RNA–Protein interactions for RNA: ENST00000577990.1

SMARCD2-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 3

Gene SMARCD2, Length 449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-206ENST00000577990 NISCHQ9Y2I1 1504 aa53.91■■■■■ 6.22
SMARCD2-206ENST00000577990 CCDC180Q9P1Z9 1646 aa47.97■■■■■ 5.27
SMARCD2-206ENST00000577990 ABCC9O60706 1549 aa47.61■■■■■ 5.21
SMARCD2-206ENST00000577990 RB1CC1Q8TDY2 1594 aa45.45■■■■■ 4.87
SMARCD2-206ENST00000577990 NACADO15069 1562 aa45.2■■■■■ 4.83
SMARCD2-206ENST00000577990 DCAF8L2P0C7V8 631 aa45.08■■■■■ 4.81
SMARCD2-206ENST00000577990 ZCCHC6Q5VYS8 1495 aaKnown RBP44.92■■■■■ 4.78
SMARCD2-206ENST00000577990 MYO15BQ96JP2 1530 aa44.8■■■■■ 4.76
SMARCD2-206ENST00000577990 DCAF1Q9Y4B6 1507 aa44.61■■■■■ 4.73
SMARCD2-206ENST00000577990 UNC13AQ9UPW8 1703 aa44.59■■■■■ 4.73
SMARCD2-206ENST00000577990 PABPN1Q86U42 306 aaKnown RBP eCLIP44.36■■■■■ 4.69
SMARCD2-206ENST00000577990 DNAJC5BQ9UF47 199 aa44.28■■■■■ 4.68
SMARCD2-206ENST00000577990 BICRAQ9NZM4 1560 aa44.16■■■■■ 4.66
SMARCD2-206ENST00000577990 SCRIBQ14160 1630 aa43.81■■■■■ 4.6
SMARCD2-206ENST00000577990 SHROOM4Q9ULL8 1493 aa43.46■■■■■ 4.55
SMARCD2-206ENST00000577990 CC2D2AQ9P2K1 1620 aa43.04■■■■■ 4.48
SMARCD2-206ENST00000577990 EIF4G1Q04637 1599 aaKnown RBP43.02■■■■■ 4.48
SMARCD2-206ENST00000577990 CECR2Q9BXF3 1484 aa42.81■■■■■ 4.44
SMARCD2-206ENST00000577990 SMARCA4P51532 1647 aa41.84■■■■■ 4.29
SMARCD2-206ENST00000577990 BAZ1AQ9NRL2 1556 aaPredicted RBP41.8■■■■■ 4.28
SMARCD2-206ENST00000577990 NCAPD3P42695 1498 aa41.68■■■■■ 4.26
SMARCD2-206ENST00000577990 ATAD2BQ9ULI0 1458 aa41.66■■■■■ 4.26
SMARCD2-206ENST00000577990 SMARCA2P51531 1590 aa41.57■■■■■ 4.25
SMARCD2-206ENST00000577990 MROH2BQ7Z745 1585 aa41.54■■■■■ 4.24
SMARCD2-206ENST00000577990 HMGXB3Q12766 1538 aa41.47■■■■■ 4.23
SMARCD2-206ENST00000577990 PEG3Q9GZU2 1588 aa41.43■■■■■ 4.22
SMARCD2-206ENST00000577990 BAZ1BQ9UIG0 1483 aaKnown RBP41.3■■■■■ 4.2
SMARCD2-206ENST00000577990 WIZO95785 1651 aa41.1■■■■■ 4.17
SMARCD2-206ENST00000577990 RSF1Q96T23 1441 aaPredicted RBP41.07■■■■■ 4.16
SMARCD2-206ENST00000577990 ERCC6Q03468 1493 aa41.06■■■■■ 4.16
SMARCD2-206ENST00000577990 NESP48681 1621 aa41.04■■■■■ 4.16
SMARCD2-206ENST00000577990 CUX2O14529 1486 aa40.79■■■■■ 4.12
SMARCD2-206ENST00000577990 LAMC3Q9Y6N6 1575 aa40.74■■■■■ 4.11
SMARCD2-206ENST00000577990 TOP2AP11388 1531 aaKnown RBP40.68■■■■■ 4.1
SMARCD2-206ENST00000577990 KIF21AQ7Z4S6 1674 aa40.59■■■■■ 4.09
SMARCD2-206ENST00000577990 THOC2Q8NI27 1593 aaKnown RBP40.55■■■■■ 4.08
SMARCD2-206ENST00000577990 CADPSQ9ULU8 1353 aa40.44■■■■■ 4.06
SMARCD2-206ENST00000577990 PDS5BQ9NTI5 1447 aa40.43■■■■■ 4.06
SMARCD2-206ENST00000577990 DNAJC5Q9H3Z4 198 aa40.3■■■■■ 4.04
SMARCD2-206ENST00000577990 CCDC88BA6NC98 1476 aa40.18■■■■■ 4.02
SMARCD2-206ENST00000577990 CFTRP13569 1480 aa40.13■■■■■ 4.01
SMARCD2-206ENST00000577990 MRC2Q9UBG0 1479 aa40.13■■■■■ 4.01
SMARCD2-206ENST00000577990 CEP164Q9UPV0 1460 aa40.05■■■■■ 4
SMARCD2-206ENST00000577990 FANCD2Q9BXW9 1451 aa40.04■■■■■ 4
SMARCD2-206ENST00000577990 WDR62O43379 1518 aa40.03■■■■■ 4
SMARCD2-206ENST00000577990 SUPT5HO00267 1087 aaKnown RBP40.01■■■■■ 4
SMARCD2-206ENST00000577990 PRDM2Q13029 1718 aa39.88■■■■□ 3.97
SMARCD2-206ENST00000577990 URB2Q14146 1524 aaKnown RBP39.72■■■■□ 3.95
SMARCD2-206ENST00000577990 TOPBP1Q92547 1522 aa39.34■■■■□ 3.89
SMARCD2-206ENST00000577990 ABCC8Q09428 1581 aa39.27■■■■□ 3.88
SMARCD2-206ENST00000577990 DNMBPQ6XZF7 1577 aa39.24■■■■□ 3.87
SMARCD2-206ENST00000577990 IFT140Q96RY7 1462 aa39.2■■■■□ 3.87
SMARCD2-206ENST00000577990 ZNF608Q9ULD9 1512 aaPredicted RBP39.17■■■■□ 3.86
SMARCD2-206ENST00000577990 EIF4G3O43432 1585 aaKnown RBP39.01■■■■□ 3.84
SMARCD2-206ENST00000577990 TARBP1Q13395 1621 aaKnown RBP39■■■■□ 3.83
SMARCD2-206ENST00000577990 CUX1P39880 1505 aa38.99■■■■□ 3.83
SMARCD2-206ENST00000577990 POLA1P09884 1462 aaPredicted RBP38.96■■■■□ 3.83
SMARCD2-206ENST00000577990 OSCARQ8IYS5 282 aa38.95■■■■□ 3.83
SMARCD2-206ENST00000577990 FGD5Q6ZNL6 1462 aa38.85■■■■□ 3.81
SMARCD2-206ENST00000577990 AQRO60306 1485 aaKnown RBP eCLIP38.84■■■■□ 3.81
SMARCD2-206ENST00000577990 RAD54L2Q9Y4B4 1467 aa38.84■■■■□ 3.81
SMARCD2-206ENST00000577990 TRIM41Q8WV44 630 aa38.8■■■■□ 3.8
SMARCD2-206ENST00000577990 SOGA1O94964 1423 aa38.77■■■■□ 3.8
SMARCD2-206ENST00000577990 WRNQ14191 1432 aaPredicted RBP eCLIP38.72■■■■□ 3.79
SMARCD2-206ENST00000577990 CHD1O14646 1710 aa38.71■■■■□ 3.79
SMARCD2-206ENST00000577990 BIVM-ERCC5R4GMW8 1640 aa38.66■■■■□ 3.78
SMARCD2-206ENST00000577990 TOP2BQ02880 1626 aa38.65■■■■□ 3.78
SMARCD2-206ENST00000577990 TDRD9Q8NDG6 1382 aaKnown RBP38.65■■■■□ 3.78
SMARCD2-206ENST00000577990 SYNJ1O43426 1573 aa38.64■■■■□ 3.78
SMARCD2-206ENST00000577990 WDR97A6NE52 1622 aa38.56■■■■□ 3.76
SMARCD2-206ENST00000577990 RIMBP3CA6NJZ7 1639 aa38.56■■■■□ 3.76
SMARCD2-206ENST00000577990 RIMBP3BA6NNM3 1639 aa38.56■■■■□ 3.76
SMARCD2-206ENST00000577990 RIMBP3Q9UFD9 1639 aa38.56■■■■□ 3.76
SMARCD2-206ENST00000577990 FBLN2P98095 1184 aa38.5■■■■□ 3.75
SMARCD2-206ENST00000577990 ABCA10Q8WWZ4 1543 aa38.48■■■■□ 3.75
SMARCD2-206ENST00000577990 SNAPC4Q5SXM2 1469 aa38.47■■■■□ 3.75
SMARCD2-206ENST00000577990 ARHGEF11O15085 1522 aa38.43■■■■□ 3.74
SMARCD2-206ENST00000577990 PBRM1Q86U86 1689 aa38.39■■■■□ 3.74
SMARCD2-206ENST00000577990 GRIN2BQ13224 1484 aa38.37■■■■□ 3.73
SMARCD2-206ENST00000577990 ABCA5Q8WWZ7 1642 aa38.34■■■■□ 3.73
SMARCD2-206ENST00000577990 GAPVD1Q14C86 1478 aa38.33■■■■□ 3.73
SMARCD2-206ENST00000577990 MAGI1Q96QZ7 1491 aaPredicted RBP38.33■■■■□ 3.73
SMARCD2-206ENST00000577990 CHMP7Q8WUX9 453 aaPredicted RBP38.22■■■■□ 3.71
SMARCD2-206ENST00000577990 SYNJ2O15056 1496 aa38.21■■■■□ 3.71
SMARCD2-206ENST00000577990 CLASP1Q7Z460 1538 aa38.17■■■■□ 3.7
SMARCD2-206ENST00000577990 ARAP1Q96P48 1450 aa38.09■■■■□ 3.69
SMARCD2-206ENST00000577990 CYB5RLQ6IPT4 315 aa38.08■■■■□ 3.69
SMARCD2-206ENST00000577990 ERICH3Q5RHP9 1530 aa38.02■■■■□ 3.68
SMARCD2-206ENST00000577990 ADAMTS12P58397 1594 aa37.99■■■■□ 3.67
SMARCD2-206ENST00000577990 KIF27Q86VH2 1401 aa37.92■■■■□ 3.66
SMARCD2-206ENST00000577990 GRIN2AQ12879 1464 aa37.91■■■■□ 3.66
SMARCD2-206ENST00000577990 FHAD1B1AJZ9 1412 aa37.89■■■■□ 3.66
SMARCD2-206ENST00000577990 CEP170Q5SW79 1584 aa37.81■■■■□ 3.64
SMARCD2-206ENST00000577990 IGF1RP08069 1367 aa37.75■■■■□ 3.63
SMARCD2-206ENST00000577990 NUP160Q12769 1436 aa37.74■■■■□ 3.63
SMARCD2-206ENST00000577990 CUL7Q14999 1698 aa37.69■■■■□ 3.62
SMARCD2-206ENST00000577990 ERCC6L2Q5T890 1561 aa37.67■■■■□ 3.62
SMARCD2-206ENST00000577990 SHROOM2Q13796 1616 aa37.58■■■■□ 3.61
SMARCD2-206ENST00000577990 RUSC2Q8N2Y8 1516 aa37.56■■■■□ 3.6
SMARCD2-206ENST00000577990 TRHP20396 242 aaPredicted RBP37.54■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 134.5 ms