RNA–Protein interactions for RNA: ENST00000577646.5

RARA-208, Transcript of retinoic acid receptor alpha, humanhuman

TSL 5

Gene RARA, Length 733 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-208ENST00000577646 NISCHQ9Y2I1 1504 aa29.56■■■□□ 2.32
RARA-208ENST00000577646 CCDC180Q9P1Z9 1646 aa26.22■■□□□ 1.79
RARA-208ENST00000577646 ABCC9O60706 1549 aa25.62■■□□□ 1.69
RARA-208ENST00000577646 ZCCHC6Q5VYS8 1495 aaKnown RBP24.65■■□□□ 1.54
RARA-208ENST00000577646 MYO15BQ96JP2 1530 aa24.64■■□□□ 1.53
RARA-208ENST00000577646 NACADO15069 1562 aa24.63■■□□□ 1.53
RARA-208ENST00000577646 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.53
RARA-208ENST00000577646 RB1CC1Q8TDY2 1594 aa24.58■■□□□ 1.52
RARA-208ENST00000577646 DCAF8L2P0C7V8 631 aa24.54■■□□□ 1.52
RARA-208ENST00000577646 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
RARA-208ENST00000577646 PABPN1Q86U42 306 aaKnown RBP eCLIP23.93■■□□□ 1.42
RARA-208ENST00000577646 UNC13AQ9UPW8 1703 aa23.87■■□□□ 1.41
RARA-208ENST00000577646 SCRIBQ14160 1630 aa23.79■■□□□ 1.4
RARA-208ENST00000577646 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
RARA-208ENST00000577646 SHROOM4Q9ULL8 1493 aa23.71■■□□□ 1.39
RARA-208ENST00000577646 EIF4G1Q04637 1599 aaKnown RBP23.15■■□□□ 1.3
RARA-208ENST00000577646 CC2D2AQ9P2K1 1620 aa23.12■■□□□ 1.29
RARA-208ENST00000577646 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
RARA-208ENST00000577646 BAZ1AQ9NRL2 1556 aaPredicted RBP22.93■■□□□ 1.26
RARA-208ENST00000577646 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
RARA-208ENST00000577646 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
RARA-208ENST00000577646 NCAPD3P42695 1498 aa22.73■■□□□ 1.23
RARA-208ENST00000577646 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
RARA-208ENST00000577646 PEG3Q9GZU2 1588 aa22.72■■□□□ 1.23
RARA-208ENST00000577646 ATAD2BQ9ULI0 1458 aa22.71■■□□□ 1.23
RARA-208ENST00000577646 HMGXB3Q12766 1538 aa22.61■■□□□ 1.21
RARA-208ENST00000577646 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
RARA-208ENST00000577646 BAZ1BQ9UIG0 1483 aaKnown RBP22.53■■□□□ 1.2
RARA-208ENST00000577646 DNAJC5Q9H3Z4 198 aa22.48■■□□□ 1.19
RARA-208ENST00000577646 WIZO95785 1651 aa22.45■■□□□ 1.18
RARA-208ENST00000577646 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
RARA-208ENST00000577646 ERCC6Q03468 1493 aa22.15■■□□□ 1.14
RARA-208ENST00000577646 SUPT5HO00267 1087 aaKnown RBP22.12■■□□□ 1.13
RARA-208ENST00000577646 LAMC3Q9Y6N6 1575 aa22.08■■□□□ 1.12
RARA-208ENST00000577646 CADPSQ9ULU8 1353 aa22.06■■□□□ 1.12
RARA-208ENST00000577646 NESP48681 1621 aa22.06■■□□□ 1.12
RARA-208ENST00000577646 CUX2O14529 1486 aa22.05■■□□□ 1.12
RARA-208ENST00000577646 CCDC88BA6NC98 1476 aa22.03■■□□□ 1.12
RARA-208ENST00000577646 CFTRP13569 1480 aa21.96■■□□□ 1.11
RARA-208ENST00000577646 PDS5BQ9NTI5 1447 aa21.96■■□□□ 1.11
RARA-208ENST00000577646 KIF21AQ7Z4S6 1674 aa21.75■■□□□ 1.07
RARA-208ENST00000577646 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
RARA-208ENST00000577646 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
RARA-208ENST00000577646 THOC2Q8NI27 1593 aaKnown RBP21.74■■□□□ 1.07
RARA-208ENST00000577646 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
RARA-208ENST00000577646 MRC2Q9UBG0 1479 aa21.65■■□□□ 1.06
RARA-208ENST00000577646 ABCC8Q09428 1581 aa21.58■■□□□ 1.05
RARA-208ENST00000577646 WDR62O43379 1518 aa21.55■■□□□ 1.04
RARA-208ENST00000577646 URB2Q14146 1524 aaKnown RBP21.48■■□□□ 1.03
RARA-208ENST00000577646 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
RARA-208ENST00000577646 TOPBP1Q92547 1522 aa21.42■■□□□ 1.02
RARA-208ENST00000577646 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
RARA-208ENST00000577646 CUX1P39880 1505 aa21.3■■□□□ 1
RARA-208ENST00000577646 IFT140Q96RY7 1462 aa21.29■■□□□ 1
RARA-208ENST00000577646 TRIM41Q8WV44 630 aa21.28■■□□□ 1
RARA-208ENST00000577646 POLA1P09884 1462 aaPredicted RBP21.25■□□□□ 0.99
RARA-208ENST00000577646 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
RARA-208ENST00000577646 BIVM-ERCC5R4GMW8 1640 aa21.22■□□□□ 0.99
RARA-208ENST00000577646 SOGA1O94964 1423 aa21.21■□□□□ 0.99
RARA-208ENST00000577646 FGD5Q6ZNL6 1462 aa21.21■□□□□ 0.99
RARA-208ENST00000577646 TARBP1Q13395 1621 aaKnown RBP21.16■□□□□ 0.98
RARA-208ENST00000577646 SYNJ1O43426 1573 aa21.15■□□□□ 0.98
RARA-208ENST00000577646 WDR97A6NE52 1622 aa21.15■□□□□ 0.98
RARA-208ENST00000577646 RAD54L2Q9Y4B4 1467 aa21.1■□□□□ 0.97
RARA-208ENST00000577646 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
RARA-208ENST00000577646 ZNF608Q9ULD9 1512 aaPredicted RBP21.09■□□□□ 0.97
RARA-208ENST00000577646 OSCARQ8IYS5 282 aa21.08■□□□□ 0.97
RARA-208ENST00000577646 TDRD9Q8NDG6 1382 aaKnown RBP21■□□□□ 0.95
RARA-208ENST00000577646 EIF4G3O43432 1585 aaKnown RBP21■□□□□ 0.95
RARA-208ENST00000577646 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.956e-7■■■□□ 15.2
RARA-208ENST00000577646 GAPVD1Q14C86 1478 aa20.96■□□□□ 0.95
RARA-208ENST00000577646 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
RARA-208ENST00000577646 ABCA5Q8WWZ7 1642 aa20.93■□□□□ 0.94
RARA-208ENST00000577646 KIF27Q86VH2 1401 aa20.89■□□□□ 0.94
RARA-208ENST00000577646 MAGI1Q96QZ7 1491 aaPredicted RBP20.88■□□□□ 0.93
RARA-208ENST00000577646 FBLN2P98095 1184 aa20.87■□□□□ 0.93
RARA-208ENST00000577646 ERICH3Q5RHP9 1530 aa20.86■□□□□ 0.93
RARA-208ENST00000577646 CHIC1Q5VXU3 224 aa20.83■□□□□ 0.93
RARA-208ENST00000577646 PBRM1Q86U86 1689 aa20.82■□□□□ 0.92
RARA-208ENST00000577646 SNAPC4Q5SXM2 1469 aa20.8■□□□□ 0.92
RARA-208ENST00000577646 SYNJ2O15056 1496 aa20.78■□□□□ 0.92
RARA-208ENST00000577646 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
RARA-208ENST00000577646 IGF1RP08069 1367 aa20.76■□□□□ 0.91
RARA-208ENST00000577646 FHAD1B1AJZ9 1412 aa20.76■□□□□ 0.91
RARA-208ENST00000577646 CHD1O14646 1710 aa20.75■□□□□ 0.91
RARA-208ENST00000577646 EEA1Q15075 1411 aa20.7■□□□□ 0.9
RARA-208ENST00000577646 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
RARA-208ENST00000577646 CUL7Q14999 1698 aa20.69■□□□□ 0.9
RARA-208ENST00000577646 RIMBP3CA6NJZ7 1639 aa20.68■□□□□ 0.9
RARA-208ENST00000577646 RIMBP3BA6NNM3 1639 aa20.68■□□□□ 0.9
RARA-208ENST00000577646 RIMBP3Q9UFD9 1639 aa20.68■□□□□ 0.9
RARA-208ENST00000577646 ARHGEF11O15085 1522 aa20.64■□□□□ 0.9
RARA-208ENST00000577646 GRIN2AQ12879 1464 aa20.64■□□□□ 0.89
RARA-208ENST00000577646 CARMIL1Q5VZK9 1371 aa20.64■□□□□ 0.89
RARA-208ENST00000577646 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
RARA-208ENST00000577646 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
RARA-208ENST00000577646 NUP160Q12769 1436 aa20.56■□□□□ 0.88
RARA-208ENST00000577646 CYB5RLQ6IPT4 315 aa20.56■□□□□ 0.88
RARA-208ENST00000577646 RAPGEF2Q9Y4G8 1499 aa20.54■□□□□ 0.88
RARA-208ENST00000577646 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms