RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
VPS53-207ENST00000570510 ABCC9O60706 1549 aa26.13■■□□□ 1.77
VPS53-207ENST00000570510 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
VPS53-207ENST00000570510 DNAJC5BQ9UF47 199 aa24.97■■□□□ 1.59
VPS53-207ENST00000570510 RB1CC1Q8TDY2 1594 aa24.58■■□□□ 1.52
VPS53-207ENST00000570510 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
VPS53-207ENST00000570510 PABPN1Q86U42 306 aaKnown RBP eCLIP24.3■■□□□ 1.48
VPS53-207ENST00000570510 NACADO15069 1562 aa24.24■■□□□ 1.47
VPS53-207ENST00000570510 UNC13AQ9UPW8 1703 aa23.84■■□□□ 1.41
VPS53-207ENST00000570510 BICRAQ9NZM4 1560 aa23.75■■□□□ 1.39
VPS53-207ENST00000570510 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
VPS53-207ENST00000570510 CECR2Q9BXF3 1484 aa23.59■■□□□ 1.37
VPS53-207ENST00000570510 CC2D2AQ9P2K1 1620 aa23.49■■□□□ 1.35
VPS53-207ENST00000570510 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
VPS53-207ENST00000570510 DNAJC5Q9H3Z4 198 aa23.42■■□□□ 1.34
VPS53-207ENST00000570510 EIF4G1Q04637 1599 aaKnown RBP23.3■■□□□ 1.32
VPS53-207ENST00000570510 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
VPS53-207ENST00000570510 DCAF1Q9Y4B6 1507 aa23.14■■□□□ 1.3
VPS53-207ENST00000570510 ZCCHC6Q5VYS8 1495 aaKnown RBP23.14■■□□□ 1.29
VPS53-207ENST00000570510 CUX2O14529 1486 aa22.72■■□□□ 1.23
VPS53-207ENST00000570510 ERCC6Q03468 1493 aa22.68■■□□□ 1.22
VPS53-207ENST00000570510 NCAPD3P42695 1498 aa22.39■■□□□ 1.17
VPS53-207ENST00000570510 TRIM41Q8WV44 630 aa22.29■■□□□ 1.16
VPS53-207ENST00000570510 ATAD2BQ9ULI0 1458 aa22.24■■□□□ 1.15
VPS53-207ENST00000570510 NESP48681 1621 aa22.22■■□□□ 1.15
VPS53-207ENST00000570510 SMARCA2P51531 1590 aa22.17■■□□□ 1.14
VPS53-207ENST00000570510 HMGXB3Q12766 1538 aa22.14■■□□□ 1.13
VPS53-207ENST00000570510 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
VPS53-207ENST00000570510 SMARCA4P51532 1647 aa22.03■■□□□ 1.12
VPS53-207ENST00000570510 THOC2Q8NI27 1593 aaKnown RBP22.03■■□□□ 1.12
VPS53-207ENST00000570510 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
VPS53-207ENST00000570510 LAMC3Q9Y6N6 1575 aa21.97■■□□□ 1.11
VPS53-207ENST00000570510 BAZ1AQ9NRL2 1556 aaPredicted RBP21.9■■□□□ 1.1
VPS53-207ENST00000570510 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
VPS53-207ENST00000570510 PEG3Q9GZU2 1588 aa21.78■■□□□ 1.08
VPS53-207ENST00000570510 MRC2Q9UBG0 1479 aa21.75■■□□□ 1.07
VPS53-207ENST00000570510 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
VPS53-207ENST00000570510 OSCARQ8IYS5 282 aa21.73■■□□□ 1.07
VPS53-207ENST00000570510 MROH2BQ7Z745 1585 aa21.65■■□□□ 1.06
VPS53-207ENST00000570510 WDR62O43379 1518 aa21.65■■□□□ 1.06
VPS53-207ENST00000570510 CEP164Q9UPV0 1460 aa21.58■■□□□ 1.04
VPS53-207ENST00000570510 FANCD2Q9BXW9 1451 aa21.49■■□□□ 1.03
VPS53-207ENST00000570510 WIZO95785 1651 aa21.36■■□□□ 1.01
VPS53-207ENST00000570510 RIMBP3CA6NJZ7 1639 aa21.33■■□□□ 1
VPS53-207ENST00000570510 RIMBP3BA6NNM3 1639 aa21.33■■□□□ 1
VPS53-207ENST00000570510 RIMBP3Q9UFD9 1639 aa21.33■■□□□ 1
VPS53-207ENST00000570510 CFTRP13569 1480 aa21.32■■□□□ 1
VPS53-207ENST00000570510 TRHP20396 242 aaPredicted RBP21.31■■□□□ 1
VPS53-207ENST00000570510 URB2Q14146 1524 aaKnown RBP21.28■■□□□ 1
VPS53-207ENST00000570510 CYB5RLQ6IPT4 315 aa21.27■■□□□ 1
VPS53-207ENST00000570510 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
VPS53-207ENST00000570510 AEBP2Q6ZN18 517 aaPredicted RBP21.16■□□□□ 0.98
VPS53-207ENST00000570510 IFT140Q96RY7 1462 aa21.14■□□□□ 0.98
VPS53-207ENST00000570510 ZNF608Q9ULD9 1512 aaPredicted RBP21.14■□□□□ 0.97
VPS53-207ENST00000570510 FBLN2P98095 1184 aa21.09■□□□□ 0.97
VPS53-207ENST00000570510 TOP2AP11388 1531 aaKnown RBP21.06■□□□□ 0.96
VPS53-207ENST00000570510 RSF1Q96T23 1441 aaPredicted RBP21.03■□□□□ 0.96
VPS53-207ENST00000570510 TOPBP1Q92547 1522 aa20.98■□□□□ 0.95
VPS53-207ENST00000570510 ARAP1Q96P48 1450 aa20.97■□□□□ 0.95
VPS53-207ENST00000570510 EIF4G3O43432 1585 aaKnown RBP20.96■□□□□ 0.95
VPS53-207ENST00000570510 ABCC8Q09428 1581 aa20.95■□□□□ 0.94
VPS53-207ENST00000570510 PRDM2Q13029 1718 aa20.94■□□□□ 0.94
VPS53-207ENST00000570510 AQRO60306 1485 aaKnown RBP eCLIP20.93■□□□□ 0.94
VPS53-207ENST00000570510 CHD1O14646 1710 aa20.89■□□□□ 0.93
VPS53-207ENST00000570510 CCDC88BA6NC98 1476 aa20.87■□□□□ 0.93
VPS53-207ENST00000570510 DNMBPQ6XZF7 1577 aa20.84■□□□□ 0.93
VPS53-207ENST00000570510 CHMP7Q8WUX9 453 aaPredicted RBP20.79■□□□□ 0.92
VPS53-207ENST00000570510 TARBP1Q13395 1621 aaKnown RBP20.76■□□□□ 0.91
VPS53-207ENST00000570510 TDRD9Q8NDG6 1382 aaKnown RBP20.74■□□□□ 0.91
VPS53-207ENST00000570510 POLA1P09884 1462 aaPredicted RBP20.72■□□□□ 0.91
VPS53-207ENST00000570510 SOGA1O94964 1423 aa20.7■□□□□ 0.9
VPS53-207ENST00000570510 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
VPS53-207ENST00000570510 SNAPC4Q5SXM2 1469 aa20.67■□□□□ 0.9
VPS53-207ENST00000570510 SYNJ1O43426 1573 aa20.67■□□□□ 0.9
VPS53-207ENST00000570510 CLASP1Q7Z460 1538 aa20.63■□□□□ 0.89
VPS53-207ENST00000570510 MAGI1Q96QZ7 1491 aaPredicted RBP20.59■□□□□ 0.89
VPS53-207ENST00000570510 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
VPS53-207ENST00000570510 GRIN2BQ13224 1484 aa20.56■□□□□ 0.88
VPS53-207ENST00000570510 SYNJ2O15056 1496 aa20.54■□□□□ 0.88
VPS53-207ENST00000570510 WDR97A6NE52 1622 aa20.53■□□□□ 0.88
VPS53-207ENST00000570510 FGD5Q6ZNL6 1462 aa20.53■□□□□ 0.88
VPS53-207ENST00000570510 CUX1P39880 1505 aa20.37■□□□□ 0.85
VPS53-207ENST00000570510 PBRM1Q86U86 1689 aa20.33■□□□□ 0.85
VPS53-207ENST00000570510 ERCC6L2Q5T890 1561 aa20.28■□□□□ 0.84
VPS53-207ENST00000570510 GRIN2AQ12879 1464 aa20.26■□□□□ 0.83
VPS53-207ENST00000570510 ABCA10Q8WWZ4 1543 aa20.24■□□□□ 0.83
VPS53-207ENST00000570510 NPM1P06748 294 aaKnown RBP eCLIP20.24■□□□□ 0.83
VPS53-207ENST00000570510 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
VPS53-207ENST00000570510 FAM69CQ0P6D2 419 aa20.22■□□□□ 0.83
VPS53-207ENST00000570510 ABCA5Q8WWZ7 1642 aa20.2■□□□□ 0.82
VPS53-207ENST00000570510 NUP160Q12769 1436 aa20.18■□□□□ 0.82
VPS53-207ENST00000570510 WRNQ14191 1432 aaPredicted RBP eCLIP20.15■□□□□ 0.82
VPS53-207ENST00000570510 ILDR1Q86SU0 546 aaPredicted RBP20.14■□□□□ 0.81
VPS53-207ENST00000570510 KIF13AQ9H1H9 1805 aa20.13■□□□□ 0.81
VPS53-207ENST00000570510 PRG4Q92954 1404 aaPredicted RBP20.13■□□□□ 0.81
VPS53-207ENST00000570510 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
VPS53-207ENST00000570510 ADAMTS12P58397 1594 aa20.12■□□□□ 0.81
VPS53-207ENST00000570510 JPH4Q96JJ6 628 aa20.11■□□□□ 0.81
VPS53-207ENST00000570510 SHROOM2Q13796 1616 aa20.09■□□□□ 0.81
VPS53-207ENST00000570510 KDM4FA0A1W2PPD8 638 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms