RNA–Protein interactions for RNA: ENST00000569715.5

PDXDC1-216, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene PDXDC1, Length 3,775 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-216ENST00000569715 NISCHQ9Y2I1 1504 aa24.89■■□□□ 1.57
PDXDC1-216ENST00000569715 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
PDXDC1-216ENST00000569715 ZCCHC6Q5VYS8 1495 aaKnown RBP20.92■□□□□ 0.94
PDXDC1-216ENST00000569715 DCAF8L2P0C7V8 631 aa20.59■□□□□ 0.89
PDXDC1-216ENST00000569715 ABCC9O60706 1549 aa20.59■□□□□ 0.89
PDXDC1-216ENST00000569715 DCAF1Q9Y4B6 1507 aa20.52■□□□□ 0.88
PDXDC1-216ENST00000569715 SHROOM4Q9ULL8 1493 aa20.4■□□□□ 0.86
PDXDC1-216ENST00000569715 MYO15BQ96JP2 1530 aa20.26■□□□□ 0.83
PDXDC1-216ENST00000569715 NACADO15069 1562 aa20.18■□□□□ 0.82
PDXDC1-216ENST00000569715 SCRIBQ14160 1630 aa20.03■□□□□ 0.8
PDXDC1-216ENST00000569715 RB1CC1Q8TDY2 1594 aa20.02■□□□□ 0.8
PDXDC1-216ENST00000569715 UNC13AQ9UPW8 1703 aa19.73■□□□□ 0.75
PDXDC1-216ENST00000569715 SUPT5HO00267 1087 aaKnown RBP19.57■□□□□ 0.72
PDXDC1-216ENST00000569715 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
PDXDC1-216ENST00000569715 PABPN1Q86U42 306 aaKnown RBP eCLIP19.42■□□□□ 0.78e-6■□□□□ 8.9
PDXDC1-216ENST00000569715 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
PDXDC1-216ENST00000569715 RSF1Q96T23 1441 aaPredicted RBP19.32■□□□□ 0.68
PDXDC1-216ENST00000569715 MROH2BQ7Z745 1585 aa19.27■□□□□ 0.68
PDXDC1-216ENST00000569715 BAZ1AQ9NRL2 1556 aaPredicted RBP19.2■□□□□ 0.66
PDXDC1-216ENST00000569715 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
PDXDC1-216ENST00000569715 WIZO95785 1651 aa19.14■□□□□ 0.65
PDXDC1-216ENST00000569715 PEG3Q9GZU2 1588 aa18.88■□□□□ 0.61
PDXDC1-216ENST00000569715 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
PDXDC1-216ENST00000569715 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
PDXDC1-216ENST00000569715 ATAD2BQ9ULI0 1458 aa18.82■□□□□ 0.6
PDXDC1-216ENST00000569715 SMARCA2P51531 1590 aa18.78■□□□□ 0.6
PDXDC1-216ENST00000569715 BAZ1BQ9UIG0 1483 aaKnown RBP18.72■□□□□ 0.59
PDXDC1-216ENST00000569715 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
PDXDC1-216ENST00000569715 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
PDXDC1-216ENST00000569715 NCAPD3P42695 1498 aa18.63■□□□□ 0.57
PDXDC1-216ENST00000569715 CC2D2AQ9P2K1 1620 aa18.62■□□□□ 0.57
PDXDC1-216ENST00000569715 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
PDXDC1-216ENST00000569715 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
PDXDC1-216ENST00000569715 TRIM41Q8WV44 630 aa18.34■□□□□ 0.53
PDXDC1-216ENST00000569715 CFTRP13569 1480 aa18.23■□□□□ 0.51
PDXDC1-216ENST00000569715 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
PDXDC1-216ENST00000569715 PRDM2Q13029 1718 aa18.17■□□□□ 0.5
PDXDC1-216ENST00000569715 WRNQ14191 1432 aaPredicted RBP eCLIP18.17■□□□□ 0.5
PDXDC1-216ENST00000569715 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
PDXDC1-216ENST00000569715 SYNJ1O43426 1573 aa18.16■□□□□ 0.5
PDXDC1-216ENST00000569715 NESP48681 1621 aa18.1■□□□□ 0.49
PDXDC1-216ENST00000569715 FAM9AQ8IZU1 332 aaPredicted RBP18.09■□□□□ 0.49
PDXDC1-216ENST00000569715 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
PDXDC1-216ENST00000569715 TOP2BQ02880 1626 aa18.03■□□□□ 0.48
PDXDC1-216ENST00000569715 BIVM-ERCC5R4GMW8 1640 aa18.02■□□□□ 0.48
PDXDC1-216ENST00000569715 CUX1P39880 1505 aa18.02■□□□□ 0.47
PDXDC1-216ENST00000569715 LAMC3Q9Y6N6 1575 aa18■□□□□ 0.47
PDXDC1-216ENST00000569715 SOGA1O94964 1423 aa17.99■□□□□ 0.47
PDXDC1-216ENST00000569715 FANCD2Q9BXW9 1451 aa17.99■□□□□ 0.47
PDXDC1-216ENST00000569715 RUSC2Q8N2Y8 1516 aa17.95■□□□□ 0.46
PDXDC1-216ENST00000569715 EHMT2Q96KQ7 1210 aa17.89■□□□□ 0.46
PDXDC1-216ENST00000569715 KIF21AQ7Z4S6 1674 aa17.88■□□□□ 0.45
PDXDC1-216ENST00000569715 CEP164Q9UPV0 1460 aa17.86■□□□□ 0.45
PDXDC1-216ENST00000569715 PDS5BQ9NTI5 1447 aa17.84■□□□□ 0.45
PDXDC1-216ENST00000569715 EEA1Q15075 1411 aa17.83■□□□□ 0.45
PDXDC1-216ENST00000569715 DNMBPQ6XZF7 1577 aa17.82■□□□□ 0.44
PDXDC1-216ENST00000569715 FGD5Q6ZNL6 1462 aa17.81■□□□□ 0.44
PDXDC1-216ENST00000569715 TOPBP1Q92547 1522 aa17.8■□□□□ 0.44
PDXDC1-216ENST00000569715 URB2Q14146 1524 aaKnown RBP17.79■□□□□ 0.44
PDXDC1-216ENST00000569715 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
PDXDC1-216ENST00000569715 POLA1P09884 1462 aaPredicted RBP17.72■□□□□ 0.43
PDXDC1-216ENST00000569715 RAD54L2Q9Y4B4 1467 aa17.69■□□□□ 0.42
PDXDC1-216ENST00000569715 CUX2O14529 1486 aa17.68■□□□□ 0.42
PDXDC1-216ENST00000569715 KIF27Q86VH2 1401 aa17.68■□□□□ 0.42
PDXDC1-216ENST00000569715 KIF21BO75037 1637 aa17.68■□□□□ 0.42
PDXDC1-216ENST00000569715 MRC2Q9UBG0 1479 aa17.65■□□□□ 0.42
PDXDC1-216ENST00000569715 GOLGA3Q08378 1498 aa17.65■□□□□ 0.42
PDXDC1-216ENST00000569715 RAPGEF2Q9Y4G8 1499 aa17.62■□□□□ 0.41
PDXDC1-216ENST00000569715 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
PDXDC1-216ENST00000569715 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
PDXDC1-216ENST00000569715 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
PDXDC1-216ENST00000569715 PRXQ9BXM0 1461 aa17.59■□□□□ 0.41
PDXDC1-216ENST00000569715 UBTFP17480 764 aaKnown RBP17.57■□□□□ 0.4
PDXDC1-216ENST00000569715 TNIKQ9UKE5 1360 aa17.57■□□□□ 0.4
PDXDC1-216ENST00000569715 WDR62O43379 1518 aa17.57■□□□□ 0.4
PDXDC1-216ENST00000569715 THOC2Q8NI27 1593 aaKnown RBP17.56■□□□□ 0.4
PDXDC1-216ENST00000569715 TARBP1Q13395 1621 aaKnown RBP17.55■□□□□ 0.4
PDXDC1-216ENST00000569715 IGF1RP08069 1367 aa17.55■□□□□ 0.4
PDXDC1-216ENST00000569715 ERICH3Q5RHP9 1530 aa17.54■□□□□ 0.4
PDXDC1-216ENST00000569715 CEP162Q5TB80 1403 aa17.53■□□□□ 0.4
PDXDC1-216ENST00000569715 ABCA5Q8WWZ7 1642 aa17.51■□□□□ 0.39
PDXDC1-216ENST00000569715 TDRD9Q8NDG6 1382 aaKnown RBP17.5■□□□□ 0.39
PDXDC1-216ENST00000569715 CARMIL1Q5VZK9 1371 aa17.45■□□□□ 0.38
PDXDC1-216ENST00000569715 GAPVD1Q14C86 1478 aa17.45■□□□□ 0.38
PDXDC1-216ENST00000569715 IFT140Q96RY7 1462 aa17.41■□□□□ 0.38
PDXDC1-216ENST00000569715 CUL7Q14999 1698 aa17.41■□□□□ 0.38
PDXDC1-216ENST00000569715 ZNF608Q9ULD9 1512 aaPredicted RBP17.4■□□□□ 0.38
PDXDC1-216ENST00000569715 AQRO60306 1485 aaKnown RBP eCLIP17.4■□□□□ 0.383e-7■■■■□ 23.4
PDXDC1-216ENST00000569715 PBRM1Q86U86 1689 aa17.39■□□□□ 0.38
PDXDC1-216ENST00000569715 CLIP1P30622 1438 aa17.38■□□□□ 0.37
PDXDC1-216ENST00000569715 RANGAP1P46060 587 aaPredicted RBP17.38■□□□□ 0.37
PDXDC1-216ENST00000569715 EIF4G3O43432 1585 aaKnown RBP17.33■□□□□ 0.37
PDXDC1-216ENST00000569715 GRIN2BQ13224 1484 aa17.29■□□□□ 0.36
PDXDC1-216ENST00000569715 ADAMTS12P58397 1594 aa17.29■□□□□ 0.36
PDXDC1-216ENST00000569715 CTTNBP2Q8WZ74 1663 aa17.26■□□□□ 0.35
PDXDC1-216ENST00000569715 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
PDXDC1-216ENST00000569715 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
PDXDC1-216ENST00000569715 FHAD1B1AJZ9 1412 aa17.23■□□□□ 0.35
PDXDC1-216ENST00000569715 ARHGAP35Q9NRY4 1499 aa17.23■□□□□ 0.35
PDXDC1-216ENST00000569715 SNAPC4Q5SXM2 1469 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms