RNA–Protein interactions for RNA: ENST00000572255.5

LITAF-211, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4 BASIC

Gene LITAF, Length 516 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-211ENST00000572255 NISCHQ9Y2I1 1504 aa43.12■■■■■ 4.49
LITAF-211ENST00000572255 CCDC180Q9P1Z9 1646 aa38.61■■■■□ 3.77
LITAF-211ENST00000572255 ABCC9O60706 1549 aa38.33■■■■□ 3.73
LITAF-211ENST00000572255 RB1CC1Q8TDY2 1594 aa36.61■■■■□ 3.45
LITAF-211ENST00000572255 NACADO15069 1562 aa36.42■■■■□ 3.42
LITAF-211ENST00000572255 DCAF8L2P0C7V8 631 aa36.25■■■■□ 3.39
LITAF-211ENST00000572255 MYO15BQ96JP2 1530 aa36■■■■□ 3.35
LITAF-211ENST00000572255 UNC13AQ9UPW8 1703 aa35.82■■■■□ 3.32
LITAF-211ENST00000572255 ZCCHC6Q5VYS8 1495 aaKnown RBP35.8■■■■□ 3.32
LITAF-211ENST00000572255 PABPN1Q86U42 306 aaKnown RBP eCLIP35.71■■■■□ 3.31
LITAF-211ENST00000572255 DNAJC5BQ9UF47 199 aa35.71■■■■□ 3.31
LITAF-211ENST00000572255 DCAF1Q9Y4B6 1507 aa35.63■■■■□ 3.29
LITAF-211ENST00000572255 BICRAQ9NZM4 1560 aa35.55■■■■□ 3.28
LITAF-211ENST00000572255 SCRIBQ14160 1630 aa35.19■■■■□ 3.22
LITAF-211ENST00000572255 SHROOM4Q9ULL8 1493 aa35.09■■■■□ 3.21
LITAF-211ENST00000572255 CC2D2AQ9P2K1 1620 aa34.65■■■■□ 3.14
LITAF-211ENST00000572255 EIF4G1Q04637 1599 aaKnown RBP34.64■■■■□ 3.14
LITAF-211ENST00000572255 CECR2Q9BXF3 1484 aa34.5■■■■□ 3.11
LITAF-211ENST00000572255 NCAPD3P42695 1498 aa33.61■■■□□ 2.97
LITAF-211ENST00000572255 SMARCA4P51532 1647 aa33.6■■■□□ 2.97
LITAF-211ENST00000572255 ATAD2BQ9ULI0 1458 aa33.54■■■□□ 2.96
LITAF-211ENST00000572255 SMARCA2P51531 1590 aa33.48■■■□□ 2.95
LITAF-211ENST00000572255 BAZ1AQ9NRL2 1556 aaPredicted RBP33.46■■■□□ 2.95
LITAF-211ENST00000572255 HMGXB3Q12766 1538 aa33.4■■■□□ 2.94
LITAF-211ENST00000572255 PEG3Q9GZU2 1588 aa33.26■■■□□ 2.92
LITAF-211ENST00000572255 BAZ1BQ9UIG0 1483 aaKnown RBP33.24■■■□□ 2.91
LITAF-211ENST00000572255 MROH2BQ7Z745 1585 aa33.23■■■□□ 2.91
LITAF-211ENST00000572255 ERCC6Q03468 1493 aa33.08■■■□□ 2.89
LITAF-211ENST00000572255 NESP48681 1621 aa33■■■□□ 2.87
LITAF-211ENST00000572255 CUX2O14529 1486 aa32.93■■■□□ 2.86
LITAF-211ENST00000572255 WIZO95785 1651 aa32.85■■■□□ 2.85
LITAF-211ENST00000572255 LAMC3Q9Y6N6 1575 aa32.83■■■□□ 2.85
LITAF-211ENST00000572255 THOC2Q8NI27 1593 aaKnown RBP32.64■■■□□ 2.82
LITAF-211ENST00000572255 RSF1Q96T23 1441 aaPredicted RBP32.62■■■□□ 2.81
LITAF-211ENST00000572255 KIF21AQ7Z4S6 1674 aa32.62■■■□□ 2.81
LITAF-211ENST00000572255 PDS5BQ9NTI5 1447 aa32.6■■■□□ 2.81
LITAF-211ENST00000572255 DNAJC5Q9H3Z4 198 aa32.6■■■□□ 2.81
LITAF-211ENST00000572255 CADPSQ9ULU8 1353 aa32.59■■■□□ 2.81
LITAF-211ENST00000572255 TOP2AP11388 1531 aaKnown RBP32.46■■■□□ 2.79
LITAF-211ENST00000572255 MRC2Q9UBG0 1479 aa32.33■■■□□ 2.77
LITAF-211ENST00000572255 CFTRP13569 1480 aa32.29■■■□□ 2.76
LITAF-211ENST00000572255 CEP164Q9UPV0 1460 aa32.25■■■□□ 2.75
LITAF-211ENST00000572255 WDR62O43379 1518 aa32.24■■■□□ 2.75
LITAF-211ENST00000572255 FANCD2Q9BXW9 1451 aa32.23■■■□□ 2.75
LITAF-211ENST00000572255 CCDC88BA6NC98 1476 aa32.07■■■□□ 2.72
LITAF-211ENST00000572255 PRDM2Q13029 1718 aa32.03■■■□□ 2.72
LITAF-211ENST00000572255 URB2Q14146 1524 aaKnown RBP31.96■■■□□ 2.71
LITAF-211ENST00000572255 TOPBP1Q92547 1522 aa31.66■■■□□ 2.66
LITAF-211ENST00000572255 ABCC8Q09428 1581 aa31.6■■■□□ 2.65
LITAF-211ENST00000572255 IFT140Q96RY7 1462 aa31.59■■■□□ 2.65
LITAF-211ENST00000572255 DNMBPQ6XZF7 1577 aa31.57■■■□□ 2.64
LITAF-211ENST00000572255 ZNF608Q9ULD9 1512 aaPredicted RBP31.51■■■□□ 2.63
LITAF-211ENST00000572255 OSCARQ8IYS5 282 aa31.44■■■□□ 2.62
LITAF-211ENST00000572255 EIF4G3O43432 1585 aaKnown RBP31.38■■■□□ 2.61
LITAF-211ENST00000572255 TARBP1Q13395 1621 aaKnown RBP31.38■■■□□ 2.61
LITAF-211ENST00000572255 POLA1P09884 1462 aaPredicted RBP31.35■■■□□ 2.61
LITAF-211ENST00000572255 SUPT5HO00267 1087 aaKnown RBP31.35■■■□□ 2.61
LITAF-211ENST00000572255 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
LITAF-211ENST00000572255 AQRO60306 1485 aaKnown RBP eCLIP31.26■■■□□ 2.592e-8■■■□□ 18.1
LITAF-211ENST00000572255 RAD54L2Q9Y4B4 1467 aa31.22■■■□□ 2.59
LITAF-211ENST00000572255 CUX1P39880 1505 aa31.21■■■□□ 2.59
LITAF-211ENST00000572255 SOGA1O94964 1423 aa31.2■■■□□ 2.59
LITAF-211ENST00000572255 FGD5Q6ZNL6 1462 aa31.2■■■□□ 2.58
LITAF-211ENST00000572255 CHD1O14646 1710 aa31.11■■■□□ 2.57
LITAF-211ENST00000572255 TDRD9Q8NDG6 1382 aaKnown RBP31.1■■■□□ 2.57
LITAF-211ENST00000572255 WDR97A6NE52 1622 aa31.07■■■□□ 2.56
LITAF-211ENST00000572255 RIMBP3CA6NJZ7 1639 aa31.06■■■□□ 2.56
LITAF-211ENST00000572255 RIMBP3BA6NNM3 1639 aa31.06■■■□□ 2.56
LITAF-211ENST00000572255 RIMBP3Q9UFD9 1639 aa31.06■■■□□ 2.56
LITAF-211ENST00000572255 FBLN2P98095 1184 aa30.99■■■□□ 2.55
LITAF-211ENST00000572255 ARHGEF11O15085 1522 aa30.97■■■□□ 2.55
LITAF-211ENST00000572255 SNAPC4Q5SXM2 1469 aa30.96■■■□□ 2.55
LITAF-211ENST00000572255 GRIN2BQ13224 1484 aa30.91■■■□□ 2.54
LITAF-211ENST00000572255 MAGI1Q96QZ7 1491 aaPredicted RBP30.89■■■□□ 2.54
LITAF-211ENST00000572255 ABCA10Q8WWZ4 1543 aa30.85■■■□□ 2.53
LITAF-211ENST00000572255 PBRM1Q86U86 1689 aa30.84■■■□□ 2.53
LITAF-211ENST00000572255 GAPVD1Q14C86 1478 aa30.83■■■□□ 2.53
LITAF-211ENST00000572255 ABCA5Q8WWZ7 1642 aa30.8■■■□□ 2.52
LITAF-211ENST00000572255 CHMP7Q8WUX9 453 aaPredicted RBP30.8■■■□□ 2.52
LITAF-211ENST00000572255 BIVM-ERCC5R4GMW8 1640 aa30.8■■■□□ 2.52
LITAF-211ENST00000572255 TOP2BQ02880 1626 aa30.78■■■□□ 2.52
LITAF-211ENST00000572255 SYNJ2O15056 1496 aa30.77■■■□□ 2.52
LITAF-211ENST00000572255 WRNQ14191 1432 aaPredicted RBP eCLIP30.77■■■□□ 2.52
LITAF-211ENST00000572255 SYNJ1O43426 1573 aa30.75■■■□□ 2.51
LITAF-211ENST00000572255 CLASP1Q7Z460 1538 aa30.74■■■□□ 2.51
LITAF-211ENST00000572255 CYB5RLQ6IPT4 315 aa30.7■■■□□ 2.51
LITAF-211ENST00000572255 ARAP1Q96P48 1450 aa30.69■■■□□ 2.5
LITAF-211ENST00000572255 ADAMTS12P58397 1594 aa30.55■■■□□ 2.48
LITAF-211ENST00000572255 GRIN2AQ12879 1464 aa30.52■■■□□ 2.48
LITAF-211ENST00000572255 ERICH3Q5RHP9 1530 aa30.47■■■□□ 2.47
LITAF-211ENST00000572255 FHAD1B1AJZ9 1412 aa30.45■■■□□ 2.46
LITAF-211ENST00000572255 CEP170Q5SW79 1584 aa30.41■■■□□ 2.46
LITAF-211ENST00000572255 NUP160Q12769 1436 aa30.4■■■□□ 2.46
LITAF-211ENST00000572255 ERCC6L2Q5T890 1561 aa30.28■■■□□ 2.44
LITAF-211ENST00000572255 TRHP20396 242 aaPredicted RBP30.27■■■□□ 2.44
LITAF-211ENST00000572255 SHROOM2Q13796 1616 aa30.25■■■□□ 2.43
LITAF-211ENST00000572255 KIF27Q86VH2 1401 aa30.17■■■□□ 2.42
LITAF-211ENST00000572255 IGF1RP08069 1367 aa30.12■■■□□ 2.41
LITAF-211ENST00000572255 RUSC2Q8N2Y8 1516 aa30.12■■■□□ 2.41
LITAF-211ENST00000572255 CUL7Q14999 1698 aa30.1■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms