RNA–Protein interactions for RNA: ENST00000571554.5

RAB40B-204, Transcript of RAB40B, member RAS oncogene family, humanhuman

TSL 4

Gene RAB40B, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40B-204ENST00000571554 NISCHQ9Y2I1 1504 aa34.06■■■■□ 3.04
RAB40B-204ENST00000571554 CCDC180Q9P1Z9 1646 aa30.43■■■□□ 2.46
RAB40B-204ENST00000571554 ABCC9O60706 1549 aa30.27■■■□□ 2.44
RAB40B-204ENST00000571554 RB1CC1Q8TDY2 1594 aa28.85■■■□□ 2.21
RAB40B-204ENST00000571554 DCAF8L2P0C7V8 631 aa28.74■■■□□ 2.19
RAB40B-204ENST00000571554 NACADO15069 1562 aa28.69■■■□□ 2.18
RAB40B-204ENST00000571554 MYO15BQ96JP2 1530 aa28.3■■■□□ 2.12
RAB40B-204ENST00000571554 ZCCHC6Q5VYS8 1495 aaKnown RBP28.29■■■□□ 2.12
RAB40B-204ENST00000571554 UNC13AQ9UPW8 1703 aa28.29■■■□□ 2.12
RAB40B-204ENST00000571554 PABPN1Q86U42 306 aaKnown RBP eCLIP28.24■■■□□ 2.11
RAB40B-204ENST00000571554 DNAJC5BQ9UF47 199 aa28.14■■■□□ 2.1
RAB40B-204ENST00000571554 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.08
RAB40B-204ENST00000571554 BICRAQ9NZM4 1560 aa28.03■■■□□ 2.08
RAB40B-204ENST00000571554 SCRIBQ14160 1630 aa27.86■■■□□ 2.05
RAB40B-204ENST00000571554 SHROOM4Q9ULL8 1493 aa27.55■■■□□ 2
RAB40B-204ENST00000571554 CC2D2AQ9P2K1 1620 aa27.33■■□□□ 1.97
RAB40B-204ENST00000571554 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
RAB40B-204ENST00000571554 CECR2Q9BXF3 1484 aa27.19■■□□□ 1.94
RAB40B-204ENST00000571554 SMARCA4P51532 1647 aa26.54■■□□□ 1.84
RAB40B-204ENST00000571554 ATAD2BQ9ULI0 1458 aa26.48■■□□□ 1.83
RAB40B-204ENST00000571554 NCAPD3P42695 1498 aa26.47■■□□□ 1.83
RAB40B-204ENST00000571554 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
RAB40B-204ENST00000571554 SMARCA2P51531 1590 aa26.39■■□□□ 1.82
RAB40B-204ENST00000571554 HMGXB3Q12766 1538 aa26.32■■□□□ 1.8
RAB40B-204ENST00000571554 MROH2BQ7Z745 1585 aa26.3■■□□□ 1.8
RAB40B-204ENST00000571554 BAZ1BQ9UIG0 1483 aaKnown RBP26.25■■□□□ 1.79
RAB40B-204ENST00000571554 PEG3Q9GZU2 1588 aa26.21■■□□□ 1.79
RAB40B-204ENST00000571554 NESP48681 1621 aa26.1■■□□□ 1.77
RAB40B-204ENST00000571554 ERCC6Q03468 1493 aa26.09■■□□□ 1.77
RAB40B-204ENST00000571554 WIZO95785 1651 aa26.03■■□□□ 1.76
RAB40B-204ENST00000571554 CUX2O14529 1486 aa25.87■■□□□ 1.73
RAB40B-204ENST00000571554 LAMC3Q9Y6N6 1575 aa25.86■■□□□ 1.73
RAB40B-204ENST00000571554 RSF1Q96T23 1441 aaPredicted RBP25.82■■□□□ 1.72
RAB40B-204ENST00000571554 KIF21AQ7Z4S6 1674 aa25.77■■□□□ 1.72
RAB40B-204ENST00000571554 THOC2Q8NI27 1593 aaKnown RBP25.73■■□□□ 1.71
RAB40B-204ENST00000571554 CADPSQ9ULU8 1353 aa25.7■■□□□ 1.71
RAB40B-204ENST00000571554 PDS5BQ9NTI5 1447 aa25.69■■□□□ 1.7
RAB40B-204ENST00000571554 TOP2AP11388 1531 aaKnown RBP25.66■■□□□ 1.7
RAB40B-204ENST00000571554 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
RAB40B-204ENST00000571554 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
RAB40B-204ENST00000571554 CFTRP13569 1480 aa25.47■■□□□ 1.67
RAB40B-204ENST00000571554 FANCD2Q9BXW9 1451 aa25.45■■□□□ 1.66
RAB40B-204ENST00000571554 CEP164Q9UPV0 1460 aa25.45■■□□□ 1.66
RAB40B-204ENST00000571554 WDR62O43379 1518 aa25.41■■□□□ 1.66
RAB40B-204ENST00000571554 CCDC88BA6NC98 1476 aa25.37■■□□□ 1.65
RAB40B-204ENST00000571554 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
RAB40B-204ENST00000571554 URB2Q14146 1524 aaKnown RBP25.24■■□□□ 1.63
RAB40B-204ENST00000571554 TOPBP1Q92547 1522 aa25■■□□□ 1.59
RAB40B-204ENST00000571554 SUPT5HO00267 1087 aaKnown RBP24.97■■□□□ 1.59
RAB40B-204ENST00000571554 DNMBPQ6XZF7 1577 aa24.93■■□□□ 1.58
RAB40B-204ENST00000571554 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
RAB40B-204ENST00000571554 IFT140Q96RY7 1462 aa24.89■■□□□ 1.58
RAB40B-204ENST00000571554 ABCC8Q09428 1581 aa24.88■■□□□ 1.57
RAB40B-204ENST00000571554 EIF4G3O43432 1585 aaKnown RBP24.78■■□□□ 1.56
RAB40B-204ENST00000571554 POLA1P09884 1462 aaPredicted RBP24.77■■□□□ 1.56
RAB40B-204ENST00000571554 TARBP1Q13395 1621 aaKnown RBP24.76■■□□□ 1.55
RAB40B-204ENST00000571554 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
RAB40B-204ENST00000571554 RAD54L2Q9Y4B4 1467 aa24.71■■□□□ 1.55
RAB40B-204ENST00000571554 AQRO60306 1485 aaKnown RBP eCLIP24.7■■□□□ 1.55
RAB40B-204ENST00000571554 CUX1P39880 1505 aa24.7■■□□□ 1.54
RAB40B-204ENST00000571554 TRIM41Q8WV44 630 aa24.68■■□□□ 1.54
RAB40B-204ENST00000571554 FGD5Q6ZNL6 1462 aa24.67■■□□□ 1.54
RAB40B-204ENST00000571554 SOGA1O94964 1423 aa24.64■■□□□ 1.54
RAB40B-204ENST00000571554 TDRD9Q8NDG6 1382 aaKnown RBP24.6■■□□□ 1.53
RAB40B-204ENST00000571554 CHD1O14646 1710 aa24.57■■□□□ 1.52
RAB40B-204ENST00000571554 FBLN2P98095 1184 aa24.52■■□□□ 1.52
RAB40B-204ENST00000571554 WDR97A6NE52 1622 aa24.48■■□□□ 1.51
RAB40B-204ENST00000571554 RIMBP3CA6NJZ7 1639 aa24.47■■□□□ 1.51
RAB40B-204ENST00000571554 RIMBP3BA6NNM3 1639 aa24.47■■□□□ 1.51
RAB40B-204ENST00000571554 RIMBP3Q9UFD9 1639 aa24.47■■□□□ 1.51
RAB40B-204ENST00000571554 SNAPC4Q5SXM2 1469 aa24.46■■□□□ 1.51
RAB40B-204ENST00000571554 ARHGEF11O15085 1522 aa24.4■■□□□ 1.5
RAB40B-204ENST00000571554 GRIN2BQ13224 1484 aa24.38■■□□□ 1.49
RAB40B-204ENST00000571554 PBRM1Q86U86 1689 aa24.38■■□□□ 1.49
RAB40B-204ENST00000571554 SYNJ1O43426 1573 aa24.37■■□□□ 1.49
RAB40B-204ENST00000571554 GAPVD1Q14C86 1478 aa24.36■■□□□ 1.49
RAB40B-204ENST00000571554 WRNQ14191 1432 aaPredicted RBP eCLIP24.35■■□□□ 1.49
RAB40B-204ENST00000571554 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
RAB40B-204ENST00000571554 ABCA10Q8WWZ4 1543 aa24.35■■□□□ 1.49
RAB40B-204ENST00000571554 MAGI1Q96QZ7 1491 aaPredicted RBP24.34■■□□□ 1.49
RAB40B-204ENST00000571554 TOP2BQ02880 1626 aa24.34■■□□□ 1.49
RAB40B-204ENST00000571554 ABCA5Q8WWZ7 1642 aa24.32■■□□□ 1.48
RAB40B-204ENST00000571554 CHMP7Q8WUX9 453 aaPredicted RBP24.32■■□□□ 1.48
RAB40B-204ENST00000571554 SYNJ2O15056 1496 aa24.27■■□□□ 1.48
RAB40B-204ENST00000571554 CLASP1Q7Z460 1538 aa24.23■■□□□ 1.47
RAB40B-204ENST00000571554 CYB5RLQ6IPT4 315 aa24.22■■□□□ 1.47
RAB40B-204ENST00000571554 ARAP1Q96P48 1450 aa24.19■■□□□ 1.46
RAB40B-204ENST00000571554 ADAMTS12P58397 1594 aa24.14■■□□□ 1.45
RAB40B-204ENST00000571554 GRIN2AQ12879 1464 aa24.09■■□□□ 1.45
RAB40B-204ENST00000571554 ERICH3Q5RHP9 1530 aa24.05■■□□□ 1.44
RAB40B-204ENST00000571554 FHAD1B1AJZ9 1412 aa24.03■■□□□ 1.44
RAB40B-204ENST00000571554 CEP170Q5SW79 1584 aa24.03■■□□□ 1.44
RAB40B-204ENST00000571554 NUP160Q12769 1436 aa23.97■■□□□ 1.43
RAB40B-204ENST00000571554 ERCC6L2Q5T890 1561 aa23.95■■□□□ 1.42
RAB40B-204ENST00000571554 TRHP20396 242 aaPredicted RBP23.88■■□□□ 1.41
RAB40B-204ENST00000571554 KIF27Q86VH2 1401 aa23.85■■□□□ 1.41
RAB40B-204ENST00000571554 SHROOM2Q13796 1616 aa23.85■■□□□ 1.41
RAB40B-204ENST00000571554 IGF1RP08069 1367 aa23.81■■□□□ 1.4
RAB40B-204ENST00000571554 RUSC2Q8N2Y8 1516 aa23.79■■□□□ 1.4
RAB40B-204ENST00000571554 CUL7Q14999 1698 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms