RNA–Protein interactions for RNA: ENST00000576407.1

PRPF8-213, Transcript of pre-mRNA processing factor 8, humanhuman

TSL 2

Gene PRPF8, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF8-213ENST00000576407 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
PRPF8-213ENST00000576407 CCDC180Q9P1Z9 1646 aa17.82■□□□□ 0.44
PRPF8-213ENST00000576407 ABCC9O60706 1549 aa17.18■□□□□ 0.34
PRPF8-213ENST00000576407 ZCCHC6Q5VYS8 1495 aaKnown RBP16.89■□□□□ 0.29
PRPF8-213ENST00000576407 DCAF8L2P0C7V8 631 aa16.78■□□□□ 0.28
PRPF8-213ENST00000576407 DCAF1Q9Y4B6 1507 aa16.71■□□□□ 0.27
PRPF8-213ENST00000576407 NACADO15069 1562 aa16.68■□□□□ 0.26
PRPF8-213ENST00000576407 MYO15BQ96JP2 1530 aa16.68■□□□□ 0.26
PRPF8-213ENST00000576407 RB1CC1Q8TDY2 1594 aa16.64■□□□□ 0.25
PRPF8-213ENST00000576407 SCRIBQ14160 1630 aa16.3■□□□□ 0.2
PRPF8-213ENST00000576407 UNC13AQ9UPW8 1703 aa16.28■□□□□ 0.2
PRPF8-213ENST00000576407 SHROOM4Q9ULL8 1493 aa16.16■□□□□ 0.18
PRPF8-213ENST00000576407 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.17
PRPF8-213ENST00000576407 PABPN1Q86U42 306 aaKnown RBP eCLIP16.11■□□□□ 0.17
PRPF8-213ENST00000576407 CECR2Q9BXF3 1484 aa15.71■□□□□ 0.11
PRPF8-213ENST00000576407 EIF4G1Q04637 1599 aaKnown RBP15.68■□□□□ 0.1
PRPF8-213ENST00000576407 BAZ1AQ9NRL2 1556 aaPredicted RBP15.63■□□□□ 0.09
PRPF8-213ENST00000576407 SMARCA4P51532 1647 aa15.61■□□□□ 0.09
PRPF8-213ENST00000576407 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.09
PRPF8-213ENST00000576407 CC2D2AQ9P2K1 1620 aa15.55■□□□□ 0.08
PRPF8-213ENST00000576407 DNAJC5BQ9UF47 199 aa15.52■□□□□ 0.08
PRPF8-213ENST00000576407 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
PRPF8-213ENST00000576407 ATAD2BQ9ULI0 1458 aa15.46■□□□□ 0.06
PRPF8-213ENST00000576407 SMARCA2P51531 1590 aa15.45■□□□□ 0.06
PRPF8-213ENST00000576407 PEG3Q9GZU2 1588 aa15.45■□□□□ 0.06
PRPF8-213ENST00000576407 WIZO95785 1651 aa15.43■□□□□ 0.06
PRPF8-213ENST00000576407 NCAPD3P42695 1498 aa15.4■□□□□ 0.06
PRPF8-213ENST00000576407 HMGXB3Q12766 1538 aa15.35■□□□□ 0.05
PRPF8-213ENST00000576407 SUPT5HO00267 1087 aaKnown RBP15.35■□□□□ 0.05
PRPF8-213ENST00000576407 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
PRPF8-213ENST00000576407 TOP2AP11388 1531 aaKnown RBP15.27■□□□□ 0.04
PRPF8-213ENST00000576407 CCDC88BA6NC98 1476 aa15.1■□□□□ 0.01
PRPF8-213ENST00000576407 CADPSQ9ULU8 1353 aa14.97□□□□□ -0.01
PRPF8-213ENST00000576407 NESP48681 1621 aa14.95□□□□□ -0.02
PRPF8-213ENST00000576407 LAMC3Q9Y6N6 1575 aa14.94□□□□□ -0.02
PRPF8-213ENST00000576407 CFTRP13569 1480 aa14.94□□□□□ -0.02
PRPF8-213ENST00000576407 PRDM2Q13029 1718 aa14.84□□□□□ -0.03
PRPF8-213ENST00000576407 PDS5BQ9NTI5 1447 aa14.83□□□□□ -0.03
PRPF8-213ENST00000576407 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
PRPF8-213ENST00000576407 KIF21AQ7Z4S6 1674 aa14.78□□□□□ -0.04
PRPF8-213ENST00000576407 ERCC6Q03468 1493 aa14.77□□□□□ -0.04
PRPF8-213ENST00000576407 CEP164Q9UPV0 1460 aa14.75□□□□□ -0.05
PRPF8-213ENST00000576407 MRC2Q9UBG0 1479 aa14.66□□□□□ -0.06
PRPF8-213ENST00000576407 ABCC8Q09428 1581 aa14.65□□□□□ -0.06
PRPF8-213ENST00000576407 THOC2Q8NI27 1593 aaKnown RBP14.65□□□□□ -0.06
PRPF8-213ENST00000576407 URB2Q14146 1524 aaKnown RBP14.64□□□□□ -0.07
PRPF8-213ENST00000576407 WRNQ14191 1432 aaPredicted RBP eCLIP14.61□□□□□ -0.07
PRPF8-213ENST00000576407 WDR62O43379 1518 aa14.61□□□□□ -0.07
PRPF8-213ENST00000576407 CUX1P39880 1505 aa14.61□□□□□ -0.07
PRPF8-213ENST00000576407 DNMBPQ6XZF7 1577 aa14.6□□□□□ -0.07
PRPF8-213ENST00000576407 TOPBP1Q92547 1522 aa14.6□□□□□ -0.07
PRPF8-213ENST00000576407 SYNJ1O43426 1573 aa14.57□□□□□ -0.08
PRPF8-213ENST00000576407 TOP2BQ02880 1626 aa14.55□□□□□ -0.08
PRPF8-213ENST00000576407 BIVM-ERCC5R4GMW8 1640 aa14.55□□□□□ -0.08
PRPF8-213ENST00000576407 FGD5Q6ZNL6 1462 aa14.5□□□□□ -0.09
PRPF8-213ENST00000576407 CUX2O14529 1486 aa14.5□□□□□ -0.09
PRPF8-213ENST00000576407 CHIC1Q5VXU3 224 aa14.49□□□□□ -0.09
PRPF8-213ENST00000576407 POLA1P09884 1462 aaPredicted RBP14.49□□□□□ -0.09
PRPF8-213ENST00000576407 TRIM41Q8WV44 630 aa14.48□□□□□ -0.09
PRPF8-213ENST00000576407 SOGA1O94964 1423 aa14.44□□□□□ -0.1
PRPF8-213ENST00000576407 RAD54L2Q9Y4B4 1467 aa14.44□□□□□ -0.1
PRPF8-213ENST00000576407 IFT140Q96RY7 1462 aa14.43□□□□□ -0.1
PRPF8-213ENST00000576407 TARBP1Q13395 1621 aaKnown RBP14.42□□□□□ -0.1
PRPF8-213ENST00000576407 DNAJC5Q9H3Z4 198 aa14.41□□□□□ -0.1
PRPF8-213ENST00000576407 ABCA10Q8WWZ4 1543 aa14.37□□□□□ -0.11
PRPF8-213ENST00000576407 WDR97A6NE52 1622 aa14.37□□□□□ -0.11
PRPF8-213ENST00000576407 ZNF608Q9ULD9 1512 aaPredicted RBP14.36□□□□□ -0.11
PRPF8-213ENST00000576407 TDRD9Q8NDG6 1382 aaKnown RBP14.33□□□□□ -0.12
PRPF8-213ENST00000576407 AQRO60306 1485 aaKnown RBP eCLIP14.31□□□□□ -0.126e-8■■■■■ 40.1
PRPF8-213ENST00000576407 EIF4G3O43432 1585 aaKnown RBP14.3□□□□□ -0.12
PRPF8-213ENST00000576407 ABCA5Q8WWZ7 1642 aa14.3□□□□□ -0.12
PRPF8-213ENST00000576407 GAPVD1Q14C86 1478 aa14.28□□□□□ -0.12
PRPF8-213ENST00000576407 KIF27Q86VH2 1401 aa14.28□□□□□ -0.12
PRPF8-213ENST00000576407 RUSC2Q8N2Y8 1516 aa14.26□□□□□ -0.13
PRPF8-213ENST00000576407 GRIN2BQ13224 1484 aa14.23□□□□□ -0.13
PRPF8-213ENST00000576407 PBRM1Q86U86 1689 aa14.23□□□□□ -0.13
PRPF8-213ENST00000576407 ERICH3Q5RHP9 1530 aa14.2□□□□□ -0.14
PRPF8-213ENST00000576407 EEA1Q15075 1411 aa14.19□□□□□ -0.14
PRPF8-213ENST00000576407 IGF1RP08069 1367 aa14.19□□□□□ -0.14
PRPF8-213ENST00000576407 FAM9AQ8IZU1 332 aaPredicted RBP14.18□□□□□ -0.14
PRPF8-213ENST00000576407 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
PRPF8-213ENST00000576407 MAGI1Q96QZ7 1491 aaPredicted RBP14.16□□□□□ -0.14
PRPF8-213ENST00000576407 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
PRPF8-213ENST00000576407 ADAMTS12P58397 1594 aa14.13□□□□□ -0.15
PRPF8-213ENST00000576407 CUL7Q14999 1698 aa14.13□□□□□ -0.15
PRPF8-213ENST00000576407 FHAD1B1AJZ9 1412 aa14.12□□□□□ -0.15
PRPF8-213ENST00000576407 SYNJ2O15056 1496 aa14.11□□□□□ -0.15
PRPF8-213ENST00000576407 CARMIL1Q5VZK9 1371 aa14.1□□□□□ -0.15
PRPF8-213ENST00000576407 PRXQ9BXM0 1461 aa14.08□□□□□ -0.16
PRPF8-213ENST00000576407 FBLN2P98095 1184 aa14.08□□□□□ -0.16
PRPF8-213ENST00000576407 CHMP7Q8WUX9 453 aaPredicted RBP14.08□□□□□ -0.16
PRPF8-213ENST00000576407 CHD1O14646 1710 aa14.07□□□□□ -0.16
PRPF8-213ENST00000576407 RAPGEF2Q9Y4G8 1499 aa14.06□□□□□ -0.16
PRPF8-213ENST00000576407 GRIN2AQ12879 1464 aa14.05□□□□□ -0.16
PRPF8-213ENST00000576407 KIF21BO75037 1637 aa14.03□□□□□ -0.16
PRPF8-213ENST00000576407 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
PRPF8-213ENST00000576407 GOLGA3Q08378 1498 aa13.98□□□□□ -0.17
PRPF8-213ENST00000576407 CEP170Q5SW79 1584 aa13.97□□□□□ -0.17
PRPF8-213ENST00000576407 NUP160Q12769 1436 aa13.97□□□□□ -0.17
PRPF8-213ENST00000576407 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms