RNA–Protein interactions for RNA: ENST00000573716.1

PRPF8-208, Transcript of pre-mRNA processing factor 8, humanhuman

TSL 2

Gene PRPF8, Length 542 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF8-208ENST00000573716 NISCHQ9Y2I1 1504 aa31■■■□□ 2.55
PRPF8-208ENST00000573716 ABCC9O60706 1549 aa28.49■■■□□ 2.15
PRPF8-208ENST00000573716 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
PRPF8-208ENST00000573716 DNAJC5BQ9UF47 199 aa27.04■■□□□ 1.92
PRPF8-208ENST00000573716 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
PRPF8-208ENST00000573716 NACADO15069 1562 aa26.56■■□□□ 1.84
PRPF8-208ENST00000573716 DCAF8L2P0C7V8 631 aa26.52■■□□□ 1.84
PRPF8-208ENST00000573716 PABPN1Q86U42 306 aaKnown RBP eCLIP26.47■■□□□ 1.83
PRPF8-208ENST00000573716 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
PRPF8-208ENST00000573716 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
PRPF8-208ENST00000573716 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
PRPF8-208ENST00000573716 CC2D2AQ9P2K1 1620 aa25.69■■□□□ 1.7
PRPF8-208ENST00000573716 CECR2Q9BXF3 1484 aa25.67■■□□□ 1.7
PRPF8-208ENST00000573716 SHROOM4Q9ULL8 1493 aa25.62■■□□□ 1.69
PRPF8-208ENST00000573716 ZCCHC6Q5VYS8 1495 aaKnown RBP25.6■■□□□ 1.69
PRPF8-208ENST00000573716 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
PRPF8-208ENST00000573716 DCAF1Q9Y4B6 1507 aa25.52■■□□□ 1.68
PRPF8-208ENST00000573716 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
PRPF8-208ENST00000573716 DNAJC5Q9H3Z4 198 aa25.11■■□□□ 1.61
PRPF8-208ENST00000573716 ERCC6Q03468 1493 aa24.65■■□□□ 1.54
PRPF8-208ENST00000573716 CUX2O14529 1486 aa24.64■■□□□ 1.54
PRPF8-208ENST00000573716 NCAPD3P42695 1498 aa24.5■■□□□ 1.51
PRPF8-208ENST00000573716 ATAD2BQ9ULI0 1458 aa24.4■■□□□ 1.5
PRPF8-208ENST00000573716 NESP48681 1621 aa24.35■■□□□ 1.49
PRPF8-208ENST00000573716 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
PRPF8-208ENST00000573716 SMARCA4P51532 1647 aa24.31■■□□□ 1.48
PRPF8-208ENST00000573716 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
PRPF8-208ENST00000573716 BAZ1BQ9UIG0 1483 aaKnown RBP24.19■■□□□ 1.46
PRPF8-208ENST00000573716 THOC2Q8NI27 1593 aaKnown RBP24.15■■□□□ 1.46
PRPF8-208ENST00000573716 BAZ1AQ9NRL2 1556 aaPredicted RBP24.11■■□□□ 1.45
PRPF8-208ENST00000573716 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
PRPF8-208ENST00000573716 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
PRPF8-208ENST00000573716 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
PRPF8-208ENST00000573716 TRIM41Q8WV44 630 aa23.98■■□□□ 1.43
PRPF8-208ENST00000573716 PDS5BQ9NTI5 1447 aa23.94■■□□□ 1.42
PRPF8-208ENST00000573716 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
PRPF8-208ENST00000573716 AEBP2Q6ZN18 517 aaPredicted RBP23.78■■□□□ 1.4
PRPF8-208ENST00000573716 MRC2Q9UBG0 1479 aa23.77■■□□□ 1.4
PRPF8-208ENST00000573716 CADPSQ9ULU8 1353 aa23.77■■□□□ 1.4
PRPF8-208ENST00000573716 WDR62O43379 1518 aa23.7■■□□□ 1.38
PRPF8-208ENST00000573716 WIZO95785 1651 aa23.65■■□□□ 1.38
PRPF8-208ENST00000573716 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
PRPF8-208ENST00000573716 FANCD2Q9BXW9 1451 aa23.54■■□□□ 1.36
PRPF8-208ENST00000573716 OSCARQ8IYS5 282 aa23.49■■□□□ 1.35
PRPF8-208ENST00000573716 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
PRPF8-208ENST00000573716 CFTRP13569 1480 aa23.39■■□□□ 1.34
PRPF8-208ENST00000573716 URB2Q14146 1524 aaKnown RBP23.37■■□□□ 1.33
PRPF8-208ENST00000573716 TOP2AP11388 1531 aaKnown RBP23.28■■□□□ 1.32
PRPF8-208ENST00000573716 RIMBP3CA6NJZ7 1639 aa23.26■■□□□ 1.31
PRPF8-208ENST00000573716 RIMBP3BA6NNM3 1639 aa23.26■■□□□ 1.31
PRPF8-208ENST00000573716 RIMBP3Q9UFD9 1639 aa23.26■■□□□ 1.31
PRPF8-208ENST00000573716 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
PRPF8-208ENST00000573716 PRDM2Q13029 1718 aa23.2■■□□□ 1.3
PRPF8-208ENST00000573716 ZNF608Q9ULD9 1512 aaPredicted RBP23.16■■□□□ 1.3
PRPF8-208ENST00000573716 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
PRPF8-208ENST00000573716 ARHGEF11O15085 1522 aa23.12■■□□□ 1.29
PRPF8-208ENST00000573716 TOPBP1Q92547 1522 aa23.04■■□□□ 1.28
PRPF8-208ENST00000573716 EIF4G3O43432 1585 aaKnown RBP23.02■■□□□ 1.28
PRPF8-208ENST00000573716 CYB5RLQ6IPT4 315 aa23.02■■□□□ 1.28
PRPF8-208ENST00000573716 CCDC88BA6NC98 1476 aa23.02■■□□□ 1.28
PRPF8-208ENST00000573716 CHD1O14646 1710 aa22.97■■□□□ 1.27
PRPF8-208ENST00000573716 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
PRPF8-208ENST00000573716 FBLN2P98095 1184 aa22.93■■□□□ 1.26
PRPF8-208ENST00000573716 ABCC8Q09428 1581 aa22.92■■□□□ 1.26
PRPF8-208ENST00000573716 DNMBPQ6XZF7 1577 aa22.92■■□□□ 1.26
PRPF8-208ENST00000573716 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
PRPF8-208ENST00000573716 ARAP1Q96P48 1450 aa22.86■■□□□ 1.25
PRPF8-208ENST00000573716 TARBP1Q13395 1621 aaKnown RBP22.86■■□□□ 1.25
PRPF8-208ENST00000573716 POLA1P09884 1462 aaPredicted RBP22.77■■□□□ 1.24
PRPF8-208ENST00000573716 RAD54L2Q9Y4B4 1467 aa22.73■■□□□ 1.23
PRPF8-208ENST00000573716 TDRD9Q8NDG6 1382 aaKnown RBP22.71■■□□□ 1.23
PRPF8-208ENST00000573716 SOGA1O94964 1423 aa22.68■■□□□ 1.22
PRPF8-208ENST00000573716 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
PRPF8-208ENST00000573716 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
PRPF8-208ENST00000573716 CLASP1Q7Z460 1538 aa22.61■■□□□ 1.21
PRPF8-208ENST00000573716 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
PRPF8-208ENST00000573716 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
PRPF8-208ENST00000573716 MAGI1Q96QZ7 1491 aaPredicted RBP22.54■■□□□ 1.2
PRPF8-208ENST00000573716 WDR97A6NE52 1622 aa22.54■■□□□ 1.2
PRPF8-208ENST00000573716 GRIN2BQ13224 1484 aa22.52■■□□□ 1.2
PRPF8-208ENST00000573716 CUX1P39880 1505 aa22.5■■□□□ 1.19
PRPF8-208ENST00000573716 SYNJ2O15056 1496 aa22.48■■□□□ 1.19
PRPF8-208ENST00000573716 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
PRPF8-208ENST00000573716 GAPVD1Q14C86 1478 aa22.43■■□□□ 1.18
PRPF8-208ENST00000573716 ABCA5Q8WWZ7 1642 aa22.3■■□□□ 1.16
PRPF8-208ENST00000573716 ERCC6L2Q5T890 1561 aa22.28■■□□□ 1.16
PRPF8-208ENST00000573716 ABCA10Q8WWZ4 1543 aa22.26■■□□□ 1.15
PRPF8-208ENST00000573716 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
PRPF8-208ENST00000573716 CEP170Q5SW79 1584 aa22.2■■□□□ 1.14
PRPF8-208ENST00000573716 ADAMTS12P58397 1594 aa22.17■■□□□ 1.14
PRPF8-208ENST00000573716 NUP160Q12769 1436 aa22.13■■□□□ 1.13
PRPF8-208ENST00000573716 WRNQ14191 1432 aaPredicted RBP eCLIP22.13■■□□□ 1.13
PRPF8-208ENST00000573716 SHROOM2Q13796 1616 aa22.09■■□□□ 1.13
PRPF8-208ENST00000573716 KIF13AQ9H1H9 1805 aa22.08■■□□□ 1.13
PRPF8-208ENST00000573716 FHAD1B1AJZ9 1412 aa22.07■■□□□ 1.12
PRPF8-208ENST00000573716 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
PRPF8-208ENST00000573716 BIVM-ERCC5R4GMW8 1640 aa22.02■■□□□ 1.12
PRPF8-208ENST00000573716 PRG4Q92954 1404 aaPredicted RBP22.02■■□□□ 1.12
PRPF8-208ENST00000573716 TOP2BQ02880 1626 aa22.02■■□□□ 1.11
PRPF8-208ENST00000573716 ERICH3Q5RHP9 1530 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms