ENST00000578240 GAPVD1Q14C86 1478 aa21.44■■□□□ 1.02
CTC1-203ENST00000578240 IGF1RP08069 1367 aa21.44■■□□□ 1.02
CTC1-203ENST00000578240 TDRD9Q8NDG6 1382 aaKnown RBP21.44■■□□□ 1.02
CTC1-203ENST00000578240 EHMT2Q96KQ7 1210 aa21.42■■□□□ 1.02
CTC1-203ENST00000578240 AQRO60306 1485 aaKnown RBP eCLIP21.38■■□□□ 1.01
CTC1-203ENST00000578240 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
CTC1-203ENST00000578240 TNIKQ9UKE5 1360 aa21.33■■□□□ 1.01
CTC1-203ENST00000578240 CTTNBP2Q8WZ74 1663 aa21.32■■□□□ 1
CTC1-203ENST00000578240 CARMIL1Q5VZK9 1371 aa21.31■■□□□ 1
CTC1-203ENST00000578240 GRIN2BQ13224 1484 aa21.3■■□□□ 1
CTC1-203ENST00000578240 CEP162Q5TB80 1403 aa21.26■□□□□ 0.99
CTC1-203ENST00000578240 SNAPC4Q5SXM2 1469 aa21.23■□□□□ 0.99
CTC1-203ENST00000578240 FHAD1B1AJZ9 1412 aa21.19■□□□□ 0.98
CTC1-203ENST00000578240 UBTFP17480 764 aaKnown RBP21.18■□□□□ 0.98
CTC1-203ENST00000578240 MAGI1Q96QZ7 1491 aaPredicted RBP21.18■□□□□ 0.98
CTC1-203ENST00000578240 CHD1O14646 1710 aa21.13■□□□□ 0.97
CTC1-203ENST00000578240 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
CTC1-203ENST00000578240 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms