RNA–Protein interactions for RNA: ENST00000569653.1

GTF3C1-211, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 2

Gene GTF3C1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-211ENST00000569653 NISCHQ9Y2I1 1504 aa34.86■■■■□ 3.17
GTF3C1-211ENST00000569653 CCDC180Q9P1Z9 1646 aa31.24■■■□□ 2.59
GTF3C1-211ENST00000569653 ABCC9O60706 1549 aa31.08■■■□□ 2.57
GTF3C1-211ENST00000569653 RB1CC1Q8TDY2 1594 aa29.6■■■□□ 2.33
GTF3C1-211ENST00000569653 NACADO15069 1562 aa29.43■■■□□ 2.3
GTF3C1-211ENST00000569653 DCAF8L2P0C7V8 631 aa29.21■■■□□ 2.27
GTF3C1-211ENST00000569653 UNC13AQ9UPW8 1703 aa29.13■■■□□ 2.25
GTF3C1-211ENST00000569653 DNAJC5BQ9UF47 199 aa29.1■■■□□ 2.25
GTF3C1-211ENST00000569653 MYO15BQ96JP2 1530 aa29.08■■■□□ 2.25
GTF3C1-211ENST00000569653 ZCCHC6Q5VYS8 1495 aaKnown RBP28.95■■■□□ 2.22
GTF3C1-211ENST00000569653 PABPN1Q86U42 306 aaKnown RBP eCLIP28.93■■■□□ 2.22
GTF3C1-211ENST00000569653 BICRAQ9NZM4 1560 aa28.88■■■□□ 2.21
GTF3C1-211ENST00000569653 DCAF1Q9Y4B6 1507 aa28.78■■■□□ 2.2
GTF3C1-211ENST00000569653 SCRIBQ14160 1630 aa28.51■■■□□ 2.15
GTF3C1-211ENST00000569653 SHROOM4Q9ULL8 1493 aa28.33■■■□□ 2.13
GTF3C1-211ENST00000569653 CC2D2AQ9P2K1 1620 aa28.11■■■□□ 2.09
GTF3C1-211ENST00000569653 EIF4G1Q04637 1599 aaKnown RBP28.08■■■□□ 2.09
GTF3C1-211ENST00000569653 CECR2Q9BXF3 1484 aa27.95■■■□□ 2.06
GTF3C1-211ENST00000569653 SMARCA4P51532 1647 aa27.19■■□□□ 1.94
GTF3C1-211ENST00000569653 NCAPD3P42695 1498 aa27.19■■□□□ 1.94
GTF3C1-211ENST00000569653 ATAD2BQ9ULI0 1458 aa27.16■■□□□ 1.94
GTF3C1-211ENST00000569653 SMARCA2P51531 1590 aa27.02■■□□□ 1.92
GTF3C1-211ENST00000569653 BAZ1AQ9NRL2 1556 aaPredicted RBP27.01■■□□□ 1.92
GTF3C1-211ENST00000569653 HMGXB3Q12766 1538 aa27.01■■□□□ 1.91
GTF3C1-211ENST00000569653 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
GTF3C1-211ENST00000569653 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
GTF3C1-211ENST00000569653 BAZ1BQ9UIG0 1483 aaKnown RBP26.86■■□□□ 1.89
GTF3C1-211ENST00000569653 NESP48681 1621 aa26.8■■□□□ 1.88
GTF3C1-211ENST00000569653 ERCC6Q03468 1493 aa26.73■■□□□ 1.87
GTF3C1-211ENST00000569653 CUX2O14529 1486 aa26.66■■□□□ 1.86
GTF3C1-211ENST00000569653 WIZO95785 1651 aa26.62■■□□□ 1.85
GTF3C1-211ENST00000569653 LAMC3Q9Y6N6 1575 aa26.54■■□□□ 1.84
GTF3C1-211ENST00000569653 THOC2Q8NI27 1593 aaKnown RBP26.52■■□□□ 1.84
GTF3C1-211ENST00000569653 KIF21AQ7Z4S6 1674 aa26.49■■□□□ 1.83
GTF3C1-211ENST00000569653 DNAJC5Q9H3Z4 198 aa26.48■■□□□ 1.83
GTF3C1-211ENST00000569653 RSF1Q96T23 1441 aaPredicted RBP26.37■■□□□ 1.81
GTF3C1-211ENST00000569653 CADPSQ9ULU8 1353 aa26.33■■□□□ 1.81
GTF3C1-211ENST00000569653 PDS5BQ9NTI5 1447 aa26.31■■□□□ 1.8
GTF3C1-211ENST00000569653 TOP2AP11388 1531 aaKnown RBP26.23■■□□□ 1.79
GTF3C1-211ENST00000569653 MRC2Q9UBG0 1479 aa26.16■■□□□ 1.78
GTF3C1-211ENST00000569653 WDR62O43379 1518 aa26.13■■□□□ 1.77
GTF3C1-211ENST00000569653 CFTRP13569 1480 aa26.11■■□□□ 1.77
GTF3C1-211ENST00000569653 FANCD2Q9BXW9 1451 aa26.07■■□□□ 1.76
GTF3C1-211ENST00000569653 CEP164Q9UPV0 1460 aa26.06■■□□□ 1.76
GTF3C1-211ENST00000569653 PRDM2Q13029 1718 aa25.94■■□□□ 1.74
GTF3C1-211ENST00000569653 CCDC88BA6NC98 1476 aa25.94■■□□□ 1.74
GTF3C1-211ENST00000569653 URB2Q14146 1524 aaKnown RBP25.92■■□□□ 1.74
GTF3C1-211ENST00000569653 TOPBP1Q92547 1522 aa25.63■■□□□ 1.69
GTF3C1-211ENST00000569653 ZNF608Q9ULD9 1512 aaPredicted RBP25.58■■□□□ 1.68
GTF3C1-211ENST00000569653 DNMBPQ6XZF7 1577 aa25.53■■□□□ 1.68
GTF3C1-211ENST00000569653 IFT140Q96RY7 1462 aa25.53■■□□□ 1.68
GTF3C1-211ENST00000569653 ABCC8Q09428 1581 aa25.45■■□□□ 1.66
GTF3C1-211ENST00000569653 TARBP1Q13395 1621 aaKnown RBP25.44■■□□□ 1.66
GTF3C1-211ENST00000569653 EIF4G3O43432 1585 aaKnown RBP25.44■■□□□ 1.66
GTF3C1-211ENST00000569653 OSCARQ8IYS5 282 aa25.39■■□□□ 1.66
GTF3C1-211ENST00000569653 POLA1P09884 1462 aaPredicted RBP25.37■■□□□ 1.65
GTF3C1-211ENST00000569653 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
GTF3C1-211ENST00000569653 AQRO60306 1485 aaKnown RBP eCLIP25.31■■□□□ 1.646e-7■■■■□ 25.6
GTF3C1-211ENST00000569653 RAD54L2Q9Y4B4 1467 aa25.3■■□□□ 1.64
GTF3C1-211ENST00000569653 CUX1P39880 1505 aa25.28■■□□□ 1.64
GTF3C1-211ENST00000569653 CHD1O14646 1710 aa25.26■■□□□ 1.63
GTF3C1-211ENST00000569653 FGD5Q6ZNL6 1462 aa25.23■■□□□ 1.63
GTF3C1-211ENST00000569653 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
GTF3C1-211ENST00000569653 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
GTF3C1-211ENST00000569653 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
GTF3C1-211ENST00000569653 SUPT5HO00267 1087 aaKnown RBP25.21■■□□□ 1.63
GTF3C1-211ENST00000569653 SOGA1O94964 1423 aa25.19■■□□□ 1.62
GTF3C1-211ENST00000569653 TDRD9Q8NDG6 1382 aaKnown RBP25.16■■□□□ 1.62
GTF3C1-211ENST00000569653 WDR97A6NE52 1622 aa25.13■■□□□ 1.61
GTF3C1-211ENST00000569653 ARHGEF11O15085 1522 aa25.12■■□□□ 1.61
GTF3C1-211ENST00000569653 SNAPC4Q5SXM2 1469 aa25.06■■□□□ 1.6
GTF3C1-211ENST00000569653 FBLN2P98095 1184 aa24.99■■□□□ 1.59
GTF3C1-211ENST00000569653 PBRM1Q86U86 1689 aa24.98■■□□□ 1.59
GTF3C1-211ENST00000569653 GRIN2BQ13224 1484 aa24.96■■□□□ 1.59
GTF3C1-211ENST00000569653 MAGI1Q96QZ7 1491 aaPredicted RBP24.96■■□□□ 1.59
GTF3C1-211ENST00000569653 ABCA5Q8WWZ7 1642 aa24.95■■□□□ 1.58
GTF3C1-211ENST00000569653 CLASP1Q7Z460 1538 aa24.94■■□□□ 1.58
GTF3C1-211ENST00000569653 ABCA10Q8WWZ4 1543 aa24.94■■□□□ 1.58
GTF3C1-211ENST00000569653 ARAP1Q96P48 1450 aa24.92■■□□□ 1.58
GTF3C1-211ENST00000569653 SYNJ1O43426 1573 aa24.91■■□□□ 1.58
GTF3C1-211ENST00000569653 BIVM-ERCC5R4GMW8 1640 aa24.9■■□□□ 1.58
GTF3C1-211ENST00000569653 GAPVD1Q14C86 1478 aa24.9■■□□□ 1.58
GTF3C1-211ENST00000569653 TOP2BQ02880 1626 aa24.87■■□□□ 1.57
GTF3C1-211ENST00000569653 SYNJ2O15056 1496 aa24.87■■□□□ 1.57
GTF3C1-211ENST00000569653 CYB5RLQ6IPT4 315 aa24.83■■□□□ 1.57
GTF3C1-211ENST00000569653 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.56
GTF3C1-211ENST00000569653 CHMP7Q8WUX9 453 aaPredicted RBP24.81■■□□□ 1.56
GTF3C1-211ENST00000569653 ADAMTS12P58397 1594 aa24.74■■□□□ 1.55
GTF3C1-211ENST00000569653 GRIN2AQ12879 1464 aa24.68■■□□□ 1.54
GTF3C1-211ENST00000569653 CEP170Q5SW79 1584 aa24.65■■□□□ 1.54
GTF3C1-211ENST00000569653 ERCC6L2Q5T890 1561 aa24.63■■□□□ 1.53
GTF3C1-211ENST00000569653 ERICH3Q5RHP9 1530 aa24.61■■□□□ 1.53
GTF3C1-211ENST00000569653 NUP160Q12769 1436 aa24.61■■□□□ 1.53
GTF3C1-211ENST00000569653 FHAD1B1AJZ9 1412 aa24.58■■□□□ 1.53
GTF3C1-211ENST00000569653 SHROOM2Q13796 1616 aa24.53■■□□□ 1.52
GTF3C1-211ENST00000569653 TRHP20396 242 aaPredicted RBP24.44■■□□□ 1.5
GTF3C1-211ENST00000569653 RUSC2Q8N2Y8 1516 aa24.4■■□□□ 1.5
GTF3C1-211ENST00000569653 IGF1RP08069 1367 aa24.33■■□□□ 1.49
GTF3C1-211ENST00000569653 PRG4Q92954 1404 aaPredicted RBP24.31■■□□□ 1.48
GTF3C1-211ENST00000569653 KIF27Q86VH2 1401 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms