RNA–Protein interactions for RNA: ENST00000578112.5

SMARCE1-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 2,384 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-214ENST00000578112 NISCHQ9Y2I1 1504 aa28.51■■■□□ 2.15
SMARCE1-214ENST00000578112 CCDC180Q9P1Z9 1646 aa25.82■■□□□ 1.72
SMARCE1-214ENST00000578112 ABCC9O60706 1549 aa25.53■■□□□ 1.68
SMARCE1-214ENST00000578112 RB1CC1Q8TDY2 1594 aa24.52■■□□□ 1.52
SMARCE1-214ENST00000578112 NACADO15069 1562 aa24.38■■□□□ 1.49
SMARCE1-214ENST00000578112 MYO15BQ96JP2 1530 aa24.14■■□□□ 1.45
SMARCE1-214ENST00000578112 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
SMARCE1-214ENST00000578112 UNC13AQ9UPW8 1703 aa23.87■■□□□ 1.41
SMARCE1-214ENST00000578112 DCAF1Q9Y4B6 1507 aa23.75■■□□□ 1.39
SMARCE1-214ENST00000578112 SHROOM4Q9ULL8 1493 aa23.71■■□□□ 1.39
SMARCE1-214ENST00000578112 BICRAQ9NZM4 1560 aa23.71■■□□□ 1.39
SMARCE1-214ENST00000578112 DCAF8L2P0C7V8 631 aa23.7■■□□□ 1.38
SMARCE1-214ENST00000578112 ZCCHC6Q5VYS8 1495 aaKnown RBP23.63■■□□□ 1.37
SMARCE1-214ENST00000578112 PABPN1Q86U42 306 aaKnown RBP eCLIP23.62■■□□□ 1.37
SMARCE1-214ENST00000578112 SCRIBQ14160 1630 aa23.21■■□□□ 1.31
SMARCE1-214ENST00000578112 CC2D2AQ9P2K1 1620 aa23.18■■□□□ 1.3
SMARCE1-214ENST00000578112 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
SMARCE1-214ENST00000578112 CECR2Q9BXF3 1484 aa23.11■■□□□ 1.29
SMARCE1-214ENST00000578112 NCAPD3P42695 1498 aa22.45■■□□□ 1.18
SMARCE1-214ENST00000578112 HMGXB3Q12766 1538 aa22.33■■□□□ 1.17
SMARCE1-214ENST00000578112 CUX2O14529 1486 aa22.33■■□□□ 1.16
SMARCE1-214ENST00000578112 SMARCA2P51531 1590 aa22.32■■□□□ 1.16
SMARCE1-214ENST00000578112 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
SMARCE1-214ENST00000578112 SMARCA4P51532 1647 aa22.27■■□□□ 1.15
SMARCE1-214ENST00000578112 DNAJC5Q9H3Z4 198 aa22.23■■□□□ 1.15
SMARCE1-214ENST00000578112 BAZ1AQ9NRL2 1556 aaPredicted RBP22.19■■□□□ 1.14
SMARCE1-214ENST00000578112 PEG3Q9GZU2 1588 aa22.18■■□□□ 1.14
SMARCE1-214ENST00000578112 ERCC6Q03468 1493 aa22.14■■□□□ 1.13
SMARCE1-214ENST00000578112 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
SMARCE1-214ENST00000578112 LAMC3Q9Y6N6 1575 aa21.99■■□□□ 1.11
SMARCE1-214ENST00000578112 THOC2Q8NI27 1593 aaKnown RBP21.89■■□□□ 1.09
SMARCE1-214ENST00000578112 NESP48681 1621 aa21.87■■□□□ 1.09
SMARCE1-214ENST00000578112 MROH2BQ7Z745 1585 aa21.86■■□□□ 1.09
SMARCE1-214ENST00000578112 PDS5BQ9NTI5 1447 aa21.81■■□□□ 1.08
SMARCE1-214ENST00000578112 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
SMARCE1-214ENST00000578112 CADPSQ9ULU8 1353 aa21.68■■□□□ 1.06
SMARCE1-214ENST00000578112 MRC2Q9UBG0 1479 aa21.62■■□□□ 1.05
SMARCE1-214ENST00000578112 WDR62O43379 1518 aa21.61■■□□□ 1.05
SMARCE1-214ENST00000578112 WIZO95785 1651 aa21.58■■□□□ 1.05
SMARCE1-214ENST00000578112 CEP164Q9UPV0 1460 aa21.49■■□□□ 1.03
SMARCE1-214ENST00000578112 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.03
SMARCE1-214ENST00000578112 CFTRP13569 1480 aa21.45■■□□□ 1.02
SMARCE1-214ENST00000578112 FANCD2Q9BXW9 1451 aa21.41■■□□□ 1.02
SMARCE1-214ENST00000578112 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.01
SMARCE1-214ENST00000578112 PRDM2Q13029 1718 aa21.36■■□□□ 1.01
SMARCE1-214ENST00000578112 URB2Q14146 1524 aaKnown RBP21.22■□□□□ 0.99
SMARCE1-214ENST00000578112 ABCC8Q09428 1581 aa21.14■□□□□ 0.97
SMARCE1-214ENST00000578112 IFT140Q96RY7 1462 aa21.11■□□□□ 0.97
SMARCE1-214ENST00000578112 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
SMARCE1-214ENST00000578112 CCDC88BA6NC98 1476 aa21.09■□□□□ 0.97
SMARCE1-214ENST00000578112 TOPBP1Q92547 1522 aa21.01■□□□□ 0.95
SMARCE1-214ENST00000578112 DNMBPQ6XZF7 1577 aa21■□□□□ 0.95
SMARCE1-214ENST00000578112 TRIM41Q8WV44 630 aa20.99■□□□□ 0.95
SMARCE1-214ENST00000578112 WDR97A6NE52 1622 aa20.9■□□□□ 0.94
SMARCE1-214ENST00000578112 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.94
SMARCE1-214ENST00000578112 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.93
SMARCE1-214ENST00000578112 RIMBP3CA6NJZ7 1639 aa20.88■□□□□ 0.93
SMARCE1-214ENST00000578112 RIMBP3BA6NNM3 1639 aa20.88■□□□□ 0.93
SMARCE1-214ENST00000578112 RIMBP3Q9UFD9 1639 aa20.88■□□□□ 0.93
SMARCE1-214ENST00000578112 TARBP1Q13395 1621 aaKnown RBP20.87■□□□□ 0.93
SMARCE1-214ENST00000578112 ARHGEF11O15085 1522 aa20.79■□□□□ 0.92
SMARCE1-214ENST00000578112 POLA1P09884 1462 aaPredicted RBP20.76■□□□□ 0.91
SMARCE1-214ENST00000578112 CHD1O14646 1710 aa20.74■□□□□ 0.91
SMARCE1-214ENST00000578112 AQRO60306 1485 aaKnown RBP eCLIP20.67■□□□□ 0.95e-8■■■□□ 18.8
SMARCE1-214ENST00000578112 SOGA1O94964 1423 aa20.65■□□□□ 0.9
SMARCE1-214ENST00000578112 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
SMARCE1-214ENST00000578112 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
SMARCE1-214ENST00000578112 CLASP1Q7Z460 1538 aa20.59■□□□□ 0.89
SMARCE1-214ENST00000578112 SYNJ1O43426 1573 aa20.58■□□□□ 0.89
SMARCE1-214ENST00000578112 RAD54L2Q9Y4B4 1467 aa20.58■□□□□ 0.89
SMARCE1-214ENST00000578112 CUX1P39880 1505 aa20.57■□□□□ 0.88
SMARCE1-214ENST00000578112 GRIN2BQ13224 1484 aa20.57■□□□□ 0.88
SMARCE1-214ENST00000578112 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
SMARCE1-214ENST00000578112 SNAPC4Q5SXM2 1469 aa20.55■□□□□ 0.88
SMARCE1-214ENST00000578112 SYNJ2O15056 1496 aa20.52■□□□□ 0.87
SMARCE1-214ENST00000578112 TDRD9Q8NDG6 1382 aaKnown RBP20.5■□□□□ 0.87
SMARCE1-214ENST00000578112 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
SMARCE1-214ENST00000578112 ABCA10Q8WWZ4 1543 aa20.47■□□□□ 0.87
SMARCE1-214ENST00000578112 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
SMARCE1-214ENST00000578112 ABCA5Q8WWZ7 1642 aa20.45■□□□□ 0.86
SMARCE1-214ENST00000578112 FBLN2P98095 1184 aa20.44■□□□□ 0.86
SMARCE1-214ENST00000578112 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
SMARCE1-214ENST00000578112 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
SMARCE1-214ENST00000578112 BIVM-ERCC5R4GMW8 1640 aa20.35■□□□□ 0.85
SMARCE1-214ENST00000578112 WRNQ14191 1432 aaPredicted RBP eCLIP20.32■□□□□ 0.84
SMARCE1-214ENST00000578112 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
SMARCE1-214ENST00000578112 ADAMTS12P58397 1594 aa20.29■□□□□ 0.84
SMARCE1-214ENST00000578112 GRIN2AQ12879 1464 aa20.27■□□□□ 0.84
SMARCE1-214ENST00000578112 NUP160Q12769 1436 aa20.26■□□□□ 0.83
SMARCE1-214ENST00000578112 ERICH3Q5RHP9 1530 aa20.25■□□□□ 0.83
SMARCE1-214ENST00000578112 TRHP20396 242 aaPredicted RBP20.25■□□□□ 0.83
SMARCE1-214ENST00000578112 SHROOM2Q13796 1616 aa20.23■□□□□ 0.83
SMARCE1-214ENST00000578112 FHAD1B1AJZ9 1412 aa20.22■□□□□ 0.83
SMARCE1-214ENST00000578112 CEP170Q5SW79 1584 aa20.17■□□□□ 0.82
SMARCE1-214ENST00000578112 SUPT5HO00267 1087 aaKnown RBP20.08■□□□□ 0.8
SMARCE1-214ENST00000578112 ERCC6L2Q5T890 1561 aa20.05■□□□□ 0.8
SMARCE1-214ENST00000578112 RUSC2Q8N2Y8 1516 aa20■□□□□ 0.79
SMARCE1-214ENST00000578112 CUL7Q14999 1698 aa19.96■□□□□ 0.79
SMARCE1-214ENST00000578112 PRG4Q92954 1404 aaPredicted RBP19.95■□□□□ 0.78
SMARCE1-214ENST00000578112 MAPKBP1O60336 1514 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms